Wall clock time and date at job start Sun Mar 29 2020 22:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47026 * 2 1 4 4 C 1.50704 * 109.47146 * 239.99627 * 2 1 3 5 5 H 1.07998 * 119.99839 * 239.99596 * 4 2 1 6 6 C 1.37879 * 119.99962 * 60.00055 * 4 2 1 7 7 N 1.31513 * 119.99644 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99552 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47549 * 60.00460 * 8 6 4 10 10 H 1.48506 * 109.46966 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47474 * 299.99667 * 8 6 4 12 12 N 1.46499 * 109.46851 * 119.99723 * 2 1 3 13 13 C 1.34778 * 119.99949 * 274.99956 * 12 2 1 14 14 O 1.21781 * 120.00113 * 0.02562 * 13 12 2 15 15 C 1.41545 * 120.00129 * 180.02562 * 13 12 2 16 16 C 1.35562 * 120.00197 * 186.53762 * 15 13 12 17 17 C 1.41723 * 119.99885 * 9.64533 * 16 15 13 18 18 C 1.37070 * 126.19570 * 224.48991 * 17 16 15 19 19 N 1.30954 * 113.85131 * 179.78541 * 18 17 16 20 20 C 1.29352 * 117.48934 * 0.52409 * 19 18 17 21 21 S 1.70914 * 110.65288 * 359.70622 * 20 19 18 22 22 H 1.09005 * 109.46838 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47078 * 60.01030 * 1 2 3 24 24 H 1.08991 * 109.47257 * 300.00233 * 1 2 3 25 25 H 0.97000 * 119.99386 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00213 * 95.00477 * 12 2 1 27 27 H 1.08004 * 120.00082 * 6.54534 * 15 13 12 28 28 H 1.07999 * 120.00022 * 189.64657 * 16 15 13 29 29 H 1.08003 * 123.07232 * 359.96153 * 18 17 16 30 30 H 1.08004 * 124.67240 * 179.72596 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4828 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.8281 -2.5201 -4.0080 10 1 1.8280 -0.4196 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8570 1.1634 2.4119 15 6 2.6193 -0.6852 3.5128 16 6 2.6238 -0.0476 4.7092 17 6 1.9724 1.2033 4.8479 18 6 2.4689 2.3076 5.4906 19 7 1.6629 3.3395 5.4694 20 6 0.5245 3.1959 4.8723 21 16 0.3744 1.6183 4.2320 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 0.5138 0.8899 25 1 0.7082 1.1606 -3.4845 26 1 2.2491 -1.6317 1.1527 27 1 2.9761 -1.7021 3.4415 28 1 3.1238 -0.4930 5.5565 29 1 3.4374 2.3258 5.9681 30 1 -0.2275 3.9667 4.7895 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492955217.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:00 Heat of formation + Delta-G solvation = 36.502144 kcal Electronic energy + Delta-G solvation = -15974.603258 eV Core-core repulsion = 13283.825393 eV Total energy + Delta-G solvation = -2690.777865 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.54652 -38.81872 -35.16419 -33.65994 -32.43295 -29.71548 -28.35028 -25.47889 -25.22734 -23.01534 -20.55300 -19.99817 -19.44150 -17.80015 -16.69563 -16.18178 -15.35916 -14.97096 -14.35098 -14.26378 -13.95938 -13.58422 -13.13762 -13.09608 -12.47042 -12.25602 -11.73601 -11.33245 -11.11930 -10.99028 -10.76867 -10.40086 -10.25726 -10.07322 -9.34242 -9.11893 -9.07524 -8.65971 -8.42364 -7.89751 -7.63787 -6.13963 -4.23331 0.43433 1.70610 2.04076 2.26522 3.18564 3.24272 3.29729 3.30784 3.98379 4.20988 4.44136 4.67963 5.10974 5.18420 5.32855 5.49653 5.61439 5.70494 6.25803 6.29584 6.52488 6.81193 6.93928 7.12867 7.43584 7.54782 7.68046 7.90060 8.05595 8.13219 8.64122 8.75729 9.09314 9.44245 10.91962 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.041276 B = 0.005431 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.196688 B = 5153.905917 C = 5492.092077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.698 5.698 13 C 0.515 3.485 14 O -0.546 6.546 15 C -0.198 4.198 16 C -0.005 4.005 17 C -0.219 4.219 18 C 0.051 3.949 19 N -0.485 5.485 20 C -0.033 4.033 21 S 0.269 5.731 22 H 0.025 0.975 23 H 0.090 0.910 24 H 0.015 0.985 25 H 0.265 0.735 26 H 0.388 0.612 27 H 0.131 0.869 28 H 0.139 0.861 29 H 0.169 0.831 30 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.144 -3.011 13.587 13.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.344 5.344 13 C 0.303 3.697 14 O -0.430 6.430 15 C -0.223 4.223 16 C -0.028 4.028 17 C -0.341 4.341 18 C -0.107 4.107 19 N -0.200 5.200 20 C -0.324 4.324 21 S 0.528 5.472 22 H 0.044 0.956 23 H 0.108 0.892 24 H 0.034 0.966 25 H 0.075 0.925 26 H 0.221 0.779 27 H 0.149 0.851 28 H 0.156 0.844 29 H 0.186 0.814 30 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -1.245 -1.961 13.071 13.276 hybrid contribution 1.441 -0.909 -0.699 1.842 sum 0.196 -2.871 12.372 12.702 Atomic orbital electron populations 1.22064 0.98373 0.99056 1.00908 1.18736 0.91028 0.94038 0.80030 0.93290 1.21189 1.32529 1.13242 0.90414 0.92191 1.24883 0.94794 0.94941 0.99054 1.69891 1.35786 1.22430 1.23990 0.86508 0.79178 0.79582 0.81825 1.20155 1.21111 1.20197 1.46588 1.63638 1.13370 1.10787 1.17244 0.80001 0.87776 0.84642 1.90878 1.51282 1.15868 1.84938 1.22476 1.04993 1.01121 0.93670 1.20435 0.94068 0.91107 0.97141 1.23779 1.01072 1.00500 1.08780 1.22255 1.00381 0.86960 1.01130 1.65929 1.03484 1.31057 1.19525 1.28430 0.99592 1.02708 1.01713 1.83755 1.10752 1.08129 1.44575 0.95553 0.89183 0.96570 0.92517 0.77929 0.85116 0.84372 0.81377 0.79439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.26 37.16 0.34 -3.19 16 2 C 0.26 6.60 2.56 -69.08 -0.18 6.42 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.54 -14.08 8.73 -34.44 -0.30 -14.38 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.79 11.32 55.43 0.63 -24.16 16 8 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.70 -14.19 5.06 -57.85 -0.29 -14.48 16 13 C 0.52 9.90 7.10 -15.00 -0.11 9.79 16 14 O -0.55 -12.11 11.17 5.12 0.06 -12.05 16 15 C -0.20 -2.82 9.83 -39.28 -0.39 -3.20 16 16 C -0.01 -0.07 9.93 -39.21 -0.39 -0.46 16 17 C -0.22 -3.33 4.67 -38.68 -0.18 -3.51 16 18 C 0.05 0.77 11.38 -18.35 -0.21 0.56 16 19 N -0.49 -7.96 10.50 -15.06 -0.16 -8.12 16 20 C -0.03 -0.49 12.20 51.72 0.63 0.14 16 21 S 0.27 4.21 19.49 -107.50 -2.10 2.12 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.39 6.81 8.50 -40.82 -0.35 6.46 16 27 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 28 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.17 2.05 8.06 -52.48 -0.42 1.63 16 30 H 0.19 2.21 8.06 -52.48 -0.42 1.78 16 LS Contribution 276.06 15.07 4.16 4.16 Total: -1.00 -31.43 276.06 -6.72 -38.15 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -3.13 Total: 5.00 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -0.87 Total: -6.14 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.18 Total: -46.77 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.06 Total: -12.05 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -2.10 Total: 2.12 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.43 -6.72 -38.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492955217.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.655 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds