Wall clock time and date at job start Sun Mar 29 2020 23:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 5 5 C 1.34780 * 119.99910 * 85.00011 * 4 2 1 6 6 O 1.21700 * 119.99856 * 359.97438 * 5 4 2 7 7 C 1.46652 * 120.00085 * 180.02562 * 5 4 2 8 8 C 1.36546 * 125.98830 * 179.71440 * 7 5 4 9 9 C 1.40369 * 106.70670 * 179.85323 * 8 7 5 10 10 C 1.35130 * 107.11230 * 0.40622 * 9 8 7 11 11 O 1.33928 * 108.77095 * 359.75196 * 10 9 8 12 12 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 13 13 O 1.21296 * 120.00265 * 120.00507 * 12 2 1 14 14 N 1.34780 * 120.00249 * 299.99993 * 12 2 1 15 15 C 1.37097 * 120.00420 * 180.02562 * 14 12 2 16 16 H 1.08000 * 119.99621 * 0.02562 * 15 14 12 17 17 C 1.38946 * 120.00026 * 180.02562 * 15 14 12 18 18 N 1.31418 * 119.99512 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00290 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47308 * 89.99890 * 19 17 15 21 21 H 1.48497 * 109.47110 * 210.00231 * 19 17 15 22 22 H 1.48506 * 109.46882 * 330.00040 * 19 17 15 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96994 * 119.99975 * 265.00388 * 4 2 1 27 27 H 1.07999 * 126.64234 * 359.96218 * 8 7 5 28 28 H 1.08000 * 126.43974 * 180.15989 * 9 8 7 29 29 H 1.08005 * 125.61311 * 179.70534 * 10 9 8 30 30 H 0.96998 * 119.99818 * 0.02562 * 14 12 2 31 31 H 0.97006 * 119.99355 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8572 1.1624 -2.4119 7 6 2.6355 -0.7098 -3.5546 8 6 2.8070 -0.1522 -4.7892 9 6 3.2917 -1.1687 -5.6273 10 6 3.3848 -2.2901 -4.8791 11 8 2.9886 -2.0097 -3.6309 12 6 2.0323 -0.7104 1.2305 13 8 2.7297 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.1641 -0.8958 3.5741 16 1 2.7857 -1.7734 3.4750 17 6 1.8280 -0.4213 4.8360 18 7 2.2669 -1.0403 5.9090 19 14 0.7523 1.0962 5.0074 20 1 -0.6750 0.6887 5.0530 21 1 1.1028 1.8125 6.2600 22 1 0.9739 1.9938 3.8452 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 2.2490 -1.6317 -1.1525 27 1 2.6098 0.8727 -5.0667 28 1 3.5393 -1.0734 -6.6742 29 1 3.7225 -3.2541 -5.2302 30 1 1.1488 0.5386 2.5436 31 1 2.0319 -0.7092 6.7900 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343031735.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:03 Heat of formation + Delta-G solvation = -79.316461 kcal Electronic energy + Delta-G solvation = -17917.389326 eV Core-core repulsion = 14778.836318 eV Total energy + Delta-G solvation = -3138.553008 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.64334 -41.21634 -39.94206 -36.45362 -35.88677 -34.06882 -33.90187 -32.27747 -30.38200 -27.29639 -25.60197 -23.72900 -22.68509 -21.40280 -21.28674 -20.63325 -19.60190 -17.77300 -17.50818 -17.29669 -17.09426 -16.54628 -16.11294 -15.68423 -15.39791 -14.97660 -14.57516 -14.30026 -14.12707 -13.93022 -13.71645 -13.53398 -13.30659 -12.99824 -12.66520 -12.45192 -12.00226 -11.58924 -11.53280 -11.03744 -10.70413 -10.35345 -10.30683 -9.66229 -8.46551 -6.08838 0.01415 1.30383 1.32761 1.42860 1.43654 1.62292 1.76376 2.04414 2.10980 2.19878 2.77543 3.09052 3.65602 3.89529 3.97493 4.02971 4.12388 4.13691 4.58658 4.64190 4.75797 4.91541 4.95718 5.12656 5.14686 5.41624 5.47046 5.84723 5.86685 6.34825 6.46977 6.76502 6.88254 7.26833 7.76120 8.69988 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.046087 B = 0.004631 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.398650 B = 6045.134903 C = 6471.576175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.138 3.862 3 H 0.113 0.887 4 N -0.696 5.696 5 C 0.604 3.396 6 O -0.554 6.554 7 C -0.114 4.114 8 C -0.117 4.117 9 C -0.231 4.231 10 C 0.007 3.993 11 O -0.179 6.179 12 C 0.446 3.554 13 O -0.615 6.615 14 N -0.573 5.573 15 C -0.333 4.333 16 H 0.062 0.938 17 C -0.006 4.006 18 N -0.925 5.925 19 Si 0.956 3.044 20 H -0.251 1.251 21 H -0.272 1.272 22 H -0.234 1.234 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.413 0.587 27 H 0.166 0.834 28 H 0.189 0.811 29 H 0.253 0.747 30 H 0.391 0.609 31 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.496 2.924 -20.837 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.029 3.971 3 H 0.131 0.869 4 N -0.347 5.347 5 C 0.392 3.608 6 O -0.435 6.435 7 C -0.165 4.165 8 C -0.138 4.138 9 C -0.249 4.249 10 C -0.062 4.062 11 O -0.074 6.074 12 C 0.233 3.767 13 O -0.501 6.501 14 N -0.212 5.212 15 C -0.462 4.462 16 H 0.080 0.920 17 C -0.206 4.206 18 N -0.564 5.564 19 Si 0.776 3.224 20 H -0.175 1.175 21 H -0.197 1.197 22 H -0.157 1.157 23 H 0.083 0.917 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.250 0.750 27 H 0.183 0.817 28 H 0.206 0.794 29 H 0.269 0.731 30 H 0.227 0.773 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.248 2.880 -20.400 20.856 hybrid contribution -0.072 0.144 0.680 0.699 sum -3.320 3.023 -19.719 20.224 Atomic orbital electron populations 1.22132 0.90969 1.03596 1.04402 1.20704 0.96957 0.97105 0.82301 0.86911 1.45681 1.65690 1.15070 1.08221 1.16768 0.77152 0.85480 0.81411 1.90825 1.52812 1.15094 1.84727 1.21786 1.14040 0.83686 0.97013 1.22278 0.98624 1.02080 0.90780 1.22246 1.07670 0.91922 1.03096 1.25441 0.98257 1.02640 0.79902 1.84112 1.64096 1.25925 1.33285 1.20513 0.84442 0.86781 0.85012 1.90540 1.42966 1.29905 1.86662 1.41907 1.46898 1.27681 1.04754 1.19034 1.31321 1.11595 0.84249 0.92003 1.26067 0.98836 1.02018 0.93725 1.69787 1.45523 1.42170 0.98971 0.85484 0.79162 0.77770 0.79995 1.17530 1.19736 1.15712 0.91687 0.90010 0.89427 0.74970 0.81667 0.79374 0.73105 0.77265 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 9.38 71.98 0.68 -3.58 16 2 C 0.14 4.78 2.98 44.24 0.13 4.91 16 3 H 0.11 3.78 7.58 -2.39 -0.02 3.76 16 4 N -0.70 -23.44 4.95 -450.09 -2.23 -25.67 16 5 C 0.60 19.56 7.75 86.44 0.67 20.23 16 6 O -0.55 -19.80 16.53 -4.35 -0.07 -19.87 16 7 C -0.11 -3.12 7.13 24.07 0.17 -2.94 16 8 C -0.12 -2.57 10.62 22.39 0.24 -2.33 16 9 C -0.23 -3.50 10.88 22.07 0.24 -3.26 16 10 C 0.01 0.10 12.08 67.10 0.81 0.91 16 11 O -0.18 -4.34 10.40 -5.02 -0.05 -4.40 16 12 C 0.45 20.18 7.17 87.66 0.63 20.81 16 13 O -0.61 -33.12 15.41 -3.08 -0.05 -33.17 16 14 N -0.57 -26.75 4.98 -306.98 -1.53 -28.28 16 15 C -0.33 -19.11 10.16 84.04 0.85 -18.25 16 16 H 0.06 4.20 7.39 -2.91 -0.02 4.18 16 17 C -0.01 -0.34 5.50 84.92 0.47 0.12 16 18 N -0.92 -54.47 13.96 21.66 0.30 -54.17 16 19 Si 0.96 37.89 27.74 68.60 1.90 39.79 16 20 H -0.25 -9.31 7.11 99.48 0.71 -8.61 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.09 2.15 7.56 -2.38 -0.02 2.13 16 26 H 0.41 14.30 7.55 -92.71 -0.70 13.60 16 27 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 28 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 29 H 0.25 1.23 8.06 -2.91 -0.02 1.21 16 30 H 0.39 15.31 5.18 -92.71 -0.48 14.83 16 31 H 0.28 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -75.47 282.37 3.11 -72.36 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: -0.05 Total: 36.79 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 4.89 Total: 16.62 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -3.45 Total: -108.12 kcal Atomic # 8 Polarization: -57.26 SS G_CDS: -0.17 Total: -57.44 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 1.90 Total: 39.79 kcal Total: -75.47 3.11 -72.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343031735.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.959 kcal (2) G-P(sol) polarization free energy of solvation -75.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds