Wall clock time and date at job start Sun Mar 29 2020 22:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76193 * 102.99812 * 2 1 4 4 C 1.39188 * 119.65150 * 180.02562 * 3 2 1 5 5 C 1.39464 * 118.92844 * 180.27958 * 4 3 2 6 6 C 1.48164 * 120.87896 * 179.70184 * 5 4 3 7 7 O 1.21510 * 119.99821 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99999 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00143 * 180.02562 * 8 6 5 10 10 C 1.50693 * 109.47289 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00268 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00118 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99825 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00250 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47233 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47457 * 119.99755 * 14 12 10 17 17 H 1.48498 * 109.47145 * 239.99751 * 14 12 10 18 18 C 1.40055 * 118.24220 * 359.45977 * 5 4 3 19 19 C 1.37945 * 119.18801 * 0.56282 * 18 5 4 20 20 N 1.31912 * 121.00385 * 359.70188 * 19 18 5 21 21 H 1.08999 * 109.47022 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47239 * 299.99513 * 1 2 3 23 23 H 1.09003 * 109.47368 * 59.99997 * 1 2 3 24 24 H 1.08002 * 120.53174 * 359.97438 * 4 3 2 25 25 H 0.96998 * 120.00042 * 359.97438 * 8 6 5 26 26 H 1.09000 * 109.46859 * 299.99511 * 9 8 6 27 27 H 1.09003 * 109.47203 * 59.99013 * 9 8 6 28 28 H 0.96993 * 119.99799 * 180.02562 * 13 12 10 29 29 H 1.08006 * 120.40364 * 180.28544 * 18 5 4 30 30 H 1.07996 * 119.49813 * 179.72394 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5438 2.1157 -0.0005 5 6 3.8403 3.4784 0.0054 6 6 5.2446 3.9511 0.0117 7 8 6.1560 3.1475 0.0122 8 7 5.5109 5.2722 0.0180 9 6 6.8993 5.7396 0.0236 10 6 6.9221 7.2464 0.0293 11 1 5.9952 7.8005 0.0284 12 6 8.1265 7.9176 0.0347 13 7 9.2554 7.2428 0.0354 14 14 8.1548 9.7853 0.0411 15 1 6.7625 10.3016 0.0386 16 1 8.8591 10.2657 1.2571 17 1 8.8655 10.2737 -1.1679 18 6 2.7757 4.3884 0.0001 19 6 1.4818 3.9099 0.0010 20 7 1.2367 2.6138 0.0010 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 4.3361 1.3817 -0.0005 25 1 4.7833 5.9137 0.0179 26 1 7.4051 5.3649 0.9135 27 1 7.4100 5.3721 -0.8665 28 1 10.1026 7.7150 0.0395 29 1 2.9654 5.4516 -0.0002 30 1 0.6571 4.6072 0.0015 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349543027.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:09 Heat of formation + Delta-G solvation = -32.622496 kcal Electronic energy + Delta-G solvation = -15248.110326 eV Core-core repulsion = 12554.334991 eV Total energy + Delta-G solvation = -2693.775334 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.58056 -40.00455 -36.32622 -34.62461 -33.70311 -32.40541 -29.84714 -29.38580 -26.19124 -24.90695 -24.09429 -21.91382 -20.08217 -18.33851 -17.89482 -17.49437 -16.79389 -16.62379 -16.39375 -16.17340 -15.56140 -15.33933 -14.90401 -14.67910 -14.24687 -14.10459 -13.96294 -13.53980 -12.96347 -12.84937 -12.76697 -12.23606 -11.53598 -11.48364 -11.38753 -11.20051 -10.89214 -10.84330 -10.72870 -9.97117 -8.63763 -8.30597 -6.47567 -0.47215 -0.13254 0.36753 1.30963 1.44626 1.45519 1.58963 1.75665 2.16053 2.42550 2.65840 3.05118 3.48962 3.54538 3.84058 3.87368 4.03819 4.36607 4.39778 4.55675 4.63954 4.93834 4.95135 5.07546 5.18364 5.33939 5.40262 5.60492 5.79868 6.53877 6.60268 6.71360 7.15541 7.30238 8.81897 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.054763 B = 0.003946 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.167462 B = 7093.571325 C = 7584.277030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.090 6.090 3 C 0.107 3.893 4 C -0.113 4.113 5 C -0.076 4.076 6 C 0.538 3.462 7 O -0.589 6.589 8 N -0.690 5.690 9 C 0.264 3.736 10 C -0.556 4.556 11 H 0.088 0.912 12 C 0.004 3.996 13 N -0.931 5.931 14 Si 0.986 3.014 15 H -0.250 1.250 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.139 4.139 19 C 0.122 3.878 20 N -0.483 5.483 21 H 0.128 0.872 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.136 0.864 25 H 0.411 0.589 26 H -0.007 1.007 27 H -0.007 1.007 28 H 0.269 0.731 29 H 0.169 0.831 30 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.033 -7.051 -0.077 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S 0.148 5.852 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.088 4.088 6 C 0.325 3.675 7 O -0.471 6.471 8 N -0.339 5.339 9 C 0.141 3.859 10 C -0.594 4.594 11 H 0.106 0.894 12 C -0.196 4.196 13 N -0.569 5.569 14 Si 0.809 3.191 15 H -0.173 1.173 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.162 4.162 19 C -0.038 4.038 20 N -0.196 5.196 21 H 0.146 0.854 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.154 0.846 25 H 0.248 0.752 26 H 0.011 0.989 27 H 0.011 0.989 28 H 0.078 0.922 29 H 0.187 0.813 30 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -20.411 -8.911 -0.075 22.272 hybrid contribution 0.757 2.217 0.002 2.343 sum -19.655 -6.694 -0.073 20.764 Atomic orbital electron populations 1.23552 0.90727 1.07755 1.06855 1.85729 1.10901 0.97237 1.91308 1.23089 0.91065 0.99853 1.00062 1.21741 0.96678 0.95719 0.99837 1.20240 0.92841 0.94719 1.01004 1.18763 0.88771 0.83040 0.76958 1.90717 1.48337 1.55502 1.52523 1.46090 1.10741 1.05878 1.71230 1.18687 0.77717 0.94804 0.94663 1.21624 0.94266 0.90422 1.53058 0.89380 1.26075 0.94653 1.05071 0.93773 1.70143 0.98514 1.38419 1.49837 0.85086 0.79244 0.77148 0.77594 1.17328 1.20570 1.20581 1.22639 0.92695 1.01769 0.99126 1.23356 0.96563 0.91325 0.92533 1.67982 1.34467 1.03606 1.13581 0.85374 0.89221 0.89223 0.84637 0.75167 0.98882 0.98888 0.92193 0.81330 0.77325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 10.01 113.37 1.14 -0.51 16 2 S -0.09 -1.95 22.55 -56.49 -1.27 -3.22 16 3 C 0.11 2.82 7.00 84.84 0.59 3.41 16 4 C -0.11 -3.53 9.41 22.79 0.21 -3.31 16 5 C -0.08 -2.42 5.90 -19.90 -0.12 -2.54 16 6 C 0.54 22.64 7.80 86.88 0.68 23.31 16 7 O -0.59 -30.25 16.44 -3.75 -0.06 -30.31 16 8 N -0.69 -29.00 5.51 -469.42 -2.58 -31.58 16 9 C 0.26 14.27 5.43 85.63 0.46 14.74 16 10 C -0.56 -29.44 9.28 25.60 0.24 -29.21 16 11 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 12 C 0.00 0.22 5.46 84.65 0.46 0.68 16 13 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 14 Si 0.99 41.31 29.54 68.60 2.03 43.33 16 15 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 16 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 18 C -0.14 -3.16 9.61 22.64 0.22 -2.94 16 19 C 0.12 2.30 11.16 84.61 0.94 3.24 16 20 N -0.48 -11.11 9.40 -192.38 -1.81 -12.92 16 21 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.14 4.55 7.74 -2.91 -0.02 4.52 16 25 H 0.41 13.74 6.46 -92.71 -0.60 13.14 16 26 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.17 2.92 6.53 -2.91 -0.02 2.90 16 30 H 0.21 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -72.06 284.49 1.98 -70.08 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.57 Total: 12.85 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 4.83 Total: 6.89 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -4.11 Total: -99.62 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.06 Total: -30.31 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -1.27 Total: -3.22 kcal Total: -72.06 1.98 -70.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349543027.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.453 kcal (2) G-P(sol) polarization free energy of solvation -72.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds