Wall clock time and date at job start Sun Mar 29 2020 22:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34769 * 120.00287 * 2 1 4 4 O 1.21290 * 120.00168 * 185.28684 * 3 2 1 5 5 C 1.50696 * 119.99983 * 5.28646 * 3 2 1 6 6 S 1.81008 * 109.47385 * 180.02562 * 5 3 2 7 7 C 1.76197 * 100.00162 * 179.97438 * 6 5 3 8 8 H 1.07999 * 120.00073 * 359.97438 * 7 6 5 9 9 C 1.38796 * 119.99931 * 179.97438 * 7 6 5 10 10 N 1.31630 * 119.99944 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99789 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47527 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46958 * 120.00112 * 11 9 7 14 14 H 1.48501 * 109.46845 * 239.99640 * 11 9 7 15 15 C 1.39950 * 119.99662 * 179.97438 * 2 1 3 16 16 C 1.39279 * 120.49333 * 113.21148 * 15 2 1 17 17 C 1.38497 * 118.36919 * 180.19565 * 16 15 2 18 18 C 1.38281 * 119.23319 * 359.52927 * 17 16 15 19 19 N 1.31854 * 120.91341 * 0.25077 * 18 17 16 20 20 C 1.31816 * 121.80370 * 0.02562 * 19 18 17 21 21 H 1.09002 * 109.47151 * 270.00408 * 1 2 3 22 22 H 1.09004 * 109.46928 * 29.99850 * 1 2 3 23 23 H 1.09001 * 109.47431 * 150.00184 * 1 2 3 24 24 H 1.09004 * 109.47027 * 299.99816 * 5 3 2 25 25 H 1.08994 * 109.47426 * 59.99811 * 5 3 2 26 26 H 0.97000 * 119.99679 * 180.02562 * 10 9 7 27 27 H 1.08003 * 120.81438 * 359.97438 * 16 15 2 28 28 H 1.07998 * 120.38585 * 179.80294 * 17 16 15 29 29 H 1.07997 * 119.54098 * 180.23037 * 18 17 16 30 30 H 1.07999 * 119.67102 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3479 1.1693 -0.0968 5 6 1.3903 2.4694 0.1202 6 16 2.5653 3.8460 0.0890 7 6 1.4513 5.2027 0.2404 8 1 0.3890 5.0232 0.3169 9 6 1.9389 6.5020 0.2613 10 7 3.2336 6.7206 0.1685 11 14 0.7578 7.9403 0.4225 12 1 -0.6341 7.4305 0.5100 13 1 1.0813 8.7112 1.6499 14 1 0.8876 8.8227 -0.7648 15 6 2.1647 -1.2120 0.0005 16 6 2.9277 -1.5881 -1.1023 17 6 3.5988 -2.7988 -1.0562 18 6 3.4984 -3.5838 0.0777 19 7 2.7712 -3.1969 1.1073 20 6 2.1124 -2.0552 1.1026 21 1 -0.3633 0.0001 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 0.6947 2.5670 -0.7133 25 1 0.8367 2.4850 1.0590 26 1 3.5743 7.6287 0.1835 27 1 2.9915 -0.9530 -1.9735 28 1 4.1972 -3.1239 -1.8944 29 1 4.0227 -4.5270 0.1204 30 1 1.5267 -1.7723 1.9647 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358074409.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:01 Heat of formation + Delta-G solvation = 9.735500 kcal Electronic energy + Delta-G solvation = -15477.012021 eV Core-core repulsion = 12785.073468 eV Total energy + Delta-G solvation = -2691.938554 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.72566 -38.98350 -35.60412 -32.47358 -32.40847 -31.12504 -28.76536 -26.79657 -25.54526 -23.72735 -23.26265 -19.80702 -17.76203 -17.43723 -16.84362 -16.71969 -16.17162 -15.03491 -14.84466 -14.48631 -14.00508 -13.84798 -13.29122 -13.23278 -13.09694 -12.70724 -12.54905 -12.32415 -11.92100 -11.10168 -11.06771 -10.80933 -10.09375 -9.94823 -9.81247 -9.63495 -9.25516 -9.11533 -8.52620 -8.29173 -6.56485 -6.26097 -3.97672 0.92424 1.17565 2.73450 2.86041 3.18981 3.21721 3.28152 3.49295 3.67028 4.15496 4.37042 4.73342 4.82567 4.86124 4.97109 5.00613 5.09383 5.25097 5.31960 5.49224 5.53029 5.58642 5.79244 5.98207 6.02914 6.04352 6.29499 6.80458 7.26311 7.55674 7.81973 8.30906 8.37275 9.19399 10.81411 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.054033 B = 0.004437 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.080514 B = 6309.491268 C = 6585.496486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.583 5.583 3 C 0.535 3.465 4 O -0.501 6.501 5 C -0.148 4.148 6 S -0.061 6.061 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.920 3.080 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.280 1.280 15 C 0.102 3.898 16 C -0.063 4.063 17 C -0.162 4.162 18 C 0.089 3.911 19 N -0.477 5.477 20 C 0.098 3.902 21 H 0.061 0.939 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.268 0.732 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.157 0.843 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.717 -17.084 -1.953 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.317 5.317 3 C 0.323 3.677 4 O -0.373 6.373 5 C -0.299 4.299 6 S 0.166 5.834 7 C -0.684 4.684 8 H 0.092 0.908 9 C -0.135 4.135 10 N -0.502 5.502 11 Si 0.746 3.254 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.205 1.205 15 C 0.009 3.991 16 C -0.091 4.091 17 C -0.182 4.182 18 C -0.068 4.068 19 N -0.186 5.186 20 C -0.061 4.061 21 H 0.080 0.920 22 H 0.101 0.899 23 H 0.089 0.911 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.078 0.922 27 H 0.154 0.846 28 H 0.156 0.844 29 H 0.174 0.826 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.838 -17.434 -1.364 17.903 hybrid contribution -2.120 1.538 -0.565 2.679 sum -5.958 -15.896 -1.929 17.085 Atomic orbital electron populations 1.21890 0.78026 1.03654 1.02505 1.45491 1.07057 1.03343 1.75803 1.20578 0.87952 0.84169 0.74953 1.90732 1.13980 1.86432 1.46136 1.23560 1.04660 0.96613 1.05045 1.85452 1.08457 0.93491 1.96004 1.22887 0.94727 0.92234 1.58526 0.90782 1.24998 0.95676 0.98393 0.94474 1.70026 1.11914 1.21635 1.46645 0.86104 0.80287 0.81045 0.77984 1.19575 1.20522 1.20542 1.18654 0.97523 0.88226 0.94745 1.21804 0.94313 0.95327 0.97630 1.22091 1.00807 0.95023 1.00283 1.22764 0.95419 0.99565 0.89011 1.67684 1.07126 1.15556 1.28185 1.22915 0.96889 0.90180 0.96145 0.92019 0.89862 0.91071 0.88906 0.88815 0.92176 0.84606 0.84449 0.82585 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.11 59.85 0.61 1.41 16 2 N -0.58 -8.35 2.95 -120.70 -0.36 -8.70 16 3 C 0.53 10.05 7.58 -10.99 -0.08 9.96 16 4 O -0.50 -11.42 15.42 5.55 0.09 -11.33 16 5 C -0.15 -2.92 4.83 36.00 0.17 -2.74 16 6 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 7 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 10 N -0.87 -25.88 13.22 55.49 0.73 -25.15 16 11 Si 0.92 21.08 29.55 -169.99 -5.02 16.06 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 C 0.10 1.42 4.85 -83.54 -0.40 1.01 16 16 C -0.06 -0.83 9.46 -39.10 -0.37 -1.20 16 17 C -0.16 -1.72 10.10 -39.47 -0.40 -2.12 16 18 C 0.09 0.96 11.18 -17.53 -0.20 0.77 16 19 N -0.48 -6.20 10.35 -13.09 -0.14 -6.33 16 20 C 0.10 1.27 11.02 -17.33 -0.19 1.08 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.08 0.80 6.48 -51.93 -0.34 0.46 16 23 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 24 H 0.09 1.65 7.24 -51.91 -0.38 1.27 16 25 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.14 1.78 8.06 -52.48 -0.42 1.35 16 28 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 283.92 15.07 4.28 4.28 Total: -1.00 -34.50 283.92 -6.51 -41.01 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -3.21 Total: -1.48 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -0.67 Total: -4.52 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.24 Total: -40.19 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.50 -6.51 -41.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358074409.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.743 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds