Wall clock time and date at job start Sun Mar 29 2020 23:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34810 * 117.00452 * 2 1 4 4 O 1.21543 * 120.00001 * 0.02562 * 3 2 1 5 5 C 1.47142 * 120.00409 * 180.02562 * 3 2 1 6 6 C 1.38007 * 125.91170 * 179.69382 * 5 3 2 7 7 C 1.39428 * 107.44794 * 179.84027 * 6 5 3 8 8 C 1.37939 * 107.47383 * 0.41469 * 7 6 5 9 9 C 1.47325 * 125.89235 * 179.74060 * 8 7 6 10 10 O 1.21615 * 119.99585 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00531 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00280 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47196 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99933 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99998 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99873 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00004 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46911 * 90.00146 * 17 15 13 19 19 H 1.48493 * 109.47033 * 209.99836 * 17 15 13 20 20 H 1.48502 * 109.47097 * 329.99949 * 17 15 13 21 21 N 1.36718 * 108.22332 * 359.74235 * 8 7 6 22 22 H 0.96994 * 125.66170 * 179.97438 * 21 8 7 23 23 H 1.09002 * 109.47379 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46782 * 60.00025 * 1 2 3 25 25 H 1.09004 * 109.47085 * 300.00144 * 1 2 3 26 26 H 1.08001 * 126.27418 * 359.97438 * 6 5 3 27 27 H 1.07995 * 126.26384 * 180.18998 * 7 6 5 28 28 H 0.97005 * 120.00088 * 359.97438 * 11 9 8 29 29 H 1.08997 * 109.47147 * 299.99498 * 12 11 9 30 30 H 1.09000 * 109.47211 * 59.99916 * 12 11 9 31 31 H 0.97000 * 120.00156 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2011 0.0000 4 8 1.4022 2.2205 0.0005 5 6 3.5335 1.2781 -0.0006 6 6 4.2834 2.4367 -0.0066 7 6 5.6272 2.0649 -0.0011 8 6 5.6756 0.6864 -0.0014 9 6 6.8986 -0.1349 -0.0020 10 8 7.9906 0.4006 -0.0018 11 7 6.8075 -1.4795 -0.0027 12 6 8.0238 -2.2962 -0.0039 13 6 7.6489 -3.7558 -0.0039 14 1 6.6086 -4.0461 -0.0035 15 6 8.6338 -4.7206 -0.0054 16 7 8.3066 -5.9944 -0.0059 17 14 10.4331 -4.2185 -0.0068 18 1 10.9112 -4.0863 1.3930 19 1 11.2351 -5.2528 -0.7081 20 1 10.5833 -2.9171 -0.7061 21 7 4.3927 0.2135 -0.0010 22 1 4.1347 -0.7214 -0.0015 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 3.8996 3.4462 -0.0121 27 1 6.4750 2.7339 -0.0008 28 1 5.9366 -1.9067 -0.0025 29 1 8.6113 -2.0717 -0.8941 30 1 8.6124 -2.0727 0.8859 31 1 8.9995 -6.6732 -0.0066 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351605266.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:13 Heat of formation + Delta-G solvation = -104.111310 kcal Electronic energy + Delta-G solvation = -17514.734724 eV Core-core repulsion = 14375.106531 eV Total energy + Delta-G solvation = -3139.628193 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.68405 -41.17084 -40.04539 -37.60814 -36.32657 -34.50930 -32.37215 -31.57929 -29.87863 -28.51401 -25.56384 -24.03136 -22.64517 -21.58104 -21.18104 -20.46483 -19.09046 -18.30471 -17.72172 -17.56918 -17.05773 -16.52079 -16.17120 -15.39193 -15.26161 -15.08445 -14.77016 -14.46164 -14.28749 -13.94886 -13.84737 -13.83754 -13.10586 -13.07238 -12.71159 -11.99602 -11.93146 -11.89542 -11.68816 -11.28165 -10.93018 -10.25674 -10.17256 -9.55278 -8.40671 -6.48711 -0.28117 0.91000 1.34920 1.37605 1.41187 1.49228 1.82312 1.92206 2.20386 2.22303 2.28870 2.95383 3.66575 3.73608 4.08602 4.14596 4.27168 4.33495 4.68712 4.71815 4.73402 4.99445 5.02258 5.12782 5.18620 5.31448 5.35049 5.62412 6.00495 6.08134 6.49217 6.51441 6.65793 7.04631 7.21217 8.73753 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.029259 B = 0.004615 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.740302 B = 6066.265496 C = 7002.557385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.542 3.458 4 O -0.515 6.515 5 C -0.014 4.014 6 C -0.105 4.105 7 C -0.127 4.127 8 C -0.002 4.002 9 C 0.574 3.426 10 O -0.569 6.569 11 N -0.699 5.699 12 C 0.230 3.770 13 C -0.550 4.550 14 H 0.060 0.940 15 C 0.029 3.971 16 N -0.930 5.930 17 Si 0.936 3.064 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.256 1.256 21 N -0.499 5.499 22 H 0.434 0.566 23 H 0.132 0.868 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.179 0.821 27 H 0.169 0.831 28 H 0.405 0.595 29 H 0.021 0.979 30 H 0.020 0.980 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.417 13.065 0.002 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.282 6.282 3 C 0.387 3.613 4 O -0.404 6.404 5 C -0.130 4.130 6 C -0.131 4.131 7 C -0.153 4.153 8 C -0.122 4.122 9 C 0.361 3.639 10 O -0.449 6.449 11 N -0.348 5.348 12 C 0.107 3.893 13 C -0.588 4.588 14 H 0.078 0.922 15 C -0.172 4.172 16 N -0.569 5.569 17 Si 0.760 3.240 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.180 1.180 21 N -0.097 5.097 22 H 0.275 0.725 23 H 0.150 0.850 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.196 0.804 27 H 0.186 0.814 28 H 0.240 0.760 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.869 13.300 0.000 18.506 hybrid contribution 0.101 -0.981 0.013 0.987 sum -12.768 12.318 0.013 17.741 Atomic orbital electron populations 1.23648 0.73370 1.06047 1.03160 1.86562 1.26120 1.31522 1.83951 1.19889 0.86732 0.82065 0.72623 1.90878 1.65657 1.36541 1.47314 1.19573 0.86798 0.88625 1.17970 1.21537 0.91165 0.97943 1.02417 1.21490 0.97993 0.91717 1.04086 1.20580 0.82977 0.94922 1.13681 1.17561 0.87595 0.81924 0.76849 1.90777 1.28402 1.72988 1.52690 1.45946 1.11228 1.05156 1.72443 1.19233 0.84244 0.89308 0.96503 1.21249 0.95055 0.89390 1.53063 0.92162 1.25579 1.03634 0.94562 0.93438 1.69975 1.35561 1.00891 1.50448 0.85870 0.79629 0.78994 0.79521 1.18954 1.20038 1.18026 1.41955 1.04411 1.09733 1.53597 0.72484 0.85032 0.91261 0.91253 0.80358 0.81383 0.76014 0.96074 0.96192 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.57 113.37 1.20 1.58 16 2 O -0.37 -7.07 10.58 -57.22 -0.61 -7.68 16 3 C 0.54 12.32 7.95 70.16 0.56 12.88 16 4 O -0.51 -13.50 16.67 19.69 0.33 -13.17 16 5 C -0.01 -0.33 7.07 40.65 0.29 -0.04 16 6 C -0.10 -2.28 10.61 22.50 0.24 -2.04 16 7 C -0.13 -3.15 10.60 22.49 0.24 -2.92 16 8 C 0.00 -0.06 7.04 40.70 0.29 0.22 16 9 C 0.57 20.95 7.81 86.63 0.68 21.63 16 10 O -0.57 -24.67 16.87 -4.08 -0.07 -24.74 16 11 N -0.70 -26.55 5.54 -470.21 -2.61 -29.15 16 12 C 0.23 10.75 4.50 85.63 0.38 11.13 16 13 C -0.55 -29.13 9.83 25.60 0.25 -28.88 16 14 H 0.06 3.34 7.84 -2.91 -0.02 3.32 16 15 C 0.03 1.56 5.47 84.65 0.46 2.02 16 16 N -0.93 -54.15 13.96 21.45 0.30 -53.85 16 17 Si 0.94 42.48 27.47 68.60 1.88 44.37 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.26 -11.40 6.54 99.48 0.65 -10.75 16 21 N -0.50 -11.57 6.01 -172.59 -1.04 -12.60 16 22 H 0.43 8.52 8.15 -92.71 -0.76 7.76 16 23 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 27 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 28 H 0.40 13.16 7.42 -92.70 -0.69 12.48 16 29 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 30 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 31 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -67.73 286.31 2.46 -65.27 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -0.31 Total: 15.96 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 4.58 Total: 15.59 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -3.34 Total: -95.60 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -0.35 Total: -45.59 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.88 Total: 44.37 kcal Total: -67.73 2.46 -65.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351605266.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.845 kcal (2) G-P(sol) polarization free energy of solvation -67.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds