Wall clock time and date at job start Sun Mar 29 2020 22:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47026 * 2 1 4 4 C 1.50704 * 109.47146 * 239.99627 * 2 1 3 5 5 H 1.07998 * 119.99839 * 239.99596 * 4 2 1 6 6 C 1.37879 * 119.99962 * 60.00055 * 4 2 1 7 7 N 1.31513 * 119.99644 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 119.99552 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47549 * 60.00460 * 8 6 4 10 10 H 1.48506 * 109.46966 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47474 * 299.99667 * 8 6 4 12 12 N 1.46499 * 109.46851 * 119.99723 * 2 1 3 13 13 C 1.34778 * 119.99949 * 274.99956 * 12 2 1 14 14 O 1.21781 * 120.00113 * 0.02562 * 13 12 2 15 15 C 1.41545 * 120.00129 * 180.02562 * 13 12 2 16 16 C 1.35562 * 120.00197 * 186.53762 * 15 13 12 17 17 C 1.41723 * 119.99885 * 9.64533 * 16 15 13 18 18 C 1.37070 * 126.19570 * 224.48991 * 17 16 15 19 19 N 1.30954 * 113.85131 * 179.78541 * 18 17 16 20 20 C 1.29352 * 117.48934 * 0.52409 * 19 18 17 21 21 S 1.70914 * 110.65288 * 359.70622 * 20 19 18 22 22 H 1.09005 * 109.46838 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47078 * 60.01030 * 1 2 3 24 24 H 1.08991 * 109.47257 * 300.00233 * 1 2 3 25 25 H 0.97000 * 119.99386 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00213 * 95.00477 * 12 2 1 27 27 H 1.08004 * 120.00082 * 6.54534 * 15 13 12 28 28 H 1.07999 * 120.00022 * 189.64657 * 16 15 13 29 29 H 1.08003 * 123.07232 * 359.96153 * 18 17 16 30 30 H 1.08004 * 124.67240 * 179.72596 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4828 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.8281 -2.5201 -4.0080 10 1 1.8280 -0.4196 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8570 1.1634 2.4119 15 6 2.6193 -0.6852 3.5128 16 6 2.6238 -0.0476 4.7092 17 6 1.9724 1.2033 4.8479 18 6 2.4689 2.3076 5.4906 19 7 1.6629 3.3395 5.4694 20 6 0.5245 3.1959 4.8723 21 16 0.3744 1.6183 4.2320 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 0.5138 0.8899 25 1 0.7082 1.1606 -3.4845 26 1 2.2491 -1.6317 1.1527 27 1 2.9761 -1.7021 3.4415 28 1 3.1238 -0.4930 5.5565 29 1 3.4374 2.3258 5.9681 30 1 -0.2275 3.9667 4.7895 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492955217.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:00 Heat of formation + Delta-G solvation = 14.614967 kcal Electronic energy + Delta-G solvation = -15975.552357 eV Core-core repulsion = 13283.825393 eV Total energy + Delta-G solvation = -2691.726964 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.93795 -40.11017 -36.90345 -34.94466 -34.30627 -31.34632 -29.77693 -27.33502 -26.64109 -24.42702 -22.19947 -21.26332 -20.91417 -19.22230 -18.10335 -17.78984 -17.06455 -16.49967 -15.96719 -15.51528 -15.40354 -14.72650 -14.66237 -14.43487 -14.21540 -13.65136 -13.45967 -12.97801 -12.85310 -12.69920 -12.47364 -12.25704 -12.15664 -11.35697 -11.09861 -10.63597 -10.61492 -10.41258 -9.93338 -9.20992 -9.06112 -8.17071 -6.34331 -0.72046 0.56478 0.87730 1.09516 1.44605 1.46435 1.54189 1.99589 2.37625 2.61354 2.86664 3.13677 3.60000 4.07019 4.23521 4.42621 4.47259 4.67078 4.78504 4.96316 5.12324 5.17305 5.24126 5.41358 5.50678 5.64265 5.74612 5.96469 6.12924 6.74108 6.87403 7.04301 7.33820 7.62042 8.88738 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.041276 B = 0.005431 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.196688 B = 5153.905917 C = 5492.092077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.273 3.727 3 H -0.003 1.003 4 C -0.548 4.548 5 H 0.072 0.928 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.272 1.272 12 N -0.700 5.700 13 C 0.509 3.491 14 O -0.583 6.583 15 C -0.214 4.214 16 C 0.019 3.981 17 C -0.230 4.230 18 C 0.043 3.957 19 N -0.508 5.508 20 C -0.031 4.031 21 S 0.233 5.767 22 H 0.037 0.963 23 H 0.063 0.937 24 H 0.017 0.983 25 H 0.265 0.735 26 H 0.403 0.597 27 H 0.171 0.829 28 H 0.191 0.809 29 H 0.197 0.803 30 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.046 -4.782 14.614 15.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.169 3.831 3 H 0.015 0.985 4 C -0.586 4.586 5 H 0.090 0.910 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.795 3.205 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.348 5.348 13 C 0.300 3.700 14 O -0.468 6.468 15 C -0.238 4.238 16 C -0.003 4.003 17 C -0.353 4.353 18 C -0.114 4.114 19 N -0.223 5.223 20 C -0.323 4.323 21 S 0.492 5.508 22 H 0.056 0.944 23 H 0.082 0.918 24 H 0.036 0.964 25 H 0.074 0.926 26 H 0.238 0.762 27 H 0.188 0.812 28 H 0.207 0.793 29 H 0.214 0.786 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.041 -3.766 14.133 14.626 hybrid contribution 1.059 -0.243 -0.918 1.422 sum 1.018 -4.009 13.215 13.847 Atomic orbital electron populations 1.21864 0.98202 0.99266 0.99642 1.18260 0.91103 0.91768 0.81954 0.98536 1.21555 1.32525 1.13534 0.91028 0.91035 1.25787 0.94907 0.95581 1.02313 1.70049 1.37023 1.23967 1.24577 0.85419 0.78586 0.78771 0.77685 1.18797 1.21250 1.19715 1.46320 1.64446 1.14023 1.09982 1.18064 0.78922 0.87528 0.85468 1.90878 1.52680 1.17699 1.85538 1.22462 1.06652 1.02938 0.91789 1.20996 0.91785 0.89383 0.98153 1.24140 1.00834 1.01849 1.08469 1.22746 1.01200 0.86545 1.00887 1.65977 1.04113 1.31867 1.20374 1.28864 0.99831 1.02783 1.00818 1.83878 1.12394 1.09177 1.45338 0.94386 0.91808 0.96401 0.92627 0.76168 0.81160 0.79254 0.78647 0.77060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.52 9.26 71.98 0.67 -5.85 16 2 C 0.27 13.96 2.56 44.25 0.11 14.07 16 3 H 0.00 -0.20 7.58 -2.39 -0.02 -0.22 16 4 C -0.55 -28.88 8.73 25.60 0.22 -28.65 16 5 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -52.71 11.32 21.45 0.24 -52.47 16 8 Si 0.97 41.90 29.54 68.60 2.03 43.93 16 9 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 12 N -0.70 -28.18 5.06 -455.12 -2.30 -30.49 16 13 C 0.51 19.20 7.10 85.06 0.60 19.81 16 14 O -0.58 -26.14 11.17 -4.61 -0.05 -26.19 16 15 C -0.21 -5.47 9.83 22.47 0.22 -5.25 16 16 C 0.02 0.41 9.93 22.51 0.22 0.63 16 17 C -0.23 -6.59 4.67 22.86 0.11 -6.49 16 18 C 0.04 1.23 11.38 84.55 0.96 2.19 16 19 N -0.51 -16.18 10.50 -201.55 -2.12 -18.29 16 20 C -0.03 -0.93 12.20 130.61 1.59 0.66 16 21 S 0.23 7.28 19.49 -56.49 -1.10 6.18 16 22 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.06 3.51 6.07 -2.39 -0.01 3.50 16 24 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 26 H 0.40 13.56 8.50 -92.71 -0.79 12.77 16 27 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 28 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 29 H 0.20 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.21 4.87 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -69.78 276.06 2.24 -67.54 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.37 Total: 17.46 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.16 Total: -7.67 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -4.18 Total: -101.25 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.05 Total: -26.19 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 7.28 SS G_CDS: -1.10 Total: 6.18 kcal Total: -69.78 2.24 -67.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492955217.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.155 kcal (2) G-P(sol) polarization free energy of solvation -69.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds