Wall clock time and date at job start Sun Mar 29 2020 23:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34878 * 117.00198 * 2 1 4 4 O 1.21603 * 119.99518 * 0.02562 * 3 2 1 5 5 C 1.46630 * 120.00306 * 179.97438 * 3 2 1 6 6 C 1.36445 * 125.86016 * 180.25375 * 5 3 2 7 7 C 1.41250 * 107.00577 * 180.13741 * 6 5 3 8 8 C 1.47398 * 126.45455 * 179.89843 * 7 6 5 9 9 O 1.21604 * 119.99857 * 359.70751 * 8 7 6 10 10 N 1.34779 * 119.99899 * 179.70999 * 8 7 6 11 11 C 1.46499 * 119.99872 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.46992 * 179.97438 * 11 10 8 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.38241 * 107.08929 * 359.62680 * 7 6 5 21 21 N 1.34234 * 108.41525 * 0.23439 * 20 7 6 22 22 H 0.96998 * 125.40012 * 179.97438 * 21 20 7 23 23 H 1.08996 * 109.46934 * 60.00134 * 1 2 3 24 24 H 1.08998 * 109.46909 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47288 * 300.00021 * 1 2 3 26 26 H 1.08003 * 126.49777 * 359.97438 * 6 5 3 27 27 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 28 28 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 29 29 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 30 30 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 31 31 H 1.08006 * 125.79447 * 180.26027 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2216 0.0005 5 6 3.5286 1.2785 0.0006 6 6 4.2689 2.4247 0.0055 7 6 5.6277 2.0388 0.0009 8 6 6.7941 2.9400 0.0016 9 8 6.6313 4.1451 0.0012 10 7 8.0410 2.4284 0.0027 11 6 9.2002 3.3242 0.0028 12 6 10.4664 2.5070 0.0047 13 1 10.4130 1.4283 0.0052 14 6 11.6932 3.1365 0.0046 15 7 11.7582 4.4499 0.0034 16 14 13.2626 2.1235 0.0062 17 1 13.2995 1.2658 -1.2056 18 1 14.4378 3.0315 0.0065 19 1 13.2985 1.2680 1.2195 20 6 5.6576 0.6567 0.0018 21 7 4.3934 0.2053 0.0015 22 1 4.1301 -0.7283 0.0017 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.8882 3.4353 0.0093 27 1 8.1708 1.4672 0.0033 28 1 9.1731 3.9535 0.8924 29 1 9.1741 3.9523 -0.8876 30 1 12.6213 4.8928 0.0037 31 1 6.5470 0.0441 0.0030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351589765.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:11 Heat of formation + Delta-G solvation = -110.949710 kcal Electronic energy + Delta-G solvation = -17299.358845 eV Core-core repulsion = 14159.434117 eV Total energy + Delta-G solvation = -3139.924728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.68330 -41.07736 -39.91669 -37.58450 -36.09705 -34.33860 -32.53939 -31.30876 -29.37484 -28.32529 -25.35675 -24.18642 -23.32987 -21.45065 -20.89731 -20.23731 -18.46639 -18.15691 -17.54428 -17.17484 -17.01985 -16.54282 -16.17399 -15.88178 -15.23841 -14.79167 -14.70064 -14.32841 -14.20950 -13.96532 -13.79959 -13.47955 -13.07360 -12.87731 -12.63216 -12.19838 -11.95236 -11.89057 -11.46087 -10.93463 -10.74618 -10.30747 -9.83143 -9.50107 -8.23830 -6.40531 0.06769 0.75643 1.46684 1.47759 1.51928 1.59834 1.84153 1.99811 2.38035 2.57415 2.70089 3.11473 3.75417 3.84201 4.05445 4.19865 4.29970 4.33217 4.63414 4.73447 4.81393 5.13885 5.16811 5.29954 5.31098 5.47555 5.53647 5.76483 5.89434 6.33596 6.55948 6.70372 6.99794 7.28649 7.56321 8.88524 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.058619 B = 0.003613 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.545767 B = 7747.243587 C = 8204.341558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.543 3.457 4 O -0.531 6.531 5 C -0.056 4.056 6 C -0.056 4.056 7 C -0.259 4.259 8 C 0.568 3.432 9 O -0.613 6.613 10 N -0.698 5.698 11 C 0.266 3.734 12 C -0.553 4.553 13 H 0.091 0.909 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.987 3.013 17 H -0.260 1.260 18 H -0.290 1.290 19 H -0.260 1.260 20 C 0.132 3.868 21 N -0.489 5.489 22 H 0.449 0.551 23 H 0.063 0.937 24 H 0.140 0.860 25 H 0.063 0.937 26 H 0.137 0.863 27 H 0.410 0.590 28 H -0.013 1.013 29 H -0.013 1.013 30 H 0.268 0.732 31 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.619 -18.594 0.002 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.273 6.273 3 C 0.390 3.610 4 O -0.421 6.421 5 C -0.165 4.165 6 C -0.082 4.082 7 C -0.268 4.268 8 C 0.358 3.642 9 O -0.496 6.496 10 N -0.347 5.347 11 C 0.143 3.857 12 C -0.591 4.591 13 H 0.109 0.891 14 C -0.198 4.198 15 N -0.573 5.573 16 Si 0.810 3.190 17 H -0.184 1.184 18 H -0.216 1.216 19 H -0.185 1.185 20 C -0.014 4.014 21 N -0.085 5.085 22 H 0.293 0.707 23 H 0.082 0.918 24 H 0.158 0.842 25 H 0.082 0.918 26 H 0.155 0.845 27 H 0.247 0.753 28 H 0.004 0.996 29 H 0.004 0.996 30 H 0.076 0.924 31 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -17.979 -17.492 0.002 25.084 hybrid contribution 0.546 -0.012 0.001 0.546 sum -17.432 -17.504 0.003 24.704 Atomic orbital electron populations 1.23635 0.73662 1.06179 1.02785 1.86525 1.25763 1.30810 1.84201 1.19776 0.86803 0.82065 0.72387 1.90913 1.66037 1.37171 1.48021 1.18616 0.86989 0.88087 1.22852 1.21078 0.91585 0.97845 0.97663 1.19532 0.92414 0.94022 1.20860 1.18044 0.83383 0.87233 0.75581 1.90708 1.86906 1.17902 1.54118 1.45914 1.04855 1.11103 1.72840 1.18565 0.83250 0.89780 0.94109 1.21608 0.90336 0.94431 1.52705 0.89134 1.26105 1.03657 0.96116 0.93953 1.70151 1.26809 1.10200 1.50103 0.85184 0.76393 0.77872 0.79602 1.18447 1.21570 1.18457 1.23121 0.88931 0.93093 0.96213 1.41600 1.04586 1.09563 1.52727 0.70703 0.91839 0.84212 0.91830 0.84497 0.75332 0.99552 0.99550 0.92354 0.74899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.36 -5.91 10.58 -57.91 -0.61 -6.52 16 3 C 0.54 12.89 7.93 70.01 0.56 13.45 16 4 O -0.53 -16.24 16.65 19.50 0.32 -15.91 16 5 C -0.06 -1.33 7.02 39.97 0.28 -1.05 16 6 C -0.06 -1.73 10.37 22.59 0.23 -1.50 16 7 C -0.26 -8.01 6.13 -20.12 -0.12 -8.13 16 8 C 0.57 24.37 7.81 86.65 0.68 25.05 16 9 O -0.61 -33.16 16.92 -4.04 -0.07 -33.23 16 10 N -0.70 -29.21 5.54 -470.13 -2.60 -31.82 16 11 C 0.27 14.62 5.43 85.63 0.46 15.08 16 12 C -0.55 -29.38 9.28 25.60 0.24 -29.14 16 13 H 0.09 4.19 7.60 -2.91 -0.02 4.16 16 14 C 0.00 0.05 5.46 84.66 0.46 0.52 16 15 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 16 Si 0.99 41.39 29.54 68.60 2.03 43.41 16 17 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 18 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 20 C 0.13 2.33 11.43 84.33 0.96 3.30 16 21 N -0.49 -7.18 6.01 -183.40 -1.10 -8.28 16 22 H 0.45 2.78 8.96 -92.71 -0.83 1.95 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.14 4.80 8.06 -2.91 -0.02 4.78 16 27 H 0.41 12.98 7.23 -92.71 -0.67 12.31 16 28 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 29 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 30 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.23 1.93 7.44 -2.91 -0.02 1.91 16 Total: -1.00 -83.20 289.56 2.88 -80.32 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -0.32 Total: 9.12 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 4.95 Total: 19.10 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -3.42 Total: -96.29 kcal Atomic # 8 Polarization: -55.31 SS G_CDS: -0.36 Total: -55.66 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -83.20 2.88 -80.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351589765.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.628 kcal (2) G-P(sol) polarization free energy of solvation -83.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds