Wall clock time and date at job start Sun Mar 29 2020 22:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00070 * 2 1 4 4 H 1.48499 * 109.46938 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47097 * 300.00659 * 3 2 1 6 6 H 1.48498 * 109.46604 * 60.00369 * 3 2 1 7 7 C 1.38816 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99335 * 200.56118 * 7 2 1 9 9 N 1.36932 * 120.00247 * 20.55601 * 7 2 1 10 10 C 1.46507 * 120.00066 * 38.06579 * 9 7 2 11 11 C 1.50703 * 109.47077 * 89.99798 * 10 9 7 12 12 C 1.38225 * 119.60708 * 95.00118 * 11 10 9 13 13 C 1.38600 * 119.17953 * 179.97438 * 12 11 10 14 14 C 1.38783 * 118.41054 * 0.24998 * 13 12 11 15 15 Cl 1.73598 * 120.43328 * 179.73014 * 14 13 12 16 16 C 1.38306 * 119.13489 * 359.50213 * 14 13 12 17 17 N 1.31850 * 119.60154 * 274.98242 * 11 10 9 18 18 C 1.46498 * 120.00279 * 218.05979 * 9 7 2 19 19 C 1.53008 * 117.49494 * 13.98606 * 18 9 7 20 20 C 1.53002 * 117.50313 * 305.32840 * 18 9 7 21 21 H 0.96999 * 119.99844 * 354.95538 * 1 2 3 22 22 H 1.08998 * 109.46674 * 330.00251 * 10 9 7 23 23 H 1.08999 * 109.47027 * 209.99894 * 10 9 7 24 24 H 1.08003 * 120.40713 * 359.95473 * 12 11 10 25 25 H 1.08009 * 120.79539 * 179.97438 * 13 12 11 26 26 H 1.07994 * 119.62983 * 180.22383 * 16 14 13 27 27 H 1.08997 * 115.54937 * 159.64864 * 18 9 7 28 28 H 1.08994 * 117.50097 * 359.97438 * 19 18 9 29 29 H 1.09004 * 117.49677 * 145.01838 * 19 18 9 30 30 H 1.08999 * 117.49920 * 214.98047 * 20 18 9 31 31 H 1.09006 * 117.49551 * 359.96873 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0387 -1.2321 0.3280 9 7 1.3910 -2.3501 -0.4174 10 6 0.4600 -2.3112 -1.5480 11 6 1.2155 -2.5529 -2.8294 12 6 1.2828 -3.8309 -3.3518 13 6 1.9795 -4.0431 -4.5310 14 6 2.5905 -2.9569 -5.1416 15 17 3.4825 -3.1641 -6.6164 16 6 2.4755 -1.7062 -4.5623 17 7 1.8042 -1.5428 -3.4389 18 6 1.6594 -3.6173 0.2670 19 6 2.3678 -3.5523 1.6216 20 6 3.1191 -4.0595 0.3881 21 1 -0.4850 0.8368 0.0739 22 1 -0.0212 -1.3340 -1.5888 23 1 -0.2977 -3.0844 -1.4215 24 1 0.7986 -4.6539 -2.8471 25 1 2.0490 -5.0310 -4.9621 26 1 2.9447 -0.8548 -5.0325 27 1 0.9078 -4.3946 0.1289 28 1 2.6345 -2.5668 2.0033 29 1 2.0826 -4.2871 2.3745 30 1 3.3278 -5.1278 0.3299 31 1 3.8797 -3.4078 -0.0419 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554316659.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:34 Heat of formation + Delta-G solvation = 61.274791 kcal Electronic energy + Delta-G solvation = -16249.572759 eV Core-core repulsion = 13557.825410 eV Total energy + Delta-G solvation = -2691.747349 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.09528 -38.67894 -37.55451 -35.40126 -33.36550 -33.29275 -31.32569 -27.74948 -25.64069 -24.55416 -22.94611 -22.83029 -21.61921 -18.52832 -17.76747 -17.65719 -17.09522 -16.40904 -16.29664 -15.63788 -15.26286 -14.61995 -14.47248 -14.05252 -13.62509 -13.30550 -13.10018 -12.79198 -12.72521 -12.49473 -12.36903 -12.17673 -12.03615 -11.86051 -11.43022 -10.93219 -10.73339 -10.44891 -10.25725 -9.68604 -8.44594 -7.85883 -5.44689 0.06164 0.34872 1.07235 1.40218 1.46408 1.52642 2.45838 2.78498 3.19772 3.43238 3.58197 3.62541 3.85845 3.94135 4.13218 4.32039 4.47166 4.50904 4.60756 4.72138 4.83269 4.95682 5.03659 5.09340 5.16259 5.35819 5.56579 5.60089 5.68712 5.75470 6.46840 7.13858 7.21074 7.83089 8.31189 9.11344 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.019968 B = 0.007690 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.933978 B = 3640.082731 C = 4420.987865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.014 4.014 3 Si 0.946 3.054 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.252 4.252 8 H 0.042 0.958 9 N -0.552 5.552 10 C 0.185 3.815 11 C 0.121 3.879 12 C -0.154 4.154 13 C -0.062 4.062 14 C -0.105 4.105 15 Cl -0.055 7.055 16 C 0.096 3.904 17 N -0.491 5.491 18 C 0.106 3.894 19 C -0.193 4.193 20 C -0.208 4.208 21 H 0.254 0.746 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.162 0.838 25 H 0.172 0.828 26 H 0.163 0.837 27 H 0.118 0.882 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.937 -10.146 -8.663 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.212 4.212 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.382 4.382 8 H 0.059 0.941 9 N -0.268 5.268 10 C 0.059 3.941 11 C -0.019 4.019 12 C -0.175 4.175 13 C -0.088 4.088 14 C -0.135 4.135 15 Cl -0.027 7.027 16 C -0.063 4.063 17 N -0.201 5.201 18 C -0.002 4.002 19 C -0.232 4.232 20 C -0.248 4.248 21 H 0.063 0.937 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.180 0.820 25 H 0.190 0.810 26 H 0.181 0.819 27 H 0.136 0.864 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.796 -9.159 -8.453 12.774 hybrid contribution 0.762 0.562 -0.370 1.017 sum 3.558 -8.597 -8.824 12.823 Atomic orbital electron populations 1.69952 1.06461 1.26267 1.52524 1.25596 0.95562 1.00715 0.99349 0.85555 0.78741 0.81274 0.76885 1.20253 1.21721 1.21280 1.18789 0.93354 0.86130 1.39967 0.94071 1.43365 1.50763 1.03155 1.29560 1.19899 0.90139 1.03053 0.81012 1.22823 0.93994 0.89352 0.95684 1.22215 1.00908 0.97973 0.96404 1.21767 0.93699 0.99280 0.94079 1.22056 1.02455 0.96494 0.92464 1.98343 1.73763 1.97510 1.33040 1.23042 0.95647 0.96077 0.91522 1.67740 1.08279 1.36251 1.07781 1.21477 0.93095 0.89827 0.95768 1.23076 1.06483 1.01574 0.92021 1.23281 0.97917 1.00306 1.03326 0.93657 0.90482 0.91420 0.81996 0.81042 0.81946 0.86407 0.91352 0.87539 0.87366 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.16 11.45 21.65 0.25 -51.91 16 2 C -0.01 -0.77 4.97 84.86 0.42 -0.35 16 3 Si 0.95 46.20 29.61 68.60 2.03 48.23 16 4 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 6 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 7 C -0.25 -13.70 8.04 84.04 0.68 -13.02 16 8 H 0.04 2.35 7.23 -2.91 -0.02 2.33 16 9 N -0.55 -26.39 2.76 -682.31 -1.89 -28.28 16 10 C 0.19 8.35 5.64 85.63 0.48 8.83 16 11 C 0.12 4.82 6.36 42.55 0.27 5.09 16 12 C -0.15 -4.65 9.72 22.35 0.22 -4.44 16 13 C -0.06 -1.61 9.98 22.49 0.22 -1.39 16 14 C -0.11 -3.01 6.34 22.42 0.14 -2.87 16 15 Cl -0.06 -1.30 28.99 -2.72 -0.08 -1.37 16 16 C 0.10 3.31 10.99 84.70 0.93 4.24 16 17 N -0.49 -20.96 10.27 -183.80 -1.89 -22.85 16 18 C 0.11 4.19 6.61 45.00 0.30 4.49 16 19 C -0.19 -7.28 9.81 30.62 0.30 -6.97 16 20 C -0.21 -7.45 10.09 30.62 0.31 -7.14 16 21 H 0.25 14.15 8.32 -92.71 -0.77 13.38 16 22 H 0.08 4.13 5.52 -2.39 -0.01 4.12 16 23 H 0.07 2.66 7.94 -2.39 -0.02 2.64 16 24 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 25 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 26 H 0.16 4.99 8.06 -2.91 -0.02 4.97 16 27 H 0.12 3.93 8.10 -2.39 -0.02 3.91 16 28 H 0.07 3.02 6.95 -2.39 -0.02 3.00 16 29 H 0.11 3.31 8.14 -2.38 -0.02 3.29 16 30 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.06 2.31 8.01 -2.38 -0.02 2.29 16 Total: -1.00 -62.77 285.48 3.83 -58.94 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 1.13 Total: 10.77 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 4.27 Total: -13.53 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -3.53 Total: -103.04 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.37 kcal Total: -62.77 3.83 -58.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554316659.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.217 kcal (2) G-P(sol) polarization free energy of solvation -62.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds