Wall clock time and date at job start Sun Mar 29 2020 23:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99666 * 2 1 4 4 H 1.48501 * 109.46979 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47124 * 300.00208 * 3 2 1 6 6 H 1.48494 * 109.47299 * 60.00253 * 3 2 1 7 7 C 1.37874 * 120.00427 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00372 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99551 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46681 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.46773 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99721 * 180.02562 * 11 10 9 13 13 O 1.21609 * 119.99844 * 359.97438 * 12 11 10 14 14 C 1.47288 * 119.99613 * 180.02562 * 12 11 10 15 15 C 1.36568 * 125.80309 * 180.02562 * 14 12 11 16 16 C 1.40067 * 106.92810 * 179.97438 * 15 14 12 17 17 C 1.36569 * 106.92481 * 359.97438 * 16 15 14 18 18 C 1.47286 * 125.80563 * 179.97438 * 17 16 15 19 19 N 1.34777 * 119.99694 * 179.97438 * 18 17 16 20 20 O 1.21613 * 120.00055 * 0.02562 * 18 17 16 21 21 O 1.34550 * 125.81026 * 0.27557 * 14 12 11 22 22 H 0.96998 * 120.00229 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47544 * 60.00041 * 9 7 2 24 24 H 1.08997 * 109.47059 * 299.99528 * 9 7 2 25 25 H 1.08998 * 109.46954 * 59.99856 * 10 9 7 26 26 H 1.08997 * 109.47133 * 299.99659 * 10 9 7 27 27 H 0.96996 * 120.00161 * 359.97438 * 11 10 9 28 28 H 1.08009 * 126.53833 * 359.96949 * 15 14 12 29 29 H 1.08003 * 126.53613 * 180.02562 * 16 15 14 30 30 H 0.97001 * 120.00485 * 0.02562 * 19 18 17 31 31 H 0.97005 * 119.99790 * 179.72388 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0027 11 7 1.5130 -4.9307 -0.0033 12 6 2.1869 -6.0979 -0.0037 13 8 3.4030 -6.0978 -0.0041 14 6 1.4505 -7.3735 -0.0048 15 6 2.0102 -8.6192 -0.0048 16 6 0.9551 -9.5404 -0.0054 17 6 -0.2037 -8.8177 -0.0051 18 6 -1.5669 -9.3752 -0.0061 19 7 -2.6324 -8.5499 -0.0052 20 8 -1.7310 -10.5802 -0.0068 21 8 0.1119 -7.5097 -0.0107 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5563 -0.8919 24 1 0.6242 -2.5575 0.8880 25 1 2.8721 -3.6050 0.8873 26 1 2.8721 -3.6034 -0.8927 27 1 0.5430 -4.9308 -0.0026 28 1 3.0654 -8.8500 -0.0045 29 1 1.0415 -10.6170 -0.0052 30 1 -2.5016 -7.5888 -0.0043 31 1 -3.5303 -8.9171 -0.0099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345148942.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:15 Heat of formation + Delta-G solvation = -97.515621 kcal Electronic energy + Delta-G solvation = -17332.633590 eV Core-core repulsion = 14193.291408 eV Total energy + Delta-G solvation = -3139.342182 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.97057 -40.71738 -40.26358 -36.77055 -35.05203 -34.90047 -34.14608 -32.16057 -30.88799 -27.21446 -25.49691 -23.45072 -22.72115 -22.25968 -21.35139 -19.86928 -18.88148 -18.43837 -17.96809 -17.81621 -16.87742 -16.49912 -16.44462 -15.80545 -15.60524 -15.24241 -14.78446 -14.42056 -14.31144 -14.20750 -14.12796 -13.23513 -12.96510 -12.53112 -12.28608 -11.93030 -11.71184 -11.52244 -11.27393 -11.24143 -10.91752 -10.61355 -10.29180 -9.88590 -8.23617 -6.33588 -0.55082 0.76023 1.14651 1.42383 1.44216 1.56469 1.93875 1.96923 2.00695 2.38355 2.45956 3.11994 3.49349 3.69788 3.85818 4.33686 4.37006 4.44659 4.47786 4.73743 4.84099 5.07885 5.09898 5.36632 5.47241 5.57482 5.69621 5.78287 6.14751 6.16548 6.39144 6.79330 6.92827 7.00984 7.36016 8.88385 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.033737 B = 0.003903 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.758597 B = 7171.903282 C = 7981.214619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.020 3.980 10 C 0.137 3.863 11 N -0.701 5.701 12 C 0.594 3.406 13 O -0.552 6.552 14 C -0.047 4.047 15 C -0.128 4.128 16 C -0.125 4.125 17 C -0.059 4.059 18 C 0.612 3.388 19 N -0.819 5.819 20 O -0.552 6.552 21 O -0.149 6.149 22 H 0.265 0.735 23 H 0.010 0.990 24 H 0.011 0.989 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.414 0.586 28 H 0.183 0.817 29 H 0.188 0.812 30 H 0.420 0.580 31 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.804 -16.253 -0.013 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.017 4.017 10 C 0.014 3.986 11 N -0.351 5.351 12 C 0.380 3.620 13 O -0.433 6.433 14 C -0.102 4.102 15 C -0.148 4.148 16 C -0.145 4.145 17 C -0.113 4.113 18 C 0.396 3.604 19 N -0.383 5.383 20 O -0.432 6.432 21 O -0.045 6.045 22 H 0.074 0.926 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.250 0.750 28 H 0.200 0.800 29 H 0.206 0.794 30 H 0.251 0.749 31 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.269 -16.600 -0.014 16.919 hybrid contribution -0.403 1.266 -0.005 1.328 sum -3.671 -15.335 -0.019 15.768 Atomic orbital electron populations 1.70056 1.07514 1.27914 1.51105 1.25839 0.95753 1.03019 0.94461 0.85418 0.79073 0.78906 0.77780 1.18856 1.20394 1.20384 1.21492 0.93711 0.91760 1.51359 0.92025 1.19162 0.94277 0.91644 0.96615 1.21428 0.95161 0.81088 1.00881 1.46101 1.11435 1.05496 1.72024 1.16914 0.86118 0.81839 0.77106 1.90841 1.13191 1.86629 1.52614 1.22265 0.80555 0.96179 1.11156 1.22231 1.02468 0.89441 1.00702 1.22242 0.89257 1.02515 1.00533 1.22531 0.96556 0.80920 1.11301 1.16570 0.82292 0.85537 0.76020 1.43601 1.08736 1.11436 1.74528 1.90909 1.85065 1.14753 1.52437 1.84022 1.23181 1.26808 1.70492 0.92579 0.97116 0.97102 0.92426 0.92417 0.75025 0.80014 0.79441 0.74895 0.74362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.78 13.29 21.45 0.28 -52.50 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.96 42.40 29.54 68.60 2.03 44.43 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -29.26 9.11 25.60 0.23 -29.03 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 9 C 0.02 0.98 5.09 29.85 0.15 1.13 16 10 C 0.14 5.51 5.61 86.38 0.48 6.00 16 11 N -0.70 -23.17 5.55 -466.51 -2.59 -25.76 16 12 C 0.59 19.30 7.81 86.62 0.68 19.98 16 13 O -0.55 -21.23 16.86 -4.06 -0.07 -21.30 16 14 C -0.05 -1.24 7.14 24.26 0.17 -1.06 16 15 C -0.13 -2.82 10.60 22.32 0.24 -2.58 16 16 C -0.13 -2.47 10.60 22.32 0.24 -2.23 16 17 C -0.06 -1.24 7.14 24.26 0.17 -1.06 16 18 C 0.61 12.10 8.08 86.62 0.70 12.80 16 19 N -0.82 -10.00 8.87 -175.99 -1.56 -11.56 16 20 O -0.55 -14.19 17.70 -4.07 -0.07 -14.26 16 21 O -0.15 -3.36 10.14 -7.37 -0.07 -3.44 16 22 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 23 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.41 11.91 8.23 -92.71 -0.76 11.15 16 28 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.19 2.90 8.06 -2.91 -0.02 2.87 16 30 H 0.42 3.93 8.59 -92.71 -0.80 3.13 16 31 H 0.42 3.50 8.93 -92.70 -0.83 2.67 16 Total: -1.00 -67.23 290.38 0.29 -66.94 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -1.18 Total: 12.60 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 3.53 Total: 4.84 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -3.87 Total: -89.82 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -0.22 Total: -39.00 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -67.23 0.29 -66.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345148942.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.572 kcal (2) G-P(sol) polarization free energy of solvation -67.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds