Wall clock time and date at job start Sun Mar 29 2020 23:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 120.00171 * 2 1 4 4 H 1.48503 * 109.46677 * 269.99776 * 3 2 1 5 5 H 1.48498 * 109.47003 * 29.99347 * 3 2 1 6 6 H 1.48496 * 109.47506 * 149.99837 * 3 2 1 7 7 C 1.40056 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99929 * 0.02562 * 7 2 1 10 10 O 1.21682 * 120.00019 * 354.27708 * 9 7 2 11 11 N 1.34776 * 119.99970 * 174.28142 * 9 7 2 12 12 C 1.46503 * 119.99833 * 5.24281 * 11 9 7 13 13 C 1.52996 * 117.49806 * 194.62385 * 12 11 9 14 14 C 1.53001 * 117.50009 * 125.96557 * 12 11 9 15 15 C 1.46500 * 120.00144 * 185.24743 * 11 9 7 16 16 H 1.09001 * 110.53807 * 173.69373 * 15 11 9 17 17 C 1.54225 * 110.60334 * 296.54203 * 15 11 9 18 18 C 1.51315 * 103.55545 * 118.51746 * 17 15 11 19 19 O 1.21226 * 125.39275 * 179.97438 * 18 17 15 20 20 N 1.33870 * 109.20769 * 359.97438 * 18 17 15 21 21 C 1.33880 * 114.47395 * 0.02562 * 20 18 17 22 22 O 1.21222 * 125.39548 * 180.02562 * 21 20 18 23 23 H 0.96996 * 120.00197 * 0.02562 * 1 2 3 24 24 H 1.09004 * 115.55095 * 340.29399 * 12 11 9 25 25 H 1.08996 * 117.50217 * 359.97438 * 13 12 11 26 26 H 1.09003 * 117.49918 * 145.02054 * 13 12 11 27 27 H 1.08991 * 117.49899 * 214.98072 * 14 12 11 28 28 H 1.09003 * 117.49526 * 359.97269 * 14 12 11 29 29 H 1.08999 * 110.60391 * 237.03657 * 17 15 11 30 30 H 1.09003 * 110.60533 * 359.97438 * 17 15 11 31 31 H 0.96993 * 122.76859 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0463 -1.4001 5 1 1.4382 2.6526 0.6999 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4806 0.0005 10 8 0.0627 -2.4831 0.1052 11 7 1.9439 -3.6449 -0.1152 12 6 3.4089 -3.6502 -0.1255 13 6 4.1074 -4.9273 -0.5964 14 6 4.1192 -4.5507 0.8872 15 6 1.2060 -4.9052 -0.2310 16 1 1.8891 -5.7317 -0.4272 17 6 0.3839 -5.1720 1.0463 18 6 -1.0450 -5.1990 0.5491 19 8 -2.0249 -5.3835 1.2385 20 7 -1.0555 -4.9868 -0.7726 21 6 0.1553 -4.8091 -1.3155 22 8 0.3750 -4.6030 -2.4897 23 1 -0.4850 0.8400 -0.0004 24 1 3.8808 -2.6987 -0.3707 25 1 3.4771 -5.7637 -0.8983 26 1 5.0391 -4.8161 -1.1512 27 1 5.0585 -4.1919 1.3078 28 1 3.4965 -5.1389 1.5613 29 1 0.6560 -6.1324 1.4840 30 1 0.5242 -4.3672 1.7679 31 1 -1.8730 -4.9643 -1.2942 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375379777.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:52 Heat of formation + Delta-G solvation = -87.932709 kcal Electronic energy + Delta-G solvation = -19255.384202 eV Core-core repulsion = 16116.457566 eV Total energy + Delta-G solvation = -3138.926636 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.85687 -40.01815 -39.41053 -37.72332 -36.75210 -34.80415 -33.91701 -31.66471 -28.53176 -26.72571 -23.69400 -23.02688 -22.93967 -22.37821 -20.79345 -19.04319 -18.58539 -17.95988 -17.55978 -17.09659 -16.33432 -16.22900 -15.98624 -15.35898 -15.16365 -14.81536 -14.71769 -14.39090 -13.81604 -13.56250 -13.21790 -12.85267 -12.69465 -12.22755 -12.18051 -12.11141 -12.00053 -11.54935 -11.33462 -11.23231 -11.12296 -10.93507 -9.82131 -9.04934 -8.32361 -6.84379 0.46556 1.39047 1.39873 1.53100 1.55648 2.03261 2.22094 2.39292 2.58519 3.10874 3.22361 3.31301 3.42937 3.75540 3.91821 4.00851 4.26411 4.39491 4.53322 4.76636 4.94869 5.00038 5.05276 5.21288 5.37054 5.41027 5.64622 5.70429 6.06841 6.21267 6.28149 6.85972 6.86928 7.26745 8.37785 8.61640 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.009563 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.237148 B = 2927.156708 C = 3707.770261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.032 3.968 3 Si 0.989 3.011 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.244 1.244 7 C -0.559 4.559 8 H 0.094 0.906 9 C 0.542 3.458 10 O -0.607 6.607 11 N -0.595 5.595 12 C 0.063 3.937 13 C -0.182 4.182 14 C -0.180 4.180 15 C 0.120 3.880 16 H 0.168 0.832 17 C -0.151 4.151 18 C 0.550 3.450 19 O -0.531 6.531 20 N -0.666 5.666 21 C 0.532 3.468 22 O -0.522 6.522 23 H 0.272 0.728 24 H 0.122 0.878 25 H 0.102 0.898 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.166 0.834 30 H 0.104 0.896 31 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.385 -9.705 1.359 13.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.167 1.167 7 C -0.595 4.595 8 H 0.112 0.888 9 C 0.349 3.651 10 O -0.492 6.492 11 N -0.329 5.329 12 C -0.042 4.042 13 C -0.219 4.219 14 C -0.219 4.219 15 C 0.012 3.988 16 H 0.185 0.815 17 C -0.191 4.191 18 C 0.341 3.659 19 O -0.407 6.407 20 N -0.328 5.328 21 C 0.320 3.680 22 O -0.395 6.395 23 H 0.082 0.918 24 H 0.140 0.860 25 H 0.120 0.880 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.119 0.881 29 H 0.184 0.816 30 H 0.122 0.878 31 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 8.322 -9.590 1.250 12.759 hybrid contribution -0.729 1.116 -0.502 1.424 sum 7.592 -8.474 0.749 11.402 Atomic orbital electron populations 1.70156 1.09373 1.28800 1.36448 1.26896 0.95414 1.04751 0.91321 0.85129 0.79162 0.75634 0.79160 1.19176 1.20273 1.16657 1.21482 0.94938 0.89482 1.53582 0.88773 1.18600 0.86742 0.83673 0.76094 1.90599 1.15714 1.86610 1.56325 1.47400 1.05118 1.03556 1.76871 1.21821 0.79160 0.97141 1.06043 1.23484 1.02910 0.97747 0.97801 1.23493 1.02898 1.03158 0.92341 1.21651 0.93677 0.92168 0.91350 0.81479 1.22936 0.89344 1.07681 0.99142 1.20969 0.92909 0.71067 0.80946 1.90704 1.41289 1.48456 1.60249 1.44515 1.11592 1.64891 1.11803 1.21580 0.85347 0.71768 0.89314 1.90685 1.84183 1.45977 1.18672 0.91813 0.86004 0.87976 0.86504 0.86900 0.88079 0.81620 0.87787 0.75071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.64 11.84 21.84 0.26 -48.39 16 2 C 0.03 1.70 5.50 85.31 0.47 2.17 16 3 Si 0.99 39.84 29.56 68.60 2.03 41.87 16 4 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.24 -8.94 7.11 99.48 0.71 -8.23 16 7 C -0.56 -29.63 8.85 24.83 0.22 -29.41 16 8 H 0.09 4.44 5.84 -2.91 -0.02 4.42 16 9 C 0.54 28.61 6.80 86.36 0.59 29.19 16 10 O -0.61 -36.23 12.13 -4.29 -0.05 -36.28 16 11 N -0.59 -23.66 2.81 -779.81 -2.19 -25.85 16 12 C 0.06 1.97 6.13 44.99 0.28 2.24 16 13 C -0.18 -3.90 9.81 30.62 0.30 -3.60 16 14 C -0.18 -3.92 10.21 30.62 0.31 -3.61 16 15 C 0.12 3.92 3.25 44.85 0.15 4.07 16 16 H 0.17 3.86 5.42 -2.39 -0.01 3.85 16 17 C -0.15 -4.60 6.09 30.46 0.19 -4.42 16 18 C 0.55 20.52 7.81 87.99 0.69 21.21 16 19 O -0.53 -22.44 18.02 -2.86 -0.05 -22.49 16 20 N -0.67 -24.87 5.21 -427.81 -2.23 -27.10 16 21 C 0.53 21.09 6.56 87.99 0.58 21.67 16 22 O -0.52 -23.89 18.02 -2.85 -0.05 -23.94 16 23 H 0.27 14.91 8.29 -92.71 -0.77 14.14 16 24 H 0.12 4.14 6.00 -2.38 -0.01 4.12 16 25 H 0.10 1.99 5.99 -2.39 -0.01 1.97 16 26 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.17 3.13 8.14 -2.39 -0.02 3.11 16 30 H 0.10 3.82 7.39 -2.39 -0.02 3.80 16 31 H 0.41 14.27 8.96 -92.71 -0.83 13.44 16 Total: -1.00 -77.79 270.38 1.84 -75.96 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.37 Total: 26.71 kcal Atomic # 6 Polarization: 35.76 SS G_CDS: 3.76 Total: 39.52 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -4.16 Total: -101.34 kcal Atomic # 8 Polarization: -82.56 SS G_CDS: -0.16 Total: -82.72 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -77.79 1.84 -75.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375379777.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.976 kcal (2) G-P(sol) polarization free energy of solvation -77.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds