Wall clock time and date at job start Sun Mar 29 2020 23:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86801 * 119.99490 * 2 1 4 4 H 1.48499 * 109.46862 * 269.99076 * 3 2 1 5 5 H 1.48497 * 109.47554 * 29.99745 * 3 2 1 6 6 H 1.48498 * 109.46936 * 149.99661 * 3 2 1 7 7 C 1.38947 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99908 * 180.02562 * 7 2 1 9 9 N 1.37102 * 120.00157 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00326 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99538 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00299 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.47435 * 180.02562 * 12 10 9 14 14 N 1.46493 * 109.47245 * 180.02562 * 13 12 10 15 15 C 1.34778 * 119.99793 * 179.97438 * 14 13 12 16 16 O 1.21695 * 120.00192 * 359.97438 * 15 14 13 17 17 C 1.46661 * 119.99796 * 179.97438 * 15 14 13 18 18 C 1.36547 * 125.98711 * 179.97438 * 17 15 14 19 19 C 1.40360 * 106.70833 * 180.02562 * 18 17 15 20 20 C 1.35131 * 107.11647 * 359.97438 * 19 18 17 21 21 O 1.33934 * 108.76477 * 0.02562 * 20 19 18 22 22 H 0.96993 * 119.99939 * 0.02562 * 1 2 3 23 23 H 0.97006 * 119.99344 * 0.02562 * 9 7 2 24 24 H 1.08997 * 109.47542 * 59.99831 * 12 10 9 25 25 H 1.09001 * 109.46974 * 300.00200 * 12 10 9 26 26 H 1.08997 * 109.47315 * 59.99176 * 13 12 10 27 27 H 1.09001 * 109.46782 * 299.99802 * 13 12 10 28 28 H 0.96998 * 120.00266 * 359.97438 * 14 13 12 29 29 H 1.08005 * 126.64485 * 0.02562 * 18 17 15 30 30 H 1.08003 * 126.44294 * 180.02562 * 19 18 17 31 31 H 1.07997 * 125.61851 * 180.26772 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6528 0.7000 6 1 3.5456 1.4404 0.7001 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0010 12 6 1.2440 -4.8629 0.0000 13 6 2.2383 -6.0258 0.0007 14 7 1.5058 -7.2945 -0.0005 15 6 2.1798 -8.4617 -0.0006 16 8 3.3968 -8.4616 -0.0002 17 6 1.4465 -9.7318 -0.0012 18 6 2.0022 -10.9791 -0.0019 19 6 0.9385 -11.8948 -0.0029 20 6 -0.2055 -11.1755 -0.0022 21 8 0.1048 -9.8726 -0.0014 22 1 -0.4850 0.8400 -0.0004 23 1 0.3535 -2.3906 -0.0002 24 1 0.6177 -4.9206 -0.8902 25 1 0.6170 -4.9209 0.8897 26 1 2.8643 -5.9680 0.8911 27 1 2.8656 -5.9680 -0.8888 28 1 0.5359 -7.2946 -0.0012 29 1 3.0562 -11.2153 -0.0016 30 1 1.0191 -12.9718 -0.0032 31 1 -1.2052 -11.5839 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343031791.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:13 Heat of formation + Delta-G solvation = -64.737415 kcal Electronic energy + Delta-G solvation = -17200.320115 eV Core-core repulsion = 14062.399302 eV Total energy + Delta-G solvation = -3137.920813 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.89191 -39.47628 -38.23927 -35.17857 -33.97535 -33.29401 -31.41785 -30.94761 -29.55318 -25.54618 -23.94259 -22.31880 -21.88022 -20.52115 -19.38269 -18.53681 -17.80937 -16.57292 -16.51690 -16.28626 -15.42193 -15.21521 -14.47926 -14.20229 -14.18611 -13.85439 -13.25597 -13.23897 -12.92608 -12.67508 -12.43997 -11.63055 -11.40590 -11.22347 -10.97799 -10.41725 -10.36565 -10.31891 -10.24466 -9.56420 -9.17804 -8.83967 -8.49481 -8.02394 -6.46297 -3.87359 0.87784 2.11633 2.47611 3.11099 3.14660 3.15763 3.25159 3.31663 3.83470 4.15453 4.46997 4.64757 4.78754 4.94788 5.18515 5.24874 5.38972 5.51359 5.54278 5.64619 5.78310 6.05798 6.20445 6.26123 6.28046 6.46149 6.61618 7.42806 7.51693 8.00258 8.04847 8.54216 9.12415 9.47868 9.98392 10.71199 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.063709 B = 0.003309 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.396154 B = 8458.525734 C = 8877.476460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.104 0.896 9 N -0.559 5.559 10 C 0.442 3.558 11 O -0.593 6.593 12 C -0.143 4.143 13 C 0.137 3.863 14 N -0.717 5.717 15 C 0.598 3.402 16 O -0.517 6.517 17 C -0.073 4.073 18 C -0.125 4.125 19 C -0.226 4.226 20 C -0.011 4.011 21 O -0.164 6.164 22 H 0.272 0.728 23 H 0.393 0.607 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.403 0.597 29 H 0.160 0.840 30 H 0.156 0.844 31 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.500 -19.594 0.006 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.122 0.878 9 N -0.194 5.194 10 C 0.227 3.773 11 O -0.479 6.479 12 C -0.184 4.184 13 C 0.015 3.985 14 N -0.368 5.368 15 C 0.383 3.617 16 O -0.395 6.395 17 C -0.125 4.125 18 C -0.146 4.146 19 C -0.245 4.245 20 C -0.080 4.080 21 O -0.059 6.059 22 H 0.082 0.918 23 H 0.227 0.773 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.238 0.762 29 H 0.178 0.822 30 H 0.174 0.826 31 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -4.134 -19.106 0.014 19.548 hybrid contribution -0.811 0.574 -0.013 0.994 sum -4.945 -18.532 0.001 19.180 Atomic orbital electron populations 1.69610 1.05972 1.28293 1.50268 1.25285 0.95649 0.99819 0.97103 0.85840 0.79271 0.80648 0.78453 1.20337 1.20882 1.19333 1.19743 0.93473 0.82208 1.47733 0.87790 1.41875 1.09265 1.04614 1.63655 1.19580 0.88150 0.84652 0.84873 1.90559 1.13819 1.87275 1.56234 1.21643 0.99007 0.94216 1.03560 1.21155 0.93861 0.79243 1.04270 1.46016 1.10739 1.06018 1.73996 1.16536 0.86356 0.81305 0.77477 1.90913 1.11900 1.86200 1.50484 1.22239 0.80468 0.96411 1.13397 1.21997 1.01310 0.90487 1.00781 1.21868 0.91877 1.01243 1.09494 1.24408 1.00749 0.79917 1.02965 1.84070 1.23509 1.27926 1.70407 0.91783 0.77317 0.89715 0.89721 0.90178 0.90187 0.76210 0.82200 0.82642 0.77371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -13.93 5.29 -10.97 -0.06 -13.98 16 10 C 0.44 10.22 7.78 -10.99 -0.09 10.13 16 11 O -0.59 -16.02 15.56 5.54 0.09 -15.93 16 12 C -0.14 -2.35 5.81 -27.89 -0.16 -2.51 16 13 C 0.14 2.27 4.96 -4.05 -0.02 2.25 16 14 N -0.72 -9.67 5.55 -61.63 -0.34 -10.01 16 15 C 0.60 8.90 7.79 -12.86 -0.10 8.80 16 16 O -0.52 -9.53 16.86 5.19 0.09 -9.44 16 17 C -0.07 -0.90 7.13 -36.79 -0.26 -1.16 16 18 C -0.13 -1.35 10.62 -39.39 -0.42 -1.77 16 19 C -0.23 -1.81 10.87 -39.89 -0.43 -2.24 16 20 C -0.01 -0.08 12.08 29.63 0.36 0.28 16 21 O -0.16 -1.68 10.40 5.00 0.05 -1.62 16 22 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 23 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 27 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 28 H 0.40 4.30 8.23 -40.82 -0.34 3.96 16 29 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 30 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 31 H 0.21 0.61 8.06 -52.49 -0.42 0.18 16 LS Contribution 288.06 15.07 4.34 4.34 Total: -1.00 -33.47 288.06 -4.62 -38.09 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -3.12 Total: 10.37 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -1.37 Total: 5.80 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.32 Total: -47.48 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: 0.23 Total: -27.00 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.47 -4.62 -38.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343031791.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.648 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds