Wall clock time and date at job start Sun Mar 29 2020 23:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41257 * 126.70725 * 2 1 4 4 C 1.36818 * 103.84999 * 179.97438 * 3 2 1 5 5 C 1.47512 * 126.94787 * 180.02562 * 4 3 2 6 6 O 1.21586 * 119.99465 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00290 * 179.97438 * 5 4 3 8 8 C 1.47066 * 136.05557 * 180.02562 * 7 5 4 9 9 C 1.53504 * 88.04678 * 152.88612 * 8 7 5 10 10 O 1.42897 * 114.20384 * 272.50597 * 9 8 7 11 11 C 1.50697 * 114.20578 * 139.68331 * 9 8 7 12 12 H 1.08005 * 119.99898 * 359.97438 * 11 9 8 13 13 C 1.37876 * 120.00143 * 180.02562 * 11 9 8 14 14 N 1.31512 * 119.99546 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00178 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47252 * 59.99952 * 15 13 11 17 17 H 1.48499 * 109.47157 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46843 * 300.00000 * 15 13 11 19 19 C 1.47063 * 136.05633 * 0.05154 * 7 5 4 20 20 O 1.34643 * 106.10990 * 0.26019 * 4 3 2 21 21 N 1.20883 * 111.46861 * 359.53434 * 20 4 3 22 22 H 1.08995 * 109.47284 * 89.99698 * 1 2 3 23 23 H 1.09000 * 109.47257 * 209.99676 * 1 2 3 24 24 H 1.09001 * 109.47124 * 329.99443 * 1 2 3 25 25 H 1.08009 * 128.07523 * 0.02562 * 3 2 1 26 26 H 1.09002 * 113.46793 * 267.69584 * 8 7 5 27 27 H 1.08999 * 113.46805 * 38.07951 * 8 7 5 28 28 H 0.96703 * 113.99737 * 179.97438 * 10 9 8 29 29 H 0.97005 * 119.99959 * 180.02562 * 14 13 11 30 30 H 1.08994 * 113.46736 * 321.86643 * 19 7 5 31 31 H 1.09003 * 113.46602 * 92.24602 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6010 0.0006 5 6 4.8870 1.3429 0.0014 6 8 4.8828 2.5588 0.0020 7 7 6.0566 0.6731 0.0024 8 6 7.4826 1.0324 0.0039 9 6 7.7649 -0.3047 0.7032 10 8 7.6708 -0.2519 2.1281 11 6 9.0017 -1.0107 0.2104 12 1 9.6012 -0.5676 -0.5711 13 6 9.3674 -2.2227 0.7565 14 7 8.6365 -2.7629 1.7071 15 14 10.9009 -3.0975 0.1462 16 1 12.0865 -2.2315 0.3688 17 1 11.0720 -4.3723 0.8885 18 1 10.7628 -3.3846 -1.3042 19 6 6.4682 -0.7388 0.0022 20 8 3.4539 -0.7361 -0.0050 21 7 2.2848 -1.0433 0.0005 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 2.0678 2.1747 0.0004 26 1 7.9144 1.0996 -0.9947 27 1 7.7107 1.9015 0.6209 28 1 7.8487 -1.0958 2.5655 29 1 8.8939 -3.6154 2.0916 30 1 5.8339 -1.3759 0.6184 31 1 6.6285 -1.1440 -0.9970 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408296448.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:58 Heat of formation + Delta-G solvation = -1.857126 kcal Electronic energy + Delta-G solvation = -18419.953953 eV Core-core repulsion = 15284.759834 eV Total energy + Delta-G solvation = -3135.194119 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.06422 -41.35989 -39.28864 -36.10472 -35.79973 -34.13197 -33.25371 -30.60399 -29.60031 -27.50103 -26.91793 -24.63159 -23.81400 -21.69080 -20.24676 -19.47779 -18.86826 -18.59258 -17.58244 -17.18505 -16.85245 -16.40295 -15.97807 -15.21101 -14.85862 -14.60175 -14.38128 -14.21498 -14.08838 -13.81946 -13.64267 -13.41289 -12.84461 -12.75046 -12.42055 -12.22568 -12.19742 -11.72808 -11.16429 -11.15837 -10.90565 -10.68423 -10.31501 -9.75005 -8.27503 -6.44995 -0.35300 0.97514 1.40038 1.50875 1.52998 1.60313 1.81754 1.97264 2.41745 2.93598 3.06572 3.20993 3.63868 3.74942 3.93704 4.07597 4.27730 4.39911 4.59567 4.69106 4.70592 4.73207 4.78545 4.83667 4.90507 5.18552 5.19852 5.72840 5.88182 6.50707 6.61904 6.69712 7.00547 7.28879 7.45935 8.79076 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.034466 B = 0.005630 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.199874 B = 4972.046913 C = 5453.977255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.020 3.980 3 C -0.148 4.148 4 C -0.086 4.086 5 C 0.617 3.383 6 O -0.559 6.559 7 N -0.624 5.624 8 C 0.114 3.886 9 C 0.220 3.780 10 O -0.586 6.586 11 C -0.552 4.552 12 H 0.082 0.918 13 C 0.032 3.968 14 N -0.919 5.919 15 Si 0.972 3.028 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.266 1.266 19 C 0.083 3.917 20 O 0.094 5.906 21 N -0.374 5.374 22 H 0.101 0.899 23 H 0.083 0.917 24 H 0.110 0.890 25 H 0.208 0.792 26 H 0.117 0.883 27 H 0.067 0.933 28 H 0.390 0.610 29 H 0.277 0.723 30 H 0.059 0.941 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.912 2.745 -4.272 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.138 4.138 3 C -0.170 4.170 4 C -0.152 4.152 5 C 0.405 3.595 6 O -0.440 6.440 7 N -0.355 5.355 8 C -0.008 4.008 9 C 0.179 3.821 10 O -0.399 6.399 11 C -0.590 4.590 12 H 0.100 0.900 13 C -0.169 4.169 14 N -0.560 5.560 15 Si 0.797 3.203 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.191 1.191 19 C -0.040 4.040 20 O 0.027 5.973 21 N -0.081 5.081 22 H 0.120 0.880 23 H 0.102 0.898 24 H 0.128 0.872 25 H 0.225 0.775 26 H 0.135 0.865 27 H 0.085 0.915 28 H 0.246 0.754 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.463 2.633 -4.257 12.508 hybrid contribution 0.887 -0.405 0.076 0.978 sum -10.576 2.227 -4.182 11.589 Atomic orbital electron populations 1.20442 0.81764 1.05561 1.05236 1.24396 1.01207 0.87204 1.01026 1.23231 0.88656 1.02985 1.02092 1.24161 0.97224 0.84239 1.09544 1.16247 0.80460 0.85308 0.77498 1.90777 1.86222 1.12501 1.54533 1.49686 1.05532 1.12018 1.68263 1.23482 0.76485 0.99301 1.01504 1.19838 0.91554 0.91182 0.79559 1.86022 1.93465 1.40689 1.19711 1.21631 1.10137 1.05199 1.21994 0.90035 1.25808 0.99586 0.97221 0.94275 1.69333 1.39978 1.19676 1.27024 0.85375 0.78918 0.77304 0.78676 1.19642 1.21064 1.19115 1.24251 0.97020 0.80827 1.01881 1.85053 1.21873 1.22394 1.67966 1.73751 0.89427 1.25817 1.19060 0.88025 0.89834 0.87163 0.77549 0.86535 0.91468 0.75390 0.91337 0.92281 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.47 71.24 0.75 -0.31 16 2 C 0.02 0.52 7.31 43.55 0.32 0.83 16 3 C -0.15 -4.09 10.91 22.68 0.25 -3.84 16 4 C -0.09 -3.08 7.25 24.38 0.18 -2.90 16 5 C 0.62 25.37 8.07 86.69 0.70 26.07 16 6 O -0.56 -24.65 17.69 -3.99 -0.07 -24.72 16 7 N -0.62 -26.43 3.69 -861.76 -3.18 -29.61 16 8 C 0.11 4.76 8.02 83.18 0.67 5.43 16 9 C 0.22 10.45 1.59 -11.15 -0.02 10.43 16 10 O -0.59 -30.59 13.54 -148.98 -2.02 -32.61 16 11 C -0.55 -26.79 8.70 25.60 0.22 -26.56 16 12 H 0.08 3.74 7.81 -2.91 -0.02 3.71 16 13 C 0.03 1.53 5.40 84.65 0.46 1.99 16 14 N -0.92 -46.56 11.02 21.45 0.24 -46.32 16 15 Si 0.97 38.66 29.54 68.60 2.03 40.69 16 16 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 17 H -0.29 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 19 C 0.08 3.61 7.29 83.24 0.61 4.22 16 20 O 0.09 3.49 9.98 65.82 0.66 4.14 16 21 N -0.37 -12.36 12.04 -48.87 -0.59 -12.95 16 22 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.21 4.46 8.06 -2.91 -0.02 4.43 16 26 H 0.12 4.25 8.10 -2.39 -0.02 4.23 16 27 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 28 H 0.39 20.78 6.33 -74.05 -0.47 20.32 16 29 H 0.28 13.33 8.31 -92.70 -0.77 12.56 16 30 H 0.06 2.71 7.59 -2.39 -0.02 2.69 16 31 H 0.10 4.02 8.10 -2.39 -0.02 4.00 16 Total: -1.00 -59.91 280.69 1.89 -58.02 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.70 Total: 28.00 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 4.12 Total: 15.35 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -3.53 Total: -88.88 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -1.43 Total: -53.18 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -59.91 1.89 -58.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408296448.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.165 kcal (2) G-P(sol) polarization free energy of solvation -59.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds