Wall clock time and date at job start Sun Mar 29 2020 23:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86794 * 119.99620 * 2 1 4 4 H 1.48502 * 109.47416 * 274.98242 * 3 2 1 5 5 H 1.48506 * 109.47165 * 34.98366 * 3 2 1 6 6 H 1.48505 * 109.47219 * 154.98393 * 3 2 1 7 7 C 1.40105 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00119 * 173.82827 * 7 2 1 9 9 C 1.46231 * 120.00147 * 353.82637 * 7 2 1 10 10 O 1.21721 * 119.99780 * 6.08201 * 9 7 2 11 11 N 1.34781 * 120.00308 * 186.07171 * 9 7 2 12 12 C 1.39271 * 120.00139 * 185.15189 * 11 9 7 13 13 C 1.39665 * 120.83554 * 212.79439 * 12 11 9 14 14 C 1.37780 * 119.18272 * 180.32263 * 13 12 11 15 15 N 1.32064 * 120.92322 * 359.65933 * 14 13 12 16 16 C 1.32352 * 121.83690 * 0.02562 * 15 14 13 17 17 O 1.35688 * 119.64341 * 179.97438 * 16 15 14 18 18 C 1.42897 * 116.99818 * 0.02867 * 17 16 15 19 19 C 1.53001 * 109.47212 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.46960 * 64.99908 * 19 18 17 21 21 C 1.38637 * 120.71838 * 0.02739 * 16 15 14 22 22 H 0.96991 * 120.00566 * 0.02562 * 1 2 3 23 23 H 0.97000 * 119.99507 * 5.15604 * 11 9 7 24 24 H 1.07996 * 120.40979 * 0.02562 * 13 12 11 25 25 H 1.08001 * 119.53974 * 179.67895 * 14 13 12 26 26 H 1.09008 * 109.47228 * 299.99486 * 18 17 16 27 27 H 1.09006 * 109.47636 * 59.99468 * 18 17 16 28 28 H 1.09002 * 109.47272 * 184.99485 * 19 18 17 29 29 H 1.08991 * 109.47033 * 304.99800 * 19 18 17 30 30 H 0.96705 * 114.00267 * 180.02562 * 20 19 18 31 31 H 1.07997 * 120.49612 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3826 2.1073 -1.3948 5 1 1.4944 2.6200 0.8027 6 1 3.5867 1.4122 0.5921 7 6 2.0071 -1.2133 0.0005 8 1 3.0824 -1.2160 -0.1000 9 6 1.2824 -2.4760 0.1373 10 8 0.0652 -2.4820 0.1393 11 7 1.9621 -3.6333 0.2609 12 6 1.2759 -4.8450 0.2832 13 6 1.7476 -5.9210 1.0385 14 6 1.0453 -7.1064 1.0306 15 7 -0.0649 -7.2328 0.3266 16 6 -0.5497 -6.2367 -0.3975 17 8 -1.6939 -6.4157 -1.1045 18 6 -2.3157 -7.6994 -1.0180 19 6 -3.5834 -7.7108 -1.8746 20 8 -3.2301 -7.5538 -3.2502 21 6 0.0995 -5.0125 -0.4424 22 1 -0.4850 0.8399 -0.0004 23 1 2.9293 -3.6221 0.3344 24 1 2.6541 -5.8266 1.6178 25 1 1.4076 -7.9438 1.6085 26 1 -1.6259 -8.4624 -1.3791 27 1 -2.5768 -7.9076 0.0197 28 1 -4.1048 -8.6585 -1.7393 29 1 -4.2345 -6.8913 -1.5708 30 1 -3.9864 -7.5515 -3.8528 31 1 -0.2990 -4.2022 -1.0348 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598466894.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:42 Heat of formation + Delta-G solvation = -89.551678 kcal Electronic energy + Delta-G solvation = -17809.918975 eV Core-core repulsion = 14670.922135 eV Total energy + Delta-G solvation = -3138.996840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.12626 -38.36570 -37.21573 -36.30492 -33.83081 -32.55472 -30.77471 -29.95119 -28.92162 -26.47894 -23.47817 -22.80777 -21.87264 -20.04481 -18.12533 -17.71517 -17.50654 -16.25663 -15.58960 -15.50769 -15.26199 -14.79662 -14.49321 -14.12959 -13.99837 -13.49335 -12.89687 -12.63975 -12.54249 -12.36636 -11.55241 -11.37789 -11.24088 -11.10934 -10.75629 -10.69729 -10.39216 -10.14560 -9.87673 -9.25217 -8.98200 -8.04833 -7.78687 -7.50783 -6.40990 -4.88231 1.80510 1.95129 3.04648 3.11981 3.15889 3.37427 3.94929 4.17777 4.24144 4.49826 4.52355 4.79497 5.02977 5.18745 5.28200 5.51996 5.58846 5.65047 5.69706 5.83584 5.86849 6.32131 6.44751 6.72159 6.95561 7.23877 7.54691 7.62290 7.75558 7.91209 8.06817 8.43275 8.79047 9.09403 10.29482 10.49737 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.027359 B = 0.005072 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.197818 B = 5518.689250 C = 6359.673743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.074 0.926 9 C 0.538 3.462 10 O -0.553 6.553 11 N -0.690 5.690 12 C 0.260 3.740 13 C -0.262 4.262 14 C 0.146 3.854 15 N -0.577 5.577 16 C 0.330 3.670 17 O -0.298 6.298 18 C 0.074 3.926 19 C 0.076 3.924 20 O -0.566 6.566 21 C -0.201 4.201 22 H 0.273 0.727 23 H 0.398 0.602 24 H 0.130 0.870 25 H 0.151 0.849 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.378 0.622 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 -11.838 -0.764 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.572 4.572 8 H 0.092 0.908 9 C 0.345 3.655 10 O -0.434 6.434 11 N -0.333 5.333 12 C 0.152 3.848 13 C -0.287 4.287 14 C -0.009 4.009 15 N -0.304 5.304 16 C 0.153 3.847 17 O -0.205 6.205 18 C -0.002 4.002 19 C -0.002 4.002 20 O -0.371 6.371 21 C -0.225 4.225 22 H 0.084 0.916 23 H 0.232 0.768 24 H 0.148 0.852 25 H 0.169 0.831 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.224 0.776 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.257 -12.168 -0.702 12.395 hybrid contribution 0.803 1.343 0.048 1.565 sum -1.454 -10.825 -0.654 10.942 Atomic orbital electron populations 1.69989 1.07241 1.28004 1.33178 1.25756 0.94701 1.00621 0.92487 0.86243 0.80215 0.80829 0.78898 1.19582 1.20190 1.18648 1.20851 0.94439 0.89042 1.52899 0.90756 1.18511 0.87528 0.82005 0.77435 1.90665 1.13600 1.85454 1.53637 1.44241 1.09975 1.04004 1.75087 1.17857 0.91280 0.86487 0.89192 1.21685 1.05546 0.95456 1.06020 1.21883 0.89041 0.95934 0.94039 1.67210 1.16774 1.32434 1.13982 1.19523 0.86118 0.89812 0.89249 1.86307 1.35104 1.34225 1.64875 1.22544 0.93676 0.84838 0.99178 1.22285 0.95617 1.00253 0.82076 1.86601 1.37023 1.96784 1.16671 1.21070 0.98605 0.97027 1.05849 0.91585 0.76752 0.85218 0.83145 0.91238 0.90490 0.91756 0.92509 0.77588 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.87 11.85 55.55 0.66 -21.21 16 2 C 0.09 2.30 5.50 -17.35 -0.10 2.20 16 3 Si 0.91 19.25 29.56 -169.99 -5.03 14.23 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.54 -14.45 9.53 -35.67 -0.34 -14.79 16 8 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 9 C 0.54 14.85 7.50 -13.05 -0.10 14.75 16 10 O -0.55 -17.32 12.72 5.17 0.07 -17.26 16 11 N -0.69 -15.38 5.33 -11.04 -0.06 -15.44 16 12 C 0.26 5.56 6.33 -83.58 -0.53 5.03 16 13 C -0.26 -4.51 10.05 -39.22 -0.39 -4.91 16 14 C 0.15 2.36 11.16 -17.62 -0.20 2.17 16 15 N -0.58 -10.67 9.21 -13.42 -0.12 -10.79 16 16 C 0.33 6.88 7.48 -17.18 -0.13 6.75 16 17 O -0.30 -5.90 10.08 -23.63 -0.24 -6.14 16 18 C 0.07 1.09 5.69 37.16 0.21 1.30 16 19 C 0.08 0.88 7.43 37.16 0.28 1.15 16 20 O -0.57 -7.32 13.62 -40.09 -0.55 -7.87 16 21 C -0.20 -4.66 8.66 -39.06 -0.34 -4.99 16 22 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 23 H 0.40 7.40 8.80 -40.82 -0.36 7.04 16 24 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 25 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 26 H 0.07 1.04 8.10 -51.92 -0.42 0.62 16 27 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.38 2.81 9.12 45.56 0.42 3.22 16 31 H 0.15 4.04 6.45 -52.49 -0.34 3.70 16 LS Contribution 282.17 15.07 4.25 4.25 Total: -1.00 -35.47 282.17 -5.01 -40.48 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -2.36 Total: 11.07 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -1.63 Total: 8.67 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.48 Total: -47.44 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.72 Total: -31.26 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -35.47 -5.01 -40.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598466894.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.069 kcal (2) G-P(sol) polarization free energy of solvation -35.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds