Wall clock time and date at job start Sun Mar 29 2020 23:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 120.00171 * 2 1 4 4 H 1.48503 * 109.46677 * 269.99776 * 3 2 1 5 5 H 1.48498 * 109.47003 * 29.99347 * 3 2 1 6 6 H 1.48496 * 109.47506 * 149.99837 * 3 2 1 7 7 C 1.40056 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99929 * 0.02562 * 7 2 1 10 10 O 1.21682 * 120.00019 * 354.27708 * 9 7 2 11 11 N 1.34776 * 119.99970 * 174.28142 * 9 7 2 12 12 C 1.46503 * 119.99833 * 5.24281 * 11 9 7 13 13 C 1.52996 * 117.49806 * 194.62385 * 12 11 9 14 14 C 1.53001 * 117.50009 * 125.96557 * 12 11 9 15 15 C 1.46500 * 120.00144 * 185.24743 * 11 9 7 16 16 H 1.09001 * 110.53807 * 173.69373 * 15 11 9 17 17 C 1.54225 * 110.60334 * 296.54203 * 15 11 9 18 18 C 1.51315 * 103.55545 * 118.51746 * 17 15 11 19 19 O 1.21226 * 125.39275 * 179.97438 * 18 17 15 20 20 N 1.33870 * 109.20769 * 359.97438 * 18 17 15 21 21 C 1.33880 * 114.47395 * 0.02562 * 20 18 17 22 22 O 1.21222 * 125.39548 * 180.02562 * 21 20 18 23 23 H 0.96996 * 120.00197 * 0.02562 * 1 2 3 24 24 H 1.09004 * 115.55095 * 340.29399 * 12 11 9 25 25 H 1.08996 * 117.50217 * 359.97438 * 13 12 11 26 26 H 1.09003 * 117.49918 * 145.02054 * 13 12 11 27 27 H 1.08991 * 117.49899 * 214.98072 * 14 12 11 28 28 H 1.09003 * 117.49526 * 359.97269 * 14 12 11 29 29 H 1.08999 * 110.60391 * 237.03657 * 17 15 11 30 30 H 1.09003 * 110.60533 * 359.97438 * 17 15 11 31 31 H 0.96993 * 122.76859 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0463 -1.4001 5 1 1.4382 2.6526 0.6999 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4806 0.0005 10 8 0.0627 -2.4831 0.1052 11 7 1.9439 -3.6449 -0.1152 12 6 3.4089 -3.6502 -0.1255 13 6 4.1074 -4.9273 -0.5964 14 6 4.1192 -4.5507 0.8872 15 6 1.2060 -4.9052 -0.2310 16 1 1.8891 -5.7317 -0.4272 17 6 0.3839 -5.1720 1.0463 18 6 -1.0450 -5.1990 0.5491 19 8 -2.0249 -5.3835 1.2385 20 7 -1.0555 -4.9868 -0.7726 21 6 0.1553 -4.8091 -1.3155 22 8 0.3750 -4.6030 -2.4897 23 1 -0.4850 0.8400 -0.0004 24 1 3.8808 -2.6987 -0.3707 25 1 3.4771 -5.7637 -0.8983 26 1 5.0391 -4.8161 -1.1512 27 1 5.0585 -4.1919 1.3078 28 1 3.4965 -5.1389 1.5613 29 1 0.6560 -6.1324 1.4840 30 1 0.5242 -4.3672 1.7679 31 1 -1.8730 -4.9643 -1.2942 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375379777.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:52 Heat of formation + Delta-G solvation = -61.228426 kcal Electronic energy + Delta-G solvation = -19254.226217 eV Core-core repulsion = 16116.457566 eV Total energy + Delta-G solvation = -3137.768651 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.33043 -38.45676 -37.79541 -36.13235 -35.14376 -32.99041 -32.25013 -30.12971 -26.71080 -25.12390 -22.30100 -21.75163 -21.55772 -20.90011 -19.09106 -17.48407 -17.11055 -16.21861 -15.83200 -15.53002 -14.73933 -14.69301 -14.42750 -13.84581 -13.66213 -13.27846 -13.03721 -12.79926 -12.38740 -12.03836 -11.53749 -11.30385 -11.17191 -10.98255 -10.57381 -10.48901 -10.31723 -10.17776 -10.02490 -9.73784 -9.56720 -8.98062 -7.86929 -7.50858 -6.36865 -4.81960 2.02587 3.03623 3.07062 3.14404 3.16817 3.49731 3.89540 4.14091 4.17530 4.36384 4.71643 4.72524 4.87210 5.16463 5.19693 5.31733 5.38366 5.65702 5.78985 5.92481 6.10131 6.19766 6.35295 6.42325 6.47487 7.15635 7.22947 7.30539 7.77818 7.83641 8.09205 8.39173 8.85278 9.07614 10.29756 10.53931 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.009563 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.237148 B = 2927.156708 C = 3707.770261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.533 4.533 8 H 0.076 0.924 9 C 0.554 3.446 10 O -0.565 6.565 11 N -0.595 5.595 12 C 0.115 3.885 13 C -0.208 4.208 14 C -0.206 4.206 15 C 0.118 3.882 16 H 0.122 0.878 17 C -0.164 4.164 18 C 0.554 3.446 19 O -0.505 6.505 20 N -0.666 5.666 21 C 0.539 3.461 22 O -0.487 6.487 23 H 0.271 0.729 24 H 0.139 0.861 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.127 0.873 31 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.643 -8.544 0.754 10.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.134 4.134 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.569 4.569 8 H 0.094 0.906 9 C 0.362 3.638 10 O -0.447 6.447 11 N -0.331 5.331 12 C 0.008 3.992 13 C -0.246 4.246 14 C -0.245 4.245 15 C 0.009 3.991 16 H 0.140 0.860 17 C -0.205 4.205 18 C 0.343 3.657 19 O -0.378 6.378 20 N -0.330 5.330 21 C 0.325 3.675 22 O -0.357 6.357 23 H 0.082 0.918 24 H 0.156 0.844 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.127 0.873 30 H 0.145 0.855 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.520 -8.381 0.637 10.056 hybrid contribution 0.106 0.850 -0.286 0.903 sum 5.627 -7.531 0.352 9.407 Atomic orbital electron populations 1.69984 1.07116 1.27751 1.34049 1.25750 0.94686 1.00494 0.92483 0.86321 0.80169 0.81108 0.78969 1.19634 1.20370 1.18691 1.20919 0.93728 0.88609 1.53635 0.90639 1.18404 0.87037 0.81827 0.76511 1.90641 1.14016 1.85188 1.54832 1.47804 1.03405 1.03982 1.77937 1.21663 0.81189 0.95565 1.00736 1.23376 1.03031 1.00548 0.97611 1.23426 1.03115 1.05808 0.92181 1.21336 0.93579 0.92176 0.91996 0.86034 1.22902 0.91677 1.05624 1.00258 1.20478 0.91981 0.72021 0.81189 1.90721 1.40123 1.47166 1.59837 1.44461 1.11436 1.65539 1.11532 1.21017 0.84446 0.72804 0.89225 1.90712 1.83602 1.44307 1.17109 0.91814 0.84367 0.89077 0.88503 0.88727 0.89113 0.87295 0.85488 0.75387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.81 11.84 55.55 0.66 -21.15 16 2 C 0.09 2.30 5.50 -17.36 -0.10 2.20 16 3 Si 0.91 19.28 29.56 -169.99 -5.02 14.26 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 7 C -0.53 -13.95 8.85 -35.63 -0.32 -14.27 16 8 H 0.08 1.78 5.84 -52.49 -0.31 1.48 16 9 C 0.55 14.39 6.80 -12.99 -0.09 14.30 16 10 O -0.56 -16.31 12.13 5.20 0.06 -16.25 16 11 N -0.60 -12.14 2.81 -160.46 -0.45 -12.59 16 12 C 0.11 1.92 6.13 -67.93 -0.42 1.51 16 13 C -0.21 -2.68 9.81 -26.70 -0.26 -2.95 16 14 C -0.21 -2.68 10.21 -26.70 -0.27 -2.96 16 15 C 0.12 2.06 3.25 -68.14 -0.22 1.84 16 16 H 0.12 1.67 5.42 -51.93 -0.28 1.39 16 17 C -0.16 -2.67 6.09 -26.94 -0.16 -2.83 16 18 C 0.55 10.44 7.81 -11.09 -0.09 10.36 16 19 O -0.50 -10.64 18.02 5.60 0.10 -10.54 16 20 N -0.67 -12.35 5.21 -11.40 -0.06 -12.41 16 21 C 0.54 10.75 6.56 -11.09 -0.07 10.68 16 22 O -0.49 -11.04 18.02 5.61 0.10 -10.94 16 23 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 24 H 0.14 2.41 6.00 -51.93 -0.31 2.10 16 25 H 0.09 1.12 5.99 -51.93 -0.31 0.81 16 26 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.13 2.39 7.39 -51.93 -0.38 2.00 16 31 H 0.41 6.86 8.96 -40.82 -0.37 6.50 16 LS Contribution 270.38 15.07 4.07 4.07 Total: -1.00 -34.01 270.38 -5.32 -39.33 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -2.79 Total: 8.34 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: -1.99 Total: 17.87 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.15 Total: -46.15 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: 0.27 Total: -37.73 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -34.01 -5.32 -39.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375379777.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.898 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds