Wall clock time and date at job start Sun Mar 29 2020 22:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 120.00037 * 2 1 4 4 H 1.48495 * 109.46863 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46777 * 300.00013 * 3 2 1 6 6 H 1.48494 * 109.46957 * 60.00185 * 3 2 1 7 7 C 1.38810 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99726 * 196.31432 * 7 2 1 9 9 N 1.36930 * 120.00041 * 16.30694 * 7 2 1 10 10 C 1.46504 * 119.99894 * 41.42863 * 9 7 2 11 11 C 1.50704 * 109.46927 * 89.99630 * 10 9 7 12 12 N 1.31878 * 119.62532 * 90.00123 * 11 10 9 13 13 C 1.31856 * 121.73614 * 179.97438 * 12 11 10 14 14 C 1.38227 * 120.79373 * 0.02562 * 13 12 11 15 15 C 1.38603 * 119.17561 * 0.22987 * 14 13 12 16 16 C 1.38300 * 119.62720 * 269.97609 * 11 10 9 17 17 Cl 1.73602 * 120.43197 * 0.04979 * 16 11 10 18 18 C 1.46498 * 120.00299 * 221.42362 * 9 7 2 19 19 C 1.53006 * 117.49794 * 13.85290 * 18 9 7 20 20 C 1.53003 * 59.99957 * 252.50951 * 19 18 9 21 21 H 0.97004 * 120.00082 * 354.94843 * 1 2 3 22 22 H 1.08999 * 109.47096 * 329.99775 * 10 9 7 23 23 H 1.08995 * 109.46875 * 209.99591 * 10 9 7 24 24 H 1.07997 * 119.59876 * 179.97438 * 13 12 11 25 25 H 1.07997 * 120.40948 * 179.97438 * 14 13 12 26 26 H 1.08004 * 120.79674 * 179.74706 * 15 14 13 27 27 H 1.09004 * 115.55452 * 159.56145 * 18 9 7 28 28 H 1.09002 * 117.49851 * 0.02562 * 19 18 9 29 29 H 1.09001 * 117.49915 * 145.02111 * 19 18 9 30 30 H 1.09003 * 117.49554 * 252.50942 * 20 19 18 31 31 H 1.08996 * 117.51864 * 107.48280 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0576 -1.2211 0.2622 9 7 1.3668 -2.3640 -0.3340 10 6 0.4196 -2.3820 -1.4515 11 6 1.1517 -2.7177 -2.7252 12 7 1.2744 -3.9779 -3.0939 13 6 1.9059 -4.3186 -4.2001 14 6 2.4670 -3.3571 -5.0194 15 6 2.3636 -2.0217 -4.6630 16 6 1.6868 -1.7006 -3.4946 17 17 1.5209 -0.0444 -3.0012 18 6 1.6258 -3.5890 0.4265 19 6 2.3584 -3.4496 1.7625 20 6 3.0799 -4.0479 0.5531 21 1 -0.4850 0.8368 0.0740 22 1 -0.0470 -1.4016 -1.5481 23 1 -0.3481 -3.1329 -1.2649 24 1 1.9863 -5.3615 -4.4688 25 1 2.9832 -3.6431 -5.9239 26 1 2.7958 -1.2491 -5.2817 27 1 0.8595 -4.3605 0.3505 28 1 2.6473 -2.4463 2.0757 29 1 2.0740 -4.1293 2.5658 30 1 3.2702 -5.1211 0.5609 31 1 3.8438 -3.4385 0.0703 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528364363.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:27 Heat of formation + Delta-G solvation = 64.056837 kcal Electronic energy + Delta-G solvation = -16732.976960 eV Core-core repulsion = 14041.350250 eV Total energy + Delta-G solvation = -2691.626710 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.02936 -38.63467 -37.28800 -35.43446 -33.61407 -32.85015 -31.27999 -27.77084 -25.69743 -24.27399 -22.94884 -22.83779 -21.61348 -18.50994 -17.77920 -17.37051 -17.11899 -16.47756 -16.32068 -15.59221 -15.29047 -14.52812 -14.30069 -14.05451 -13.50552 -13.36847 -13.16616 -12.90925 -12.62203 -12.48256 -12.29975 -12.17877 -11.93196 -11.46906 -11.39326 -10.93449 -10.59643 -10.43394 -10.26260 -9.59883 -8.37143 -7.82614 -5.45544 0.15743 0.33400 1.19045 1.39159 1.47502 1.58631 2.44476 2.82990 3.23826 3.42646 3.61175 3.72836 3.90544 3.99362 4.20476 4.32035 4.51486 4.55213 4.57803 4.78644 4.88812 4.93533 5.06374 5.13483 5.25740 5.35725 5.55663 5.57610 5.73645 5.79768 6.52011 7.13702 7.18117 7.82356 8.38844 9.15681 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.012712 C = 0.008571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.248115 B = 2202.064081 C = 3265.899396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.017 3.983 3 Si 0.912 3.088 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.288 1.288 7 C -0.257 4.257 8 H 0.039 0.961 9 N -0.548 5.548 10 C 0.187 3.813 11 C 0.121 3.879 12 N -0.492 5.492 13 C 0.087 3.913 14 C -0.164 4.164 15 C -0.080 4.080 16 C -0.098 4.098 17 Cl -0.058 7.058 18 C 0.111 3.889 19 C -0.188 4.188 20 C -0.205 4.205 21 H 0.255 0.745 22 H 0.100 0.900 23 H 0.038 0.962 24 H 0.190 0.810 25 H 0.181 0.819 26 H 0.159 0.841 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.957 -6.111 -9.274 11.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.183 4.183 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.215 1.215 7 C -0.386 4.386 8 H 0.057 0.943 9 N -0.265 5.265 10 C 0.061 3.939 11 C -0.018 4.018 12 N -0.202 5.202 13 C -0.070 4.070 14 C -0.184 4.184 15 C -0.107 4.107 16 C -0.128 4.128 17 Cl -0.029 7.029 18 C 0.003 3.997 19 C -0.226 4.226 20 C -0.246 4.246 21 H 0.064 0.936 22 H 0.118 0.882 23 H 0.057 0.943 24 H 0.207 0.793 25 H 0.198 0.802 26 H 0.177 0.823 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.416 -6.433 -8.735 11.373 hybrid contribution 0.833 1.991 -0.223 2.170 sum 4.249 -4.442 -8.958 10.864 Atomic orbital electron populations 1.69884 1.06185 1.26073 1.52298 1.25408 0.95167 0.99464 0.98225 0.86029 0.79619 0.82716 0.77531 1.19788 1.20609 1.21544 1.18692 0.91600 0.84933 1.43420 0.94293 1.43240 1.49221 1.04932 1.29069 1.19929 0.90107 1.02094 0.81799 1.22514 0.95599 0.87574 0.96138 1.67721 1.16813 1.18496 1.17175 1.23502 0.92246 1.01991 0.89288 1.22433 1.01627 0.91543 1.02756 1.21855 0.95841 0.98981 0.94012 1.22132 1.04752 0.87600 0.98327 1.98383 1.96373 1.17066 1.91125 1.21311 0.92669 0.90718 0.95022 1.23055 1.06217 1.01327 0.92047 1.23192 0.98328 0.99638 1.03407 0.93558 0.88229 0.94318 0.79340 0.80198 0.82341 0.88331 0.90757 0.87882 0.88157 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.11 11.43 21.65 0.25 -49.86 16 2 C 0.02 0.91 3.23 84.86 0.27 1.18 16 3 Si 0.91 43.82 28.03 68.60 1.92 45.74 16 4 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 7 C -0.26 -13.73 7.35 84.03 0.62 -13.12 16 8 H 0.04 2.21 7.37 -2.91 -0.02 2.18 16 9 N -0.55 -27.39 2.74 -682.32 -1.87 -29.26 16 10 C 0.19 9.04 5.23 85.63 0.45 9.49 16 11 C 0.12 5.14 6.37 42.57 0.27 5.41 16 12 N -0.49 -18.43 10.27 -183.80 -1.89 -20.32 16 13 C 0.09 2.41 11.18 84.69 0.95 3.36 16 14 C -0.16 -3.91 10.11 22.35 0.23 -3.68 16 15 C -0.08 -2.39 9.98 22.49 0.22 -2.17 16 16 C -0.10 -3.87 6.34 22.42 0.14 -3.73 16 17 Cl -0.06 -2.50 23.12 -2.72 -0.06 -2.56 16 18 C 0.11 4.88 6.61 44.99 0.30 5.18 16 19 C -0.19 -7.57 9.83 30.60 0.30 -7.27 16 20 C -0.21 -8.05 10.11 30.60 0.31 -7.74 16 21 H 0.25 13.79 8.32 -92.71 -0.77 13.01 16 22 H 0.10 5.26 4.37 -2.39 -0.01 5.25 16 23 H 0.04 1.85 8.04 -2.39 -0.02 1.83 16 24 H 0.19 3.58 8.06 -2.91 -0.02 3.56 16 25 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 26 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 27 H 0.10 4.10 8.10 -2.39 -0.02 4.08 16 28 H 0.07 3.37 7.02 -2.39 -0.02 3.36 16 29 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 30 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 31 H 0.06 2.59 8.00 -2.39 -0.02 2.57 16 Total: -1.00 -61.83 274.90 3.54 -58.29 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 1.13 Total: 11.06 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 4.06 Total: -13.09 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -3.51 Total: -99.44 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.92 Total: 45.74 kcal Atomic # 17 Polarization: -2.50 SS G_CDS: -0.06 Total: -2.56 kcal Total: -61.83 3.54 -58.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528364363.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.350 kcal (2) G-P(sol) polarization free energy of solvation -61.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds