Wall clock time and date at job start Sun Mar 29 2020 22:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00070 * 2 1 4 4 H 1.48499 * 109.46938 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47097 * 300.00659 * 3 2 1 6 6 H 1.48498 * 109.46604 * 60.00369 * 3 2 1 7 7 C 1.38816 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99335 * 200.56118 * 7 2 1 9 9 N 1.36932 * 120.00247 * 20.55601 * 7 2 1 10 10 C 1.46507 * 120.00066 * 38.06579 * 9 7 2 11 11 C 1.50703 * 109.47077 * 89.99798 * 10 9 7 12 12 C 1.38225 * 119.60708 * 95.00118 * 11 10 9 13 13 C 1.38600 * 119.17953 * 179.97438 * 12 11 10 14 14 C 1.38783 * 118.41054 * 0.24998 * 13 12 11 15 15 Cl 1.73598 * 120.43328 * 179.73014 * 14 13 12 16 16 C 1.38306 * 119.13489 * 359.50213 * 14 13 12 17 17 N 1.31850 * 119.60154 * 274.98242 * 11 10 9 18 18 C 1.46498 * 120.00279 * 218.05979 * 9 7 2 19 19 C 1.53008 * 117.49494 * 13.98606 * 18 9 7 20 20 C 1.53002 * 117.50313 * 305.32840 * 18 9 7 21 21 H 0.96999 * 119.99844 * 354.95538 * 1 2 3 22 22 H 1.08998 * 109.46674 * 330.00251 * 10 9 7 23 23 H 1.08999 * 109.47027 * 209.99894 * 10 9 7 24 24 H 1.08003 * 120.40713 * 359.95473 * 12 11 10 25 25 H 1.08009 * 120.79539 * 179.97438 * 13 12 11 26 26 H 1.07994 * 119.62983 * 180.22383 * 16 14 13 27 27 H 1.08997 * 115.54937 * 159.64864 * 18 9 7 28 28 H 1.08994 * 117.50097 * 359.97438 * 19 18 9 29 29 H 1.09004 * 117.49677 * 145.01838 * 19 18 9 30 30 H 1.08999 * 117.49920 * 214.98047 * 20 18 9 31 31 H 1.09006 * 117.49551 * 359.96873 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0387 -1.2321 0.3280 9 7 1.3910 -2.3501 -0.4174 10 6 0.4600 -2.3112 -1.5480 11 6 1.2155 -2.5529 -2.8294 12 6 1.2828 -3.8309 -3.3518 13 6 1.9795 -4.0431 -4.5310 14 6 2.5905 -2.9569 -5.1416 15 17 3.4825 -3.1641 -6.6164 16 6 2.4755 -1.7062 -4.5623 17 7 1.8042 -1.5428 -3.4389 18 6 1.6594 -3.6173 0.2670 19 6 2.3678 -3.5523 1.6216 20 6 3.1191 -4.0595 0.3881 21 1 -0.4850 0.8368 0.0739 22 1 -0.0212 -1.3340 -1.5888 23 1 -0.2977 -3.0844 -1.4215 24 1 0.7986 -4.6539 -2.8471 25 1 2.0490 -5.0310 -4.9621 26 1 2.9447 -0.8548 -5.0325 27 1 0.9078 -4.3946 0.1289 28 1 2.6345 -2.5668 2.0033 29 1 2.0826 -4.2871 2.3745 30 1 3.3278 -5.1278 0.3299 31 1 3.8797 -3.4078 -0.0419 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554316659.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:34 Heat of formation + Delta-G solvation = 76.442960 kcal Electronic energy + Delta-G solvation = -16248.915018 eV Core-core repulsion = 13557.825410 eV Total energy + Delta-G solvation = -2691.089608 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.71656 -37.05614 -36.35410 -33.69205 -31.97027 -31.63074 -29.69090 -26.01248 -23.89647 -23.22960 -21.43177 -21.36807 -19.88542 -16.90363 -16.29087 -16.18380 -15.50618 -14.95312 -14.47502 -13.87417 -13.82312 -13.29235 -12.88678 -12.72702 -11.99551 -11.83191 -11.55290 -11.16292 -11.02031 -10.82478 -10.69726 -10.63013 -10.35299 -10.01684 -9.70710 -9.44823 -9.36984 -8.88628 -8.48572 -8.33156 -6.57592 -5.89071 -3.43629 1.40098 1.62380 2.29187 3.36594 3.45788 3.48124 4.14504 4.45288 4.87265 4.92092 5.04239 5.16218 5.27539 5.37002 5.45119 5.83267 5.87570 5.98509 6.06239 6.17152 6.20028 6.43383 6.45194 6.54006 6.63264 6.92726 7.04845 7.13920 7.47292 7.78559 8.41068 8.61415 9.06335 9.70012 10.23400 11.13395 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.019968 B = 0.007690 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.933978 B = 3640.082731 C = 4420.987865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.028 3.972 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.290 1.290 7 C -0.258 4.258 8 H 0.060 0.940 9 N -0.535 5.535 10 C 0.182 3.818 11 C 0.145 3.855 12 C -0.164 4.164 13 C -0.072 4.072 14 C -0.114 4.114 15 Cl -0.082 7.082 16 C 0.113 3.887 17 N -0.444 5.444 18 C 0.125 3.875 19 C -0.191 4.191 20 C -0.228 4.228 21 H 0.258 0.742 22 H 0.118 0.882 23 H 0.049 0.951 24 H 0.134 0.866 25 H 0.133 0.867 26 H 0.153 0.847 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.287 -7.586 -7.481 10.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.173 4.173 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.217 1.217 7 C -0.387 4.387 8 H 0.078 0.922 9 N -0.250 5.250 10 C 0.056 3.944 11 C 0.005 3.995 12 C -0.185 4.185 13 C -0.099 4.099 14 C -0.143 4.143 15 Cl -0.053 7.053 16 C -0.047 4.047 17 N -0.153 5.153 18 C 0.016 3.984 19 C -0.230 4.230 20 C -0.269 4.269 21 H 0.068 0.932 22 H 0.135 0.865 23 H 0.067 0.933 24 H 0.152 0.848 25 H 0.151 0.849 26 H 0.170 0.830 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.127 -6.581 -7.257 10.025 hybrid contribution 0.895 -0.134 -0.592 1.081 sum 3.021 -6.714 -7.849 10.762 Atomic orbital electron populations 1.69859 1.05746 1.26345 1.50440 1.25138 0.95006 0.98751 0.98406 0.86242 0.79774 0.83523 0.77273 1.20129 1.20986 1.21730 1.18864 0.94179 0.84723 1.40942 0.92196 1.43253 1.50798 1.02808 1.28114 1.20118 0.89810 1.04578 0.79929 1.23176 0.92995 0.87779 0.95591 1.22043 1.01399 0.99004 0.96069 1.21363 0.95431 0.97928 0.95136 1.21984 1.03401 0.96999 0.91945 1.98328 1.74494 1.97661 1.34846 1.22859 0.95356 0.94451 0.91984 1.67911 1.06811 1.34597 1.05992 1.21155 0.91519 0.90358 0.95386 1.23076 1.06363 1.02187 0.91360 1.23368 0.99848 0.98968 1.04669 0.93160 0.86506 0.93287 0.84793 0.84914 0.83005 0.89249 0.88178 0.90662 0.90919 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.45 11.45 55.49 0.64 -23.81 16 2 C 0.03 0.77 4.97 -17.43 -0.09 0.68 16 3 Si 0.90 21.76 29.61 -169.99 -5.03 16.73 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.26 -6.81 8.04 -15.06 -0.12 -6.93 16 8 H 0.06 1.64 7.23 -52.49 -0.38 1.26 16 9 N -0.54 -12.71 2.76 -167.01 -0.46 -13.17 16 10 C 0.18 4.07 5.64 -5.19 -0.03 4.04 16 11 C 0.14 2.93 6.36 -82.59 -0.53 2.40 16 12 C -0.16 -2.71 9.72 -39.45 -0.38 -3.09 16 13 C -0.07 -1.08 9.98 -39.25 -0.39 -1.47 16 14 C -0.11 -1.78 6.34 -39.35 -0.25 -2.03 16 15 Cl -0.08 -1.09 28.99 -51.86 -1.50 -2.59 16 16 C 0.11 1.99 10.99 -17.50 -0.19 1.80 16 17 N -0.44 -9.41 10.27 -9.45 -0.10 -9.51 16 18 C 0.12 2.56 6.61 -67.93 -0.45 2.11 16 19 C -0.19 -3.73 9.81 -26.69 -0.26 -3.99 16 20 C -0.23 -4.31 10.09 -26.69 -0.27 -4.58 16 21 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 22 H 0.12 3.01 5.52 -51.93 -0.29 2.73 16 23 H 0.05 0.98 7.94 -51.93 -0.41 0.57 16 24 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 25 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 26 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 27 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 28 H 0.10 2.18 6.95 -51.93 -0.36 1.82 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.74 8.01 -51.93 -0.42 1.33 16 LS Contribution 285.48 15.07 4.30 4.30 Total: -1.00 -28.10 285.48 -8.64 -36.74 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -3.52 Total: 2.36 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.96 Total: -11.05 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.08 Total: -46.49 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.50 Total: -2.59 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.10 -8.64 -36.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554316659.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.184 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds