Wall clock time and date at job start Sun Mar 29 2020 23:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47463 * 2 1 4 4 N 1.46502 * 109.47399 * 240.00110 * 2 1 3 5 5 C 1.34769 * 120.00003 * 85.00006 * 4 2 1 6 6 O 1.21614 * 120.00201 * 0.02562 * 5 4 2 7 7 C 1.47378 * 120.00151 * 180.02562 * 5 4 2 8 8 C 1.47020 * 127.19340 * 179.97438 * 7 5 4 9 9 C 1.34184 * 105.95357 * 179.97438 * 8 7 5 10 10 O 1.34209 * 109.12515 * 0.02562 * 9 8 7 11 11 C 1.33658 * 110.90640 * 359.97438 * 10 9 8 12 12 C 1.50704 * 109.46991 * 120.00279 * 2 1 3 13 13 O 1.21288 * 120.00184 * 120.00209 * 12 2 1 14 14 N 1.34778 * 119.99701 * 299.99988 * 12 2 1 15 15 C 1.37093 * 119.99764 * 179.97438 * 14 12 2 16 16 H 1.08004 * 120.00530 * 0.02562 * 15 14 12 17 17 C 1.38949 * 119.99987 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00329 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00014 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47360 * 89.99956 * 19 17 15 21 21 H 1.48501 * 109.47199 * 209.99812 * 19 17 15 22 22 H 1.48500 * 109.47216 * 330.00008 * 19 17 15 23 23 H 1.09004 * 109.47167 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47193 * 299.99891 * 1 2 3 25 25 H 1.09009 * 109.46751 * 60.00065 * 1 2 3 26 26 H 0.97000 * 119.99846 * 265.00668 * 4 2 1 27 27 H 1.07999 * 127.02375 * 0.22997 * 8 7 5 28 28 H 1.07998 * 125.43737 * 180.02562 * 9 8 7 29 29 H 1.08002 * 125.79551 * 180.02562 * 11 10 9 30 30 H 0.96998 * 119.99892 * 359.97438 * 14 12 2 31 31 H 0.97000 * 120.00427 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1618 -2.4116 7 6 2.6379 -0.7131 -3.5606 8 6 2.8374 -0.1387 -4.8991 9 6 3.2945 -1.1405 -5.6660 10 8 3.3883 -2.2548 -4.9238 11 6 3.0022 -2.0235 -3.6652 12 6 2.0323 -0.7105 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7066 -0.2500 2.4546 15 6 2.1631 -0.8966 3.5739 16 1 2.7840 -1.7748 3.4749 17 6 1.8279 -0.4217 4.8359 18 7 2.2658 -1.0411 5.9089 19 14 0.7545 1.0975 5.0074 20 1 -0.6734 0.6923 5.0531 21 1 1.1062 1.8133 6.2600 22 1 0.9774 1.9948 3.8453 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 2.2490 -1.6318 -1.1526 27 1 2.6572 0.8821 -5.2023 28 1 3.5466 -1.0626 -6.7132 29 1 2.9823 -2.7505 -2.8668 30 1 1.1493 0.5388 2.5435 31 1 2.0315 -0.7098 6.7900 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343032230.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:07 Heat of formation + Delta-G solvation = -55.159113 kcal Electronic energy + Delta-G solvation = -17860.422362 eV Core-core repulsion = 14722.916895 eV Total energy + Delta-G solvation = -3137.505466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.64490 -39.69040 -38.24487 -34.76645 -34.01422 -33.03051 -31.92158 -30.78847 -29.32899 -25.44813 -24.37888 -22.55190 -21.57700 -19.99457 -19.55015 -18.95886 -18.11904 -16.47484 -16.26644 -15.83804 -15.42275 -15.03699 -14.72407 -14.59800 -13.98813 -13.59300 -13.19572 -13.03641 -12.87307 -12.51857 -12.26858 -12.24273 -11.98618 -11.33832 -11.20497 -10.64785 -10.07564 -9.93879 -9.92965 -9.70302 -9.10650 -8.92494 -8.60320 -8.31059 -6.41759 -3.94167 1.27525 1.95506 2.78535 2.98456 3.02587 3.10924 3.22333 3.41378 3.57073 4.02432 4.48010 4.49151 4.59502 4.99138 5.11164 5.32630 5.44755 5.49039 5.51975 5.61424 5.78705 5.87224 6.04657 6.14190 6.34152 6.57060 6.80150 7.43313 7.69815 7.99663 8.32998 8.45437 8.80861 9.29058 9.62945 10.70454 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.046108 B = 0.004558 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.118333 B = 6141.048468 C = 6565.905776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.130 3.870 3 H 0.103 0.897 4 N -0.699 5.699 5 C 0.587 3.413 6 O -0.544 6.544 7 C -0.232 4.232 8 C -0.165 4.165 9 C -0.046 4.046 10 O -0.176 6.176 11 C 0.024 3.976 12 C 0.442 3.558 13 O -0.578 6.578 14 N -0.575 5.575 15 C -0.310 4.310 16 H 0.122 0.878 17 C 0.046 3.954 18 N -0.874 5.874 19 Si 0.877 3.123 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.267 1.267 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.407 0.593 27 H 0.159 0.841 28 H 0.208 0.792 29 H 0.215 0.785 30 H 0.374 0.626 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.292 1.243 -18.194 18.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 H 0.120 0.880 4 N -0.351 5.351 5 C 0.374 3.626 6 O -0.423 6.423 7 C -0.236 4.236 8 C -0.184 4.184 9 C -0.112 4.112 10 O -0.071 6.071 11 C -0.046 4.046 12 C 0.228 3.772 13 O -0.462 6.462 14 N -0.212 5.212 15 C -0.439 4.439 16 H 0.139 0.861 17 C -0.158 4.158 18 N -0.513 5.513 19 Si 0.703 3.297 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.192 1.192 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.244 0.756 27 H 0.176 0.824 28 H 0.224 0.776 29 H 0.231 0.769 30 H 0.207 0.793 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.918 1.137 -18.129 18.266 hybrid contribution -0.739 0.974 0.509 1.324 sum -2.657 2.111 -17.621 17.945 Atomic orbital electron populations 1.22129 0.93836 1.02917 1.02754 1.20701 0.94889 0.97735 0.84496 0.87952 1.45554 1.66554 1.14684 1.08350 1.17230 0.77336 0.86098 0.81923 1.90760 1.51057 1.15405 1.85097 1.21543 1.11728 0.94569 0.95810 1.22780 1.03687 1.00843 0.91112 1.23922 1.05960 0.83548 0.97748 1.83796 1.66561 1.36744 1.19951 1.24605 0.97760 0.96975 0.85251 1.19626 0.86045 0.87582 0.83973 1.90534 1.41704 1.28117 1.85867 1.42136 1.46326 1.27111 1.05639 1.19446 1.30499 1.11959 0.81948 0.86075 1.25053 0.97637 0.98083 0.95056 1.69614 1.43865 1.39783 0.98053 0.86706 0.81299 0.82846 0.78896 1.19329 1.19920 1.19217 0.91747 0.91242 0.91580 0.75608 0.82366 0.77587 0.76900 0.79299 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.38 37.15 0.35 -2.02 16 2 C 0.13 2.29 2.98 -69.08 -0.21 2.09 16 3 H 0.10 1.82 7.58 -51.93 -0.39 1.43 16 4 N -0.70 -11.19 4.94 -56.03 -0.28 -11.46 16 5 C 0.59 9.45 7.78 -12.54 -0.10 9.36 16 6 O -0.54 -10.33 16.65 5.27 0.09 -10.24 16 7 C -0.23 -3.06 6.31 -103.28 -0.65 -3.71 16 8 C -0.16 -1.85 11.01 -37.45 -0.41 -2.27 16 9 C -0.05 -0.40 12.03 29.30 0.35 -0.05 16 10 O -0.18 -1.79 10.52 7.66 0.08 -1.71 16 11 C 0.02 0.26 11.61 30.07 0.35 0.61 16 12 C 0.44 9.72 7.17 -10.98 -0.08 9.65 16 13 O -0.58 -14.50 15.41 5.55 0.09 -14.41 16 14 N -0.57 -13.33 4.98 -10.96 -0.05 -13.38 16 15 C -0.31 -8.51 10.16 -14.94 -0.15 -8.66 16 16 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 17 C 0.05 1.23 5.50 -17.47 -0.10 1.13 16 18 N -0.87 -24.86 13.96 55.50 0.77 -24.09 16 19 Si 0.88 18.91 27.74 -169.99 -4.71 14.19 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.07 0.97 7.56 -51.93 -0.39 0.58 16 25 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 26 H 0.41 6.06 6.76 -40.82 -0.28 5.78 16 27 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.21 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.21 1.69 7.47 -52.49 -0.39 1.30 16 30 H 0.37 7.70 5.18 -40.82 -0.21 7.49 16 31 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 281.53 15.07 4.24 4.24 Total: -1.00 -33.48 281.53 -3.33 -36.81 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -2.91 Total: 13.93 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -0.64 Total: 6.12 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.44 Total: -48.94 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: 0.25 Total: -26.36 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.19 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.48 -3.33 -36.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343032230.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.348 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds