Wall clock time and date at job start Sun Mar 29 2020 23:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 120.00149 * 2 1 4 4 C 1.50708 * 109.47228 * 270.00023 * 3 2 1 5 5 H 1.07997 * 119.99933 * 359.97438 * 4 3 2 6 6 C 1.37869 * 119.99782 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99676 * 180.02562 * 6 4 3 8 8 Si 1.86796 * 120.00417 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.47285 * 89.99943 * 8 6 4 10 10 H 1.48502 * 109.47094 * 209.99943 * 8 6 4 11 11 H 1.48501 * 109.47328 * 329.99862 * 8 6 4 12 12 C 1.34778 * 119.99958 * 180.02562 * 2 1 3 13 13 O 1.21517 * 120.00342 * 182.06870 * 12 2 1 14 14 C 1.48174 * 119.99580 * 2.07331 * 12 2 1 15 15 C 1.38970 * 119.66272 * 172.79624 * 14 12 2 16 16 C 1.39377 * 119.10990 * 180.02562 * 15 14 12 17 17 O 1.35757 * 120.78427 * 179.97438 * 16 15 14 18 18 C 1.38957 * 118.44072 * 359.97438 * 16 15 14 19 19 C 1.38990 * 119.24513 * 0.24893 * 18 16 15 20 20 O 1.35677 * 119.58414 * 179.72744 * 19 18 16 21 21 N 1.32018 * 120.83505 * 359.48063 * 19 18 16 22 22 H 1.08997 * 109.47209 * 263.77270 * 1 2 3 23 23 H 1.09008 * 109.47064 * 23.76861 * 1 2 3 24 24 H 1.08994 * 109.47469 * 143.77126 * 1 2 3 25 25 H 1.08992 * 109.47114 * 30.00408 * 3 2 1 26 26 H 1.09007 * 109.47028 * 150.00449 * 3 2 1 27 27 H 0.97004 * 119.99624 * 180.02562 * 7 6 4 28 28 H 1.08003 * 120.44627 * 359.97438 * 15 14 12 29 29 H 0.96692 * 113.99989 * 270.02606 * 17 16 15 30 30 H 1.08000 * 120.37753 * 179.97438 * 18 16 15 31 31 H 0.96698 * 113.99830 * 89.99508 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8779 -1.6727 7 7 3.3448 3.2578 -2.9127 8 14 3.7330 3.9291 -0.2529 9 1 5.1066 3.5081 0.1229 10 1 3.7478 5.3559 -0.6645 11 1 2.8271 3.7592 0.9114 12 6 2.1388 -1.1672 -0.0005 13 8 3.3534 -1.1677 0.0375 14 6 1.3986 -2.4499 -0.0475 15 6 2.0969 -3.6418 -0.1993 16 6 1.3890 -4.8417 -0.2426 17 8 2.0367 -6.0256 -0.3903 18 6 0.0046 -4.7976 -0.1310 19 6 -0.6262 -3.5676 0.0138 20 8 -1.9780 -3.5162 0.1178 21 7 0.0737 -2.4490 0.0564 22 1 -0.3633 -0.1115 1.0216 23 1 -0.3633 0.9406 -0.4142 24 1 -0.3634 -0.8289 -0.6073 25 1 1.6085 2.0283 0.5139 26 1 3.1500 1.1383 0.5138 27 1 3.8216 4.0838 -3.0899 28 1 3.1736 -3.6384 -0.2834 29 1 2.1562 -6.2963 -1.3108 30 1 -0.5750 -5.7084 -0.1610 31 1 -2.3050 -3.5715 1.0261 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596909721.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:15 Heat of formation + Delta-G solvation = -85.374250 kcal Electronic energy + Delta-G solvation = -18211.201305 eV Core-core repulsion = 15072.385612 eV Total energy + Delta-G solvation = -3138.815693 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.06616 -40.37293 -39.01385 -37.46290 -36.81180 -34.72343 -32.53861 -31.67606 -30.34247 -27.58627 -26.07252 -24.33004 -23.92045 -21.37114 -19.68370 -19.17202 -18.96103 -18.36812 -17.44854 -17.20198 -16.94619 -16.67038 -16.05870 -15.98227 -15.64954 -14.91820 -14.41606 -14.07737 -13.95144 -13.84921 -13.66040 -13.24247 -12.95999 -12.66399 -12.43856 -12.07171 -12.00572 -11.77010 -11.36600 -10.84406 -10.73323 -10.24739 -10.15462 -9.43993 -8.35518 -6.42029 -0.55513 -0.11737 1.33693 1.37767 1.46749 1.60578 1.99966 2.30907 2.39698 2.62736 2.92130 2.98404 3.32911 3.78241 3.81606 4.22027 4.33978 4.52625 4.54750 4.68385 4.81574 4.89198 4.92293 5.12919 5.30359 5.41149 5.58091 6.18379 6.41063 6.54638 6.58653 6.61134 6.73484 7.10423 7.25400 8.81538 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.033304 B = 0.005570 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.538920 B = 5025.445164 C = 5458.188284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.582 5.582 3 C 0.220 3.780 4 C -0.541 4.541 5 H 0.026 0.974 6 C 0.013 3.987 7 N -0.944 5.944 8 Si 0.951 3.049 9 H -0.272 1.272 10 H -0.273 1.273 11 H -0.238 1.238 12 C 0.546 3.454 13 O -0.578 6.578 14 C 0.113 3.887 15 C -0.159 4.159 16 C 0.178 3.822 17 O -0.488 6.488 18 C -0.178 4.178 19 C 0.323 3.677 20 O -0.478 6.478 21 N -0.489 5.489 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.104 0.896 25 H 0.055 0.945 26 H 0.027 0.973 27 H 0.270 0.730 28 H 0.146 0.854 29 H 0.425 0.575 30 H 0.185 0.815 31 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.548 -17.752 8.795 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.310 5.310 3 C 0.098 3.902 4 C -0.580 4.580 5 H 0.045 0.955 6 C -0.185 4.185 7 N -0.584 5.584 8 Si 0.773 3.227 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.161 1.161 12 C 0.333 3.667 13 O -0.458 6.458 14 C -0.024 4.024 15 C -0.181 4.181 16 C 0.125 3.875 17 O -0.303 6.303 18 C -0.200 4.200 19 C 0.142 3.858 20 O -0.289 6.289 21 N -0.214 5.214 22 H 0.090 0.910 23 H 0.076 0.924 24 H 0.122 0.878 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.079 0.921 28 H 0.164 0.836 29 H 0.287 0.713 30 H 0.203 0.797 31 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -10.315 -16.772 8.816 21.574 hybrid contribution 0.926 0.045 -0.233 0.956 sum -9.389 -16.727 8.583 21.015 Atomic orbital electron populations 1.22375 0.76879 1.03318 1.03087 1.47873 1.09016 1.05633 1.68483 1.19518 0.92989 0.81898 0.95813 1.21497 1.37320 1.07112 0.92052 0.95548 1.25867 0.95056 0.98757 0.98855 1.70052 1.42467 1.24497 1.21358 0.85672 0.79694 0.77716 0.79633 1.19781 1.19787 1.16121 1.18403 0.86505 0.84099 0.77685 1.90715 1.14639 1.87402 1.53083 1.20407 0.88802 0.93042 1.00111 1.22454 1.03059 0.91471 1.01150 1.18293 0.89628 0.84825 0.94799 1.84714 1.77596 1.33119 1.34871 1.22793 0.93945 1.00110 1.03125 1.19198 0.85228 0.86976 0.94381 1.84774 1.13196 1.95432 1.35497 1.67611 1.06823 1.31839 1.15102 0.91033 0.92446 0.87834 0.92680 0.95505 0.92100 0.83578 0.71278 0.79730 0.71193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.04 9.30 127.77 1.19 4.23 16 2 N -0.58 -26.28 2.86 -854.20 -2.44 -28.72 16 3 C 0.22 11.22 4.22 85.64 0.36 11.59 16 4 C -0.54 -32.96 9.94 25.60 0.25 -32.70 16 5 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 6 C 0.01 0.77 5.47 84.65 0.46 1.24 16 7 N -0.94 -60.50 13.96 21.45 0.30 -60.20 16 8 Si 0.95 44.91 27.47 68.60 1.88 46.79 16 9 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.24 -10.13 6.54 99.48 0.65 -9.47 16 12 C 0.55 24.55 7.66 86.88 0.67 25.21 16 13 O -0.58 -30.06 15.90 -3.77 -0.06 -30.12 16 14 C 0.11 3.88 6.62 41.80 0.28 4.16 16 15 C -0.16 -4.57 9.59 22.72 0.22 -4.36 16 16 C 0.18 3.59 6.77 22.72 0.15 3.74 16 17 O -0.49 -7.35 13.54 -90.83 -1.23 -8.58 16 18 C -0.18 -2.99 10.00 22.62 0.23 -2.77 16 19 C 0.32 6.85 7.74 84.85 0.66 7.50 16 20 O -0.48 -7.56 13.56 -89.95 -1.22 -8.78 16 21 N -0.49 -14.22 6.06 -298.36 -1.81 -16.03 16 22 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.06 2.08 8.03 -2.38 -0.02 2.06 16 24 H 0.10 3.60 5.26 -2.76 -0.01 3.58 16 25 H 0.06 2.57 7.13 -2.39 -0.02 2.55 16 26 H 0.03 1.44 6.82 -2.38 -0.02 1.42 16 27 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 28 H 0.15 4.45 7.65 -2.91 -0.02 4.42 16 29 H 0.42 2.11 9.06 -74.06 -0.67 1.43 16 30 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16 31 H 0.43 2.18 9.06 -74.06 -0.67 1.51 16 Total: -1.00 -82.79 276.96 -0.31 -83.11 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -0.20 Total: 4.69 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 4.46 Total: 17.84 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -3.95 Total: -104.95 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -2.51 Total: -47.48 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -82.79 -0.31 -83.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596909721.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.269 kcal (2) G-P(sol) polarization free energy of solvation -82.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds