Wall clock time and date at job start Sun Mar 29 2020 23:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 5 5 C 1.34770 * 120.00092 * 274.99977 * 4 2 1 6 6 O 1.21616 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.47375 * 120.00224 * 179.97438 * 5 4 2 8 8 C 1.47023 * 127.19613 * 180.02562 * 7 5 4 9 9 C 1.34173 * 105.95348 * 179.97438 * 8 7 5 10 10 O 1.34216 * 109.12740 * 359.97438 * 9 8 7 11 11 C 1.33651 * 110.90907 * 359.76509 * 10 9 8 12 12 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 13 13 O 1.21293 * 120.00006 * 240.00291 * 12 2 1 14 14 N 1.34777 * 119.99538 * 59.99635 * 12 2 1 15 15 C 1.37104 * 119.99773 * 179.72591 * 14 12 2 16 16 H 1.08002 * 119.99671 * 0.27660 * 15 14 12 17 17 C 1.38950 * 120.00030 * 180.27703 * 15 14 12 18 18 N 1.31414 * 119.99926 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47425 * 90.00231 * 19 17 15 21 21 H 1.48499 * 109.47218 * 210.00087 * 19 17 15 22 22 H 1.48505 * 109.47256 * 330.00093 * 19 17 15 23 23 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 24 24 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 25 25 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99554 * 95.00338 * 4 2 1 27 27 H 1.07994 * 127.02065 * 359.97438 * 8 7 5 28 28 H 1.07999 * 125.43673 * 180.02562 * 9 8 7 29 29 H 1.07996 * 125.80708 * 180.26656 * 11 10 9 30 30 H 0.97001 * 120.00485 * 0.02562 * 14 12 2 31 31 H 0.96999 * 119.99863 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8574 1.1618 2.4118 7 6 2.6378 -0.7129 3.5607 8 6 2.8372 -0.1385 4.8993 9 6 3.2932 -1.1405 5.6664 10 8 3.3863 -2.2550 4.9244 11 6 2.9956 -2.0251 3.6671 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1190 14 7 1.7067 -0.2501 -2.4545 15 6 2.1684 -0.8931 -3.5739 16 1 2.7894 -1.7712 -3.4747 17 6 1.8374 -0.4151 -4.8359 18 7 1.0823 0.6536 -4.9565 19 14 2.4659 -1.2917 -6.3610 20 1 1.4894 -2.3323 -6.7717 21 1 2.6350 -0.3096 -7.4620 22 1 3.7730 -1.9299 -6.0619 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 2.2490 -1.6317 1.1527 27 1 2.6542 0.8815 5.2031 28 1 3.5442 -1.0629 6.7139 29 1 2.9700 -2.7534 2.8701 30 1 1.1493 0.5388 -2.5436 31 1 0.8509 0.9871 -5.8375 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343032229.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:05 Heat of formation + Delta-G solvation = -86.720218 kcal Electronic energy + Delta-G solvation = -17803.946485 eV Core-core repulsion = 14665.072426 eV Total energy + Delta-G solvation = -3138.874059 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.46594 -41.08979 -39.77115 -36.34102 -35.73407 -34.00308 -33.41823 -31.87637 -30.29158 -27.24430 -25.72473 -24.00041 -22.37690 -21.18940 -21.09689 -20.16101 -19.42950 -17.77946 -17.28791 -17.06392 -16.99919 -16.29407 -16.10205 -15.85932 -15.45564 -15.39728 -14.56374 -14.42736 -13.82856 -13.64080 -13.55452 -13.35967 -13.22177 -12.92937 -12.60251 -12.43723 -12.12663 -11.56155 -11.23617 -10.86017 -10.56694 -10.18453 -10.08503 -9.73330 -8.50650 -6.00810 0.33829 1.14842 1.36657 1.43239 1.55643 1.89211 1.91183 2.10986 2.29551 2.31639 3.06483 3.16471 3.62499 3.78905 4.00406 4.12813 4.17366 4.23331 4.54806 4.67238 4.76662 4.80962 5.00913 5.13061 5.27884 5.35922 5.38756 5.91972 5.99416 6.45346 6.50568 7.03581 7.10841 7.44452 7.94555 8.66186 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.046284 B = 0.004283 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.815902 B = 6535.555676 C = 6955.366050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.142 3.858 3 H 0.095 0.905 4 N -0.696 5.696 5 C 0.586 3.414 6 O -0.581 6.581 7 C -0.268 4.268 8 C -0.194 4.194 9 C -0.021 4.021 10 O -0.175 6.175 11 C 0.042 3.958 12 C 0.435 3.565 13 O -0.623 6.623 14 N -0.556 5.556 15 C -0.338 4.338 16 H 0.087 0.913 17 C -0.009 4.009 18 N -0.916 5.916 19 Si 0.996 3.004 20 H -0.269 1.269 21 H -0.273 1.273 22 H -0.271 1.271 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.412 0.588 27 H 0.159 0.841 28 H 0.253 0.747 29 H 0.237 0.763 30 H 0.398 0.602 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 -3.756 16.305 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.033 3.967 3 H 0.113 0.887 4 N -0.348 5.348 5 C 0.376 3.624 6 O -0.463 6.463 7 C -0.272 4.272 8 C -0.214 4.214 9 C -0.086 4.086 10 O -0.069 6.069 11 C -0.029 4.029 12 C 0.222 3.778 13 O -0.511 6.511 14 N -0.191 5.191 15 C -0.467 4.467 16 H 0.104 0.896 17 C -0.210 4.210 18 N -0.556 5.556 19 Si 0.820 3.180 20 H -0.194 1.194 21 H -0.197 1.197 22 H -0.195 1.195 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.250 0.750 27 H 0.176 0.824 28 H 0.269 0.731 29 H 0.253 0.747 30 H 0.232 0.768 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.077 -3.732 16.326 16.782 hybrid contribution -0.058 0.188 -1.168 1.184 sum 1.019 -3.544 15.158 15.600 Atomic orbital electron populations 1.22029 0.91822 1.03168 1.03420 1.20505 0.96308 0.96693 0.83157 0.88694 1.45538 1.66541 1.14800 1.07963 1.17663 0.76504 0.85763 0.82497 1.90731 1.52826 1.17034 1.85692 1.21497 1.14295 0.95938 0.95514 1.22953 1.05739 1.01876 0.90831 1.24688 1.03082 0.81967 0.98849 1.83843 1.65965 1.37285 1.19829 1.24953 0.95756 0.96268 0.85909 1.20408 0.85143 0.87148 0.85098 1.90463 1.43825 1.30000 1.86773 1.41846 1.45306 1.27641 1.04311 1.19753 1.30948 1.11584 0.84431 0.89555 1.26113 0.96357 0.96831 1.01698 1.69679 1.36362 1.23132 1.26384 0.84875 0.78667 0.77876 0.76618 1.19399 1.19748 1.19527 0.90885 0.90596 0.91570 0.75030 0.82363 0.73147 0.74696 0.76769 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 9.38 71.98 0.68 -4.05 16 2 C 0.14 5.35 2.98 44.24 0.13 5.48 16 3 H 0.10 3.72 7.58 -2.39 -0.02 3.71 16 4 N -0.70 -23.36 4.94 -449.41 -2.22 -25.58 16 5 C 0.59 19.81 7.78 86.65 0.67 20.48 16 6 O -0.58 -23.43 16.65 -4.08 -0.07 -23.49 16 7 C -0.27 -7.14 6.31 -18.99 -0.12 -7.26 16 8 C -0.19 -4.30 11.01 23.65 0.26 -4.04 16 9 C -0.02 -0.31 12.03 66.89 0.80 0.49 16 10 O -0.17 -3.16 10.52 4.48 0.05 -3.11 16 11 C 0.04 0.84 11.61 67.40 0.78 1.63 16 12 C 0.44 20.25 7.17 87.66 0.63 20.88 16 13 O -0.62 -32.09 15.41 -3.07 -0.05 -32.14 16 14 N -0.56 -27.92 5.18 -306.98 -1.59 -29.51 16 15 C -0.34 -18.56 9.68 84.04 0.81 -17.75 16 16 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 17 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 18 N -0.92 -48.42 13.05 21.66 0.28 -48.13 16 19 Si 1.00 41.54 29.55 68.60 2.03 43.57 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.08 2.43 7.56 -2.39 -0.02 2.41 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 26 H 0.41 12.69 6.76 -92.71 -0.63 12.06 16 27 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 28 H 0.25 1.25 8.06 -2.91 -0.02 1.23 16 29 H 0.24 3.39 7.47 -2.91 -0.02 3.37 16 30 H 0.40 19.27 7.32 -92.71 -0.68 18.60 16 31 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -69.81 284.65 3.43 -66.39 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.12 Total: 36.16 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 5.12 Total: 15.85 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -3.53 Total: -103.22 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -0.07 Total: -58.75 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -69.81 3.43 -66.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343032229.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.335 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds