Wall clock time and date at job start Sun Mar 29 2020 22:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76193 * 102.99812 * 2 1 4 4 C 1.39188 * 119.65150 * 180.02562 * 3 2 1 5 5 C 1.39464 * 118.92844 * 180.27958 * 4 3 2 6 6 C 1.48164 * 120.87896 * 179.70184 * 5 4 3 7 7 O 1.21510 * 119.99821 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99999 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00143 * 180.02562 * 8 6 5 10 10 C 1.50693 * 109.47289 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00268 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00118 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99825 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00250 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47233 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47457 * 119.99755 * 14 12 10 17 17 H 1.48498 * 109.47145 * 239.99751 * 14 12 10 18 18 C 1.40055 * 118.24220 * 359.45977 * 5 4 3 19 19 C 1.37945 * 119.18801 * 0.56282 * 18 5 4 20 20 N 1.31912 * 121.00385 * 359.70188 * 19 18 5 21 21 H 1.08999 * 109.47022 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47239 * 299.99513 * 1 2 3 23 23 H 1.09003 * 109.47368 * 59.99997 * 1 2 3 24 24 H 1.08002 * 120.53174 * 359.97438 * 4 3 2 25 25 H 0.96998 * 120.00042 * 359.97438 * 8 6 5 26 26 H 1.09000 * 109.46859 * 299.99511 * 9 8 6 27 27 H 1.09003 * 109.47203 * 59.99013 * 9 8 6 28 28 H 0.96993 * 119.99799 * 180.02562 * 13 12 10 29 29 H 1.08006 * 120.40364 * 180.28544 * 18 5 4 30 30 H 1.07996 * 119.49813 * 179.72394 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5438 2.1157 -0.0005 5 6 3.8403 3.4784 0.0054 6 6 5.2446 3.9511 0.0117 7 8 6.1560 3.1475 0.0122 8 7 5.5109 5.2722 0.0180 9 6 6.8993 5.7396 0.0236 10 6 6.9221 7.2464 0.0293 11 1 5.9952 7.8005 0.0284 12 6 8.1265 7.9176 0.0347 13 7 9.2554 7.2428 0.0354 14 14 8.1548 9.7853 0.0411 15 1 6.7625 10.3016 0.0386 16 1 8.8591 10.2657 1.2571 17 1 8.8655 10.2737 -1.1679 18 6 2.7757 4.3884 0.0001 19 6 1.4818 3.9099 0.0010 20 7 1.2367 2.6138 0.0010 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 4.3361 1.3817 -0.0005 25 1 4.7833 5.9137 0.0179 26 1 7.4051 5.3649 0.9135 27 1 7.4100 5.3721 -0.8665 28 1 10.1026 7.7150 0.0395 29 1 2.9654 5.4516 -0.0002 30 1 0.6571 4.6072 0.0015 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349543027.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:10 Heat of formation + Delta-G solvation = -10.304940 kcal Electronic energy + Delta-G solvation = -15247.142564 eV Core-core repulsion = 12554.334991 eV Total energy + Delta-G solvation = -2692.807572 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.34458 -38.47055 -34.41850 -32.94427 -32.20798 -31.33262 -29.10090 -27.51134 -24.73179 -23.71899 -22.41868 -20.32857 -18.61120 -16.82452 -16.54524 -16.18852 -15.33616 -15.04895 -14.83753 -14.83037 -14.23309 -14.15469 -13.93114 -13.42351 -13.18413 -12.68847 -12.10770 -11.96351 -11.83720 -11.02359 -10.97283 -10.69237 -10.40399 -10.09684 -10.01049 -9.79741 -9.47425 -9.30500 -8.82730 -8.03998 -7.72472 -6.23137 -4.30803 0.70286 0.92471 1.28383 2.08198 3.14667 3.19957 3.27021 3.29807 3.76175 3.90821 4.28746 4.41988 4.83324 4.90623 4.97487 4.99156 5.01586 5.13240 5.13392 5.55300 5.60362 5.78033 6.04868 6.37778 7.18427 7.23784 7.41000 7.54648 7.56593 7.87790 8.43681 8.65085 8.88879 9.35732 10.87067 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.054763 B = 0.003946 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.167462 B = 7093.571325 C = 7584.277030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.076 6.076 3 C 0.112 3.888 4 C -0.096 4.096 5 C -0.057 4.057 6 C 0.538 3.462 7 O -0.541 6.541 8 N -0.698 5.698 9 C 0.248 3.752 10 C -0.546 4.546 11 H 0.064 0.936 12 C 0.064 3.936 13 N -0.884 5.884 14 Si 0.905 3.095 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.281 1.281 18 C -0.149 4.149 19 C 0.109 3.891 20 N -0.484 5.484 21 H 0.102 0.898 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.152 0.848 25 H 0.392 0.608 26 H 0.031 0.969 27 H 0.031 0.969 28 H 0.266 0.734 29 H 0.145 0.855 30 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.659 -8.668 -0.074 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.163 5.837 3 C -0.137 4.137 4 C -0.122 4.122 5 C -0.070 4.070 6 C 0.321 3.679 7 O -0.420 6.420 8 N -0.346 5.346 9 C 0.127 3.873 10 C -0.584 4.584 11 H 0.083 0.917 12 C -0.140 4.140 13 N -0.521 5.521 14 Si 0.732 3.268 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.172 4.172 19 C -0.050 4.050 20 N -0.198 5.198 21 H 0.120 0.880 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.169 0.831 25 H 0.226 0.774 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.162 0.838 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -16.977 -10.518 -0.072 19.971 hybrid contribution -0.197 2.835 0.001 2.842 sum -17.174 -7.683 -0.071 18.814 Atomic orbital electron populations 1.23441 0.93888 1.05954 1.06658 1.85622 1.07520 0.98785 1.91799 1.22926 0.91742 0.98436 1.00571 1.21793 0.95895 0.96120 0.98425 1.20641 0.94919 0.93668 0.97802 1.18115 0.87084 0.83839 0.78819 1.90752 1.46150 1.54405 1.50655 1.46439 1.12221 1.05033 1.70890 1.19228 0.75465 0.94407 0.98157 1.21223 0.93155 0.90448 1.53584 0.91747 1.24956 0.95213 0.99246 0.94554 1.69981 0.97591 1.35891 1.48637 0.86335 0.78265 0.84347 0.77817 1.19593 1.20734 1.20741 1.22373 0.93181 1.01180 1.00472 1.22618 0.95998 0.91280 0.95125 1.67849 1.35028 1.02967 1.13937 0.87986 0.89492 0.89499 0.83070 0.77437 0.95068 0.95077 0.92380 0.83769 0.81894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 10.01 101.05 1.01 -0.06 16 2 S -0.08 -0.86 22.55 -107.50 -2.42 -3.28 16 3 C 0.11 1.53 7.00 -16.96 -0.12 1.42 16 4 C -0.10 -1.47 9.41 -38.77 -0.36 -1.84 16 5 C -0.06 -0.92 5.90 -104.68 -0.62 -1.54 16 6 C 0.54 10.91 7.80 -12.18 -0.10 10.81 16 7 O -0.54 -13.01 16.44 5.36 0.09 -12.93 16 8 N -0.70 -14.42 5.51 -62.33 -0.34 -14.76 16 9 C 0.25 6.42 5.43 -5.20 -0.03 6.39 16 10 C -0.55 -14.44 9.28 -34.44 -0.32 -14.76 16 11 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 12 C 0.06 1.75 5.46 -17.81 -0.10 1.65 16 13 N -0.88 -25.59 13.29 55.43 0.74 -24.85 16 14 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 18 C -0.15 -1.89 9.61 -39.01 -0.37 -2.26 16 19 C 0.11 1.25 11.16 -17.62 -0.20 1.05 16 20 N -0.48 -6.27 9.40 -12.16 -0.11 -6.38 16 21 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 22 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 23 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 24 H 0.15 2.35 7.74 -52.49 -0.41 1.95 16 25 H 0.39 6.79 6.46 -40.82 -0.26 6.53 16 26 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.14 1.52 6.53 -52.48 -0.34 1.18 16 30 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 284.49 15.07 4.29 4.29 Total: -1.00 -31.66 284.49 -7.07 -38.73 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -3.08 Total: 2.93 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.20 Total: 0.86 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.28 Total: -46.00 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.42 Total: -3.28 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.66 -7.07 -38.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349543027.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.424 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds