Wall clock time and date at job start Sun Mar 29 2020 23:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 5 5 C 1.34770 * 120.00092 * 274.99977 * 4 2 1 6 6 O 1.21616 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.47375 * 120.00224 * 179.97438 * 5 4 2 8 8 C 1.47023 * 127.19613 * 180.02562 * 7 5 4 9 9 C 1.34173 * 105.95348 * 179.97438 * 8 7 5 10 10 O 1.34216 * 109.12740 * 359.97438 * 9 8 7 11 11 C 1.33651 * 110.90907 * 359.76509 * 10 9 8 12 12 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 13 13 O 1.21293 * 120.00006 * 240.00291 * 12 2 1 14 14 N 1.34777 * 119.99538 * 59.99635 * 12 2 1 15 15 C 1.37104 * 119.99773 * 179.72591 * 14 12 2 16 16 H 1.08002 * 119.99671 * 0.27660 * 15 14 12 17 17 C 1.38950 * 120.00030 * 180.27703 * 15 14 12 18 18 N 1.31414 * 119.99926 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47425 * 90.00231 * 19 17 15 21 21 H 1.48499 * 109.47218 * 210.00087 * 19 17 15 22 22 H 1.48505 * 109.47256 * 330.00093 * 19 17 15 23 23 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 24 24 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 25 25 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99554 * 95.00338 * 4 2 1 27 27 H 1.07994 * 127.02065 * 359.97438 * 8 7 5 28 28 H 1.07999 * 125.43673 * 180.02562 * 9 8 7 29 29 H 1.07996 * 125.80708 * 180.26656 * 11 10 9 30 30 H 0.97001 * 120.00485 * 0.02562 * 14 12 2 31 31 H 0.96999 * 119.99863 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8574 1.1618 2.4118 7 6 2.6378 -0.7129 3.5607 8 6 2.8372 -0.1385 4.8993 9 6 3.2932 -1.1405 5.6664 10 8 3.3863 -2.2550 4.9244 11 6 2.9956 -2.0251 3.6671 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1190 14 7 1.7067 -0.2501 -2.4545 15 6 2.1684 -0.8931 -3.5739 16 1 2.7894 -1.7712 -3.4747 17 6 1.8374 -0.4151 -4.8359 18 7 1.0823 0.6536 -4.9565 19 14 2.4659 -1.2917 -6.3610 20 1 1.4894 -2.3323 -6.7717 21 1 2.6350 -0.3096 -7.4620 22 1 3.7730 -1.9299 -6.0619 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 2.2490 -1.6317 1.1527 27 1 2.6542 0.8815 5.2031 28 1 3.5442 -1.0629 6.7139 29 1 2.9700 -2.7534 2.8701 30 1 1.1493 0.5388 -2.5436 31 1 0.8509 0.9871 -5.8375 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343032229.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:05 Heat of formation + Delta-G solvation = -62.420397 kcal Electronic energy + Delta-G solvation = -17802.892766 eV Core-core repulsion = 14665.072426 eV Total energy + Delta-G solvation = -3137.820339 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.60417 -39.56030 -38.07146 -34.66725 -33.91385 -32.97767 -31.60030 -30.57642 -29.21187 -25.35645 -24.35416 -22.60595 -21.53700 -19.94448 -19.47520 -18.50742 -17.97691 -16.43162 -16.22660 -15.71694 -15.37491 -14.89588 -14.61442 -14.38574 -13.92703 -13.72371 -13.25780 -13.00344 -12.75490 -12.44509 -12.08323 -11.79830 -11.64150 -11.19419 -11.05635 -10.45671 -10.32121 -9.88499 -9.85348 -9.63345 -9.01393 -8.86006 -8.46183 -8.09813 -6.51683 -3.93578 1.32253 1.99832 2.82240 3.11328 3.21495 3.25558 3.34116 3.49662 3.74940 4.10785 4.53111 4.64678 4.80935 5.04857 5.15816 5.42146 5.56486 5.58740 5.66224 5.82981 5.88022 6.10523 6.17398 6.23835 6.50925 6.70908 6.84019 7.45785 7.78776 7.92184 8.41541 8.46973 9.04587 9.39570 9.87557 10.65214 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.046284 B = 0.004283 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.815902 B = 6535.555676 C = 6955.366050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.133 3.867 3 H 0.101 0.899 4 N -0.698 5.698 5 C 0.585 3.415 6 O -0.544 6.544 7 C -0.230 4.230 8 C -0.165 4.165 9 C -0.047 4.047 10 O -0.176 6.176 11 C 0.023 3.977 12 C 0.432 3.568 13 O -0.597 6.597 14 N -0.547 5.547 15 C -0.305 4.305 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.895 5.895 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.269 1.269 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.406 0.594 27 H 0.159 0.841 28 H 0.207 0.793 29 H 0.214 0.786 30 H 0.395 0.605 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.570 -2.798 15.419 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.119 0.881 4 N -0.351 5.351 5 C 0.372 3.628 6 O -0.423 6.423 7 C -0.235 4.235 8 C -0.184 4.184 9 C -0.113 4.113 10 O -0.071 6.071 11 C -0.048 4.048 12 C 0.217 3.783 13 O -0.483 6.483 14 N -0.182 5.182 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.759 3.241 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.193 1.193 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.242 0.758 27 H 0.176 0.824 28 H 0.224 0.776 29 H 0.231 0.769 30 H 0.229 0.771 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.852 -2.768 15.419 15.689 hybrid contribution -0.015 -0.094 -0.993 0.998 sum 0.837 -2.862 14.426 14.731 Atomic orbital electron populations 1.22105 0.93835 1.02610 1.02861 1.20686 0.94868 0.97628 0.84373 0.88101 1.45575 1.66416 1.14610 1.08452 1.17233 0.77457 0.86133 0.81955 1.90763 1.51042 1.15418 1.85090 1.21580 1.11573 0.94487 0.95860 1.22784 1.03665 1.00854 0.91111 1.23911 1.06060 0.83577 0.97704 1.83790 1.66483 1.36783 1.20071 1.24592 0.97932 0.96979 0.85260 1.19736 0.86372 0.87729 0.84414 1.90491 1.42921 1.28776 1.86157 1.41810 1.44839 1.27458 1.04093 1.19737 1.29647 1.11119 0.82965 0.87700 1.25316 0.96616 0.96322 0.99418 1.69613 1.36064 1.22435 1.25382 0.85818 0.79348 0.78720 0.80180 1.20276 1.20800 1.19324 0.91907 0.90753 0.92149 0.75770 0.82362 0.77611 0.76943 0.77054 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.38 37.16 0.35 -2.21 16 2 C 0.13 2.49 2.98 -69.08 -0.21 2.28 16 3 H 0.10 1.94 7.58 -51.93 -0.39 1.55 16 4 N -0.70 -11.77 4.94 -56.02 -0.28 -12.05 16 5 C 0.59 9.88 7.78 -12.54 -0.10 9.78 16 6 O -0.54 -10.80 16.65 5.26 0.09 -10.72 16 7 C -0.23 -3.17 6.31 -103.27 -0.65 -3.82 16 8 C -0.16 -1.93 11.01 -37.45 -0.41 -2.34 16 9 C -0.05 -0.43 12.03 29.30 0.35 -0.07 16 10 O -0.18 -1.86 10.52 7.66 0.08 -1.78 16 11 C 0.02 0.25 11.61 30.08 0.35 0.60 16 12 C 0.43 9.93 7.17 -10.99 -0.08 9.85 16 13 O -0.60 -15.22 15.41 5.55 0.09 -15.13 16 14 N -0.55 -13.52 5.18 -10.96 -0.06 -13.58 16 15 C -0.31 -8.26 9.68 -14.93 -0.14 -8.41 16 16 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 17 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 18 N -0.89 -23.76 13.05 55.50 0.72 -23.04 16 19 Si 0.93 20.46 29.55 -169.99 -5.02 15.43 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.07 1.20 7.56 -51.93 -0.39 0.81 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.41 6.35 6.76 -40.82 -0.28 6.07 16 27 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.21 1.00 8.06 -52.49 -0.42 0.57 16 29 H 0.21 1.77 7.47 -52.49 -0.39 1.38 16 30 H 0.40 9.41 7.32 -40.82 -0.30 9.11 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 284.65 15.07 4.29 4.29 Total: -1.00 -32.39 284.65 -3.68 -36.07 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -2.95 Total: 14.25 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -0.64 Total: 6.25 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.39 Total: -48.66 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: 0.25 Total: -27.62 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.39 -3.68 -36.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343032229.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.351 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds