Wall clock time and date at job start Sun Mar 29 2020 22:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 120.00037 * 2 1 4 4 H 1.48495 * 109.46863 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46777 * 300.00013 * 3 2 1 6 6 H 1.48494 * 109.46957 * 60.00185 * 3 2 1 7 7 C 1.38810 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99726 * 196.31432 * 7 2 1 9 9 N 1.36930 * 120.00041 * 16.30694 * 7 2 1 10 10 C 1.46504 * 119.99894 * 41.42863 * 9 7 2 11 11 C 1.50704 * 109.46927 * 89.99630 * 10 9 7 12 12 N 1.31878 * 119.62532 * 90.00123 * 11 10 9 13 13 C 1.31856 * 121.73614 * 179.97438 * 12 11 10 14 14 C 1.38227 * 120.79373 * 0.02562 * 13 12 11 15 15 C 1.38603 * 119.17561 * 0.22987 * 14 13 12 16 16 C 1.38300 * 119.62720 * 269.97609 * 11 10 9 17 17 Cl 1.73602 * 120.43197 * 0.04979 * 16 11 10 18 18 C 1.46498 * 120.00299 * 221.42362 * 9 7 2 19 19 C 1.53006 * 117.49794 * 13.85290 * 18 9 7 20 20 C 1.53003 * 59.99957 * 252.50951 * 19 18 9 21 21 H 0.97004 * 120.00082 * 354.94843 * 1 2 3 22 22 H 1.08999 * 109.47096 * 329.99775 * 10 9 7 23 23 H 1.08995 * 109.46875 * 209.99591 * 10 9 7 24 24 H 1.07997 * 119.59876 * 179.97438 * 13 12 11 25 25 H 1.07997 * 120.40948 * 179.97438 * 14 13 12 26 26 H 1.08004 * 120.79674 * 179.74706 * 15 14 13 27 27 H 1.09004 * 115.55452 * 159.56145 * 18 9 7 28 28 H 1.09002 * 117.49851 * 0.02562 * 19 18 9 29 29 H 1.09001 * 117.49915 * 145.02111 * 19 18 9 30 30 H 1.09003 * 117.49554 * 252.50942 * 20 19 18 31 31 H 1.08996 * 117.51864 * 107.48280 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0576 -1.2211 0.2622 9 7 1.3668 -2.3640 -0.3340 10 6 0.4196 -2.3820 -1.4515 11 6 1.1517 -2.7177 -2.7252 12 7 1.2744 -3.9779 -3.0939 13 6 1.9059 -4.3186 -4.2001 14 6 2.4670 -3.3571 -5.0194 15 6 2.3636 -2.0217 -4.6630 16 6 1.6868 -1.7006 -3.4946 17 17 1.5209 -0.0444 -3.0012 18 6 1.6258 -3.5890 0.4265 19 6 2.3584 -3.4496 1.7625 20 6 3.0799 -4.0479 0.5531 21 1 -0.4850 0.8368 0.0740 22 1 -0.0470 -1.4016 -1.5481 23 1 -0.3481 -3.1329 -1.2649 24 1 1.9863 -5.3615 -4.4688 25 1 2.9832 -3.6431 -5.9239 26 1 2.7958 -1.2491 -5.2817 27 1 0.8595 -4.3605 0.3505 28 1 2.6473 -2.4463 2.0757 29 1 2.0740 -4.1293 2.5658 30 1 3.2702 -5.1211 0.5609 31 1 3.8438 -3.4385 0.0703 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528364363.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:28 Heat of formation + Delta-G solvation = 79.633840 kcal Electronic energy + Delta-G solvation = -16732.301491 eV Core-core repulsion = 14041.350250 eV Total energy + Delta-G solvation = -2690.951241 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.63293 -36.90844 -35.75439 -33.68059 -32.06317 -31.27742 -29.63737 -26.01389 -23.93777 -22.91620 -21.36213 -21.28233 -19.80087 -16.82886 -16.25499 -15.89683 -15.43327 -15.01808 -14.46909 -13.79184 -13.76129 -13.16722 -12.69555 -12.55685 -11.82715 -11.71402 -11.50802 -11.20157 -10.82626 -10.66222 -10.53944 -10.45920 -10.07693 -9.81152 -9.59867 -9.35867 -9.14714 -8.93063 -8.41839 -8.14883 -6.46955 -5.86885 -3.45316 1.51790 1.65917 2.81598 3.30983 3.40625 3.42406 4.17758 4.42742 4.92249 5.04975 5.13618 5.23583 5.36081 5.39643 5.49512 5.77137 5.99266 6.09955 6.22568 6.28667 6.33807 6.48976 6.54567 6.68490 6.84390 7.03187 7.08559 7.23416 7.49234 7.81043 8.47411 8.55167 9.11694 9.72366 10.31588 11.15215 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.012712 C = 0.008571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.248115 B = 2202.064081 C = 3265.899396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.041 3.959 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.261 4.261 8 H 0.058 0.942 9 N -0.534 5.534 10 C 0.182 3.818 11 C 0.145 3.855 12 N -0.470 5.470 13 C 0.090 3.910 14 C -0.188 4.188 15 C -0.081 4.081 16 C -0.076 4.076 17 Cl -0.034 7.034 18 C 0.135 3.865 19 C -0.194 4.194 20 C -0.225 4.225 21 H 0.258 0.742 22 H 0.123 0.877 23 H 0.048 0.952 24 H 0.149 0.851 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.640 -4.416 -7.508 9.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.160 4.160 3 Si 0.707 3.293 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.213 1.213 7 C -0.390 4.390 8 H 0.076 0.924 9 N -0.248 5.248 10 C 0.056 3.944 11 C 0.004 3.996 12 N -0.180 5.180 13 C -0.068 4.068 14 C -0.209 4.209 15 C -0.107 4.107 16 C -0.106 4.106 17 Cl -0.005 7.005 18 C 0.026 3.974 19 C -0.232 4.232 20 C -0.266 4.266 21 H 0.068 0.932 22 H 0.140 0.860 23 H 0.066 0.934 24 H 0.166 0.834 25 H 0.148 0.852 26 H 0.150 0.850 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.091 -4.727 -6.962 8.671 hybrid contribution 1.201 1.631 -0.634 2.123 sum 3.291 -3.096 -7.596 8.838 Atomic orbital electron populations 1.69795 1.05411 1.26046 1.50789 1.25123 0.94880 0.98023 0.98017 0.86563 0.80444 0.84600 0.77687 1.19714 1.20940 1.21343 1.18837 0.92455 0.83929 1.43775 0.92446 1.43152 1.49224 1.04673 1.27782 1.20219 0.90125 1.03661 0.80445 1.23054 0.94147 0.86281 0.96079 1.67801 1.15572 1.19446 1.15168 1.22746 0.93790 0.99589 0.90658 1.21887 1.03877 0.93107 1.02042 1.21446 0.96978 0.97017 0.95281 1.21984 1.02932 0.89035 0.96628 1.98403 1.96113 1.15316 1.90651 1.21104 0.91343 0.90968 0.93985 1.23069 1.06765 1.01849 0.91557 1.23289 1.00360 0.98457 1.04511 0.93182 0.85966 0.93351 0.83363 0.85239 0.85010 0.89191 0.88291 0.90815 0.91055 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.72 11.43 55.49 0.63 -23.09 16 2 C 0.04 1.08 3.23 -17.43 -0.06 1.02 16 3 Si 0.88 21.05 28.03 -169.99 -4.76 16.28 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.26 -6.81 7.35 -15.06 -0.11 -6.92 16 8 H 0.06 1.57 7.37 -52.48 -0.39 1.18 16 9 N -0.53 -13.07 2.74 -167.02 -0.46 -13.53 16 10 C 0.18 4.28 5.23 -5.19 -0.03 4.26 16 11 C 0.15 3.10 6.37 -82.55 -0.53 2.57 16 12 N -0.47 -9.21 10.27 -9.45 -0.10 -9.31 16 13 C 0.09 1.42 11.18 -17.55 -0.20 1.22 16 14 C -0.19 -2.72 10.11 -39.45 -0.40 -3.12 16 15 C -0.08 -1.32 9.98 -39.24 -0.39 -1.71 16 16 C -0.08 -1.52 6.34 -39.36 -0.25 -1.77 16 17 Cl -0.03 -0.72 23.12 -51.86 -1.20 -1.92 16 18 C 0.14 2.98 6.61 -67.93 -0.45 2.53 16 19 C -0.19 -3.97 9.83 -26.73 -0.26 -4.23 16 20 C -0.23 -4.56 10.11 -26.73 -0.27 -4.83 16 21 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 22 H 0.12 3.10 4.37 -51.93 -0.23 2.87 16 23 H 0.05 1.11 8.04 -51.93 -0.42 0.69 16 24 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 25 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 26 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 27 H 0.09 1.89 8.10 -51.93 -0.42 1.47 16 28 H 0.10 2.22 7.02 -51.93 -0.36 1.86 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.08 1.76 8.00 -51.93 -0.42 1.34 16 LS Contribution 274.90 15.07 4.14 4.14 Total: -1.00 -27.80 274.90 -8.16 -35.96 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -3.48 Total: 2.44 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.94 Total: -10.98 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.08 Total: -45.92 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.76 Total: 16.28 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.20 Total: -1.92 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.80 -8.16 -35.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528364363.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.591 kcal (2) G-P(sol) polarization free energy of solvation -27.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds