Wall clock time and date at job start Sun Mar 29 2020 23:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 120.00149 * 2 1 4 4 C 1.50708 * 109.47228 * 270.00023 * 3 2 1 5 5 H 1.07997 * 119.99933 * 359.97438 * 4 3 2 6 6 C 1.37869 * 119.99782 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99676 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 120.00417 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.47285 * 89.99943 * 8 6 4 10 10 H 1.48502 * 109.47094 * 209.99943 * 8 6 4 11 11 H 1.48501 * 109.47328 * 329.99862 * 8 6 4 12 12 C 1.34778 * 119.99958 * 180.02562 * 2 1 3 13 13 O 1.21517 * 120.00342 * 182.06870 * 12 2 1 14 14 C 1.48174 * 119.99580 * 2.07331 * 12 2 1 15 15 C 1.38970 * 119.66272 * 172.79624 * 14 12 2 16 16 C 1.39377 * 119.10990 * 180.02562 * 15 14 12 17 17 O 1.35757 * 120.78427 * 179.97438 * 16 15 14 18 18 C 1.38957 * 118.44072 * 359.97438 * 16 15 14 19 19 C 1.38990 * 119.24513 * 0.24893 * 18 16 15 20 20 O 1.35677 * 119.58414 * 179.72744 * 19 18 16 21 21 N 1.32018 * 120.83505 * 359.48063 * 19 18 16 22 22 H 1.08997 * 109.47209 * 263.77270 * 1 2 3 23 23 H 1.09008 * 109.47064 * 23.76861 * 1 2 3 24 24 H 1.08994 * 109.47469 * 143.77126 * 1 2 3 25 25 H 1.08992 * 109.47114 * 30.00408 * 3 2 1 26 26 H 1.09007 * 109.47028 * 150.00449 * 3 2 1 27 27 H 0.97004 * 119.99624 * 180.02562 * 7 6 4 28 28 H 1.08003 * 120.44627 * 359.97438 * 15 14 12 29 29 H 0.96692 * 113.99989 * 270.02606 * 17 16 15 30 30 H 1.08000 * 120.37753 * 179.97438 * 18 16 15 31 31 H 0.96698 * 113.99830 * 89.99508 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8779 -1.6727 7 7 3.3448 3.2578 -2.9127 8 14 3.7330 3.9291 -0.2529 9 1 5.1066 3.5081 0.1229 10 1 3.7478 5.3559 -0.6645 11 1 2.8271 3.7592 0.9114 12 6 2.1388 -1.1672 -0.0005 13 8 3.3534 -1.1677 0.0375 14 6 1.3986 -2.4499 -0.0475 15 6 2.0969 -3.6418 -0.1993 16 6 1.3890 -4.8417 -0.2426 17 8 2.0367 -6.0256 -0.3903 18 6 0.0046 -4.7976 -0.1310 19 6 -0.6262 -3.5676 0.0138 20 8 -1.9780 -3.5162 0.1178 21 7 0.0737 -2.4490 0.0564 22 1 -0.3633 -0.1115 1.0216 23 1 -0.3633 0.9406 -0.4142 24 1 -0.3634 -0.8289 -0.6073 25 1 1.6085 2.0283 0.5139 26 1 3.1500 1.1383 0.5138 27 1 3.8216 4.0838 -3.0899 28 1 3.1736 -3.6384 -0.2834 29 1 2.1562 -6.2963 -1.3108 30 1 -0.5750 -5.7084 -0.1610 31 1 -2.3050 -3.5715 1.0261 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596909721.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:15 Heat of formation + Delta-G solvation = -52.837759 kcal Electronic energy + Delta-G solvation = -18209.790417 eV Core-core repulsion = 15072.385612 eV Total energy + Delta-G solvation = -3137.404805 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.96591 -38.87600 -38.21265 -36.49090 -35.04591 -32.58098 -31.44742 -30.55926 -28.43619 -26.07875 -24.53839 -23.36427 -22.23414 -20.09423 -18.50393 -17.89170 -17.35977 -16.94280 -16.29942 -16.03696 -15.45569 -15.23267 -14.88712 -14.54510 -14.04974 -13.31138 -13.04350 -12.76646 -12.34792 -12.30391 -12.12643 -11.78339 -11.46256 -11.20198 -10.93310 -10.52283 -10.16719 -9.89681 -9.71783 -9.47966 -9.15520 -8.92219 -8.58530 -7.68567 -6.08370 -4.07680 0.53307 0.82261 2.87320 3.20820 3.30612 3.36510 3.38083 3.59266 3.82656 3.97206 4.40136 4.54798 4.75732 4.81245 5.19894 5.24483 5.27470 5.53684 5.85519 6.04845 6.08776 6.19286 6.61686 6.71743 6.91538 7.16843 7.26929 7.30274 7.58462 7.61443 8.17818 8.45071 8.80392 8.95476 9.51135 11.04930 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.033304 B = 0.005570 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.538920 B = 5025.445164 C = 5458.188284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.569 5.569 3 C 0.212 3.788 4 C -0.530 4.530 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.555 3.445 13 O -0.532 6.532 14 C 0.137 3.863 15 C -0.151 4.151 16 C 0.161 3.839 17 O -0.489 6.489 18 C -0.204 4.204 19 C 0.318 3.682 20 O -0.478 6.478 21 N -0.472 5.472 22 H 0.045 0.955 23 H 0.063 0.937 24 H 0.098 0.902 25 H 0.035 0.965 26 H 0.039 0.961 27 H 0.265 0.735 28 H 0.159 0.841 29 H 0.401 0.599 30 H 0.147 0.853 31 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.901 -16.146 7.068 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.298 5.298 3 C 0.091 3.909 4 C -0.569 4.569 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.339 3.661 13 O -0.409 6.409 14 C -0.001 4.001 15 C -0.172 4.172 16 C 0.109 3.891 17 O -0.300 6.300 18 C -0.226 4.226 19 C 0.138 3.862 20 O -0.285 6.285 21 N -0.195 5.195 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.115 0.885 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.176 0.824 29 H 0.259 0.741 30 H 0.165 0.835 31 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -8.613 -15.131 7.085 18.797 hybrid contribution 0.524 -0.241 0.392 0.697 sum -8.089 -15.373 7.477 18.912 Atomic orbital electron populations 1.22229 0.79242 1.03392 1.01347 1.47769 1.07511 1.06328 1.68173 1.19808 0.92612 0.79791 0.98646 1.21307 1.37138 1.07333 0.91086 0.90681 1.24849 0.95180 0.97272 0.95645 1.69901 1.41388 1.23555 1.18669 0.86837 0.80140 0.79755 0.82904 1.19828 1.21016 1.18996 1.17680 0.86602 0.82645 0.79168 1.90772 1.12578 1.86363 1.51186 1.21217 0.87916 0.94838 0.96143 1.22478 1.03419 0.90792 1.00530 1.18423 0.89309 0.85275 0.96137 1.84753 1.77877 1.34756 1.32612 1.22504 0.94479 0.99416 1.06174 1.19056 0.84525 0.87259 0.95378 1.84800 1.14862 1.95581 1.33227 1.67877 1.07708 1.29800 1.14121 0.93663 0.91786 0.88451 0.94736 0.94273 0.92520 0.82374 0.74104 0.83499 0.74027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.46 9.30 59.84 0.56 2.02 16 2 N -0.57 -12.57 2.86 -183.95 -0.53 -13.09 16 3 C 0.21 5.32 4.22 -5.19 -0.02 5.30 16 4 C -0.53 -15.51 9.94 -34.44 -0.34 -15.85 16 5 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 6 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 7 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 8 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 12 C 0.55 12.02 7.66 -12.18 -0.09 11.93 16 13 O -0.53 -13.14 15.90 5.35 0.09 -13.05 16 14 C 0.14 2.34 6.62 -83.06 -0.55 1.80 16 15 C -0.15 -2.19 9.59 -38.89 -0.37 -2.56 16 16 C 0.16 1.85 6.77 -38.89 -0.26 1.59 16 17 O -0.49 -4.52 13.54 -18.98 -0.26 -4.77 16 18 C -0.20 -2.14 10.00 -39.04 -0.39 -2.53 16 19 C 0.32 3.87 7.74 -17.19 -0.13 3.73 16 20 O -0.48 -4.69 13.56 -18.73 -0.25 -4.95 16 21 N -0.47 -7.17 6.06 -9.95 -0.06 -7.23 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 1.16 8.03 -51.92 -0.42 0.74 16 24 H 0.10 1.71 5.26 -52.12 -0.27 1.43 16 25 H 0.03 0.82 7.13 -51.93 -0.37 0.45 16 26 H 0.04 1.03 6.82 -51.93 -0.35 0.67 16 27 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.16 2.32 7.65 -52.48 -0.40 1.92 16 29 H 0.40 1.72 9.06 45.56 0.41 2.13 16 30 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.40 1.87 9.06 45.56 0.41 2.28 16 LS Contribution 276.96 15.07 4.17 4.17 Total: -1.00 -36.32 276.96 -3.87 -40.19 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -1.43 Total: 1.33 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -1.71 Total: 7.47 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.19 Total: -47.39 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.43 Total: -22.77 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -36.32 -3.87 -40.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596909721.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.650 kcal (2) G-P(sol) polarization free energy of solvation -36.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds