Wall clock time and date at job start Sun Mar 29 2020 23:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34437 * 126.81179 * 2 1 4 4 N 1.36420 * 109.08532 * 180.02562 * 3 2 1 5 5 H 0.97001 * 124.81098 * 179.97438 * 4 3 2 6 6 C 1.34625 * 110.38475 * 359.97438 * 4 3 2 7 7 C 1.37845 * 108.20360 * 359.97438 * 6 4 3 8 8 C 1.47113 * 127.02510 * 179.73756 * 7 6 4 9 9 O 1.21542 * 120.00325 * 180.02562 * 8 7 6 10 10 O 1.34792 * 119.99739 * 0.02562 * 8 7 6 11 11 C 1.45197 * 116.99643 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47051 * 180.02562 * 11 10 8 13 13 O 1.21292 * 120.00057 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00407 * 180.02562 * 12 11 10 15 15 C 1.37093 * 120.00189 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00433 * 359.97438 * 15 14 12 17 17 C 1.38952 * 120.00007 * 179.97438 * 15 14 12 18 18 N 1.31417 * 120.00118 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99914 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47287 * 90.00303 * 19 17 15 21 21 H 1.48500 * 109.46920 * 210.00320 * 19 17 15 22 22 H 1.48496 * 109.47261 * 330.00124 * 19 17 15 23 23 H 1.08994 * 109.47172 * 269.98354 * 1 2 3 24 24 H 1.08997 * 109.46743 * 29.98209 * 1 2 3 25 25 H 1.08996 * 109.46541 * 149.97525 * 1 2 3 26 26 H 1.08005 * 125.45721 * 0.04875 * 3 2 1 27 27 H 1.07998 * 125.90410 * 180.02562 * 6 4 3 28 28 H 1.09000 * 109.47773 * 300.00537 * 11 10 8 29 29 H 1.09000 * 109.47236 * 60.00835 * 11 10 8 30 30 H 0.96996 * 119.99703 * 0.02562 * 14 12 11 31 31 H 0.96996 * 119.99570 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3126 1.0763 0.0000 4 7 3.6120 0.6609 -0.0006 5 1 4.3819 1.2509 -0.0011 6 6 3.6744 -0.6839 -0.0004 7 6 2.3864 -1.1747 0.0009 8 6 1.9768 -2.5877 -0.0038 9 8 0.7967 -2.8784 -0.0025 10 8 2.9104 -3.5599 -0.0097 11 6 2.4338 -4.9314 -0.0136 12 6 3.6109 -5.8723 -0.0193 13 8 4.7405 -5.4304 -0.0196 14 7 3.4087 -7.2048 -0.0241 15 6 4.4796 -8.0607 -0.0287 16 1 5.4854 -7.6673 -0.0290 17 6 4.2710 -9.4345 -0.0332 18 7 5.2976 -10.2549 -0.0371 19 14 2.5314 -10.1150 -0.0320 20 1 2.0676 -10.2905 -1.4317 21 1 2.5137 -11.4270 0.6635 22 1 1.6301 -9.1687 0.6732 23 1 -0.3633 -0.0003 1.0276 24 1 -0.3633 0.8901 -0.5136 25 1 -0.3632 -0.8898 -0.5142 26 1 1.9836 2.1051 0.0007 27 1 4.5777 -1.2759 -0.0004 28 1 1.8313 -5.1093 0.8772 29 1 1.8271 -5.1027 -0.9027 30 1 2.5054 -7.5582 -0.0242 31 1 5.1519 -11.2139 -0.0398 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731245062.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:32 Heat of formation + Delta-G solvation = -100.059955 kcal Electronic energy + Delta-G solvation = -17554.277137 eV Core-core repulsion = 14414.824624 eV Total energy + Delta-G solvation = -3139.452513 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.14336 -41.10219 -40.01927 -37.30786 -36.06950 -33.86237 -33.42784 -31.43313 -29.81265 -27.46543 -26.52068 -24.42145 -21.56670 -21.37375 -20.53313 -20.10329 -19.19392 -18.23647 -17.63952 -17.61411 -17.02036 -16.31989 -15.87370 -15.30995 -15.17458 -14.74144 -14.61144 -14.27219 -14.06904 -13.86891 -13.62237 -13.57019 -13.28247 -12.99761 -12.45941 -12.39522 -12.00129 -11.79301 -11.58335 -11.52395 -10.59392 -10.33772 -9.73505 -9.21383 -8.46074 -6.08927 0.45636 1.30456 1.33871 1.41833 1.44362 1.49888 1.75920 2.20447 2.25096 2.38340 2.91153 3.08493 3.83339 3.94552 4.04189 4.13734 4.16774 4.28906 4.41644 4.69440 4.88019 4.94734 5.15751 5.23133 5.40114 5.49694 5.78999 5.85265 5.89003 6.47900 6.62054 6.75931 6.86716 7.26005 7.77552 8.70545 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.046036 B = 0.004192 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.076903 B = 6676.999106 C = 7264.626159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.137 4.137 3 C -0.004 4.004 4 N -0.526 5.526 5 H 0.441 0.559 6 C 0.090 3.910 7 C -0.268 4.268 8 C 0.531 3.469 9 O -0.542 6.542 10 O -0.345 6.345 11 C 0.070 3.930 12 C 0.451 3.549 13 O -0.607 6.607 14 N -0.576 5.576 15 C -0.334 4.334 16 H 0.062 0.938 17 C -0.007 4.007 18 N -0.925 5.925 19 Si 0.960 3.040 20 H -0.255 1.255 21 H -0.271 1.271 22 H -0.233 1.233 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.049 0.951 26 H 0.214 0.786 27 H 0.191 0.809 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.393 0.607 31 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.508 22.140 0.070 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 C -0.131 4.131 4 N -0.121 5.121 5 H 0.282 0.718 6 C -0.050 4.050 7 C -0.276 4.276 8 C 0.380 3.620 9 O -0.434 6.434 10 O -0.261 6.261 11 C -0.008 4.008 12 C 0.238 3.762 13 O -0.492 6.492 14 N -0.218 5.218 15 C -0.462 4.462 16 H 0.080 0.920 17 C -0.207 4.207 18 N -0.565 5.565 19 Si 0.780 3.220 20 H -0.179 1.179 21 H -0.195 1.195 22 H -0.157 1.157 23 H 0.083 0.917 24 H 0.106 0.894 25 H 0.069 0.931 26 H 0.230 0.770 27 H 0.208 0.792 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.229 0.771 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.900 22.249 0.070 24.352 hybrid contribution -0.130 -1.070 0.015 1.078 sum -10.030 21.179 0.085 23.434 Atomic orbital electron populations 1.20181 0.88891 1.02666 1.02081 1.20797 0.96339 0.90029 1.07072 1.22100 0.81732 1.00129 1.09172 1.41607 1.09395 1.05992 1.55144 0.71799 1.22616 0.98447 0.84691 0.99242 1.19857 0.95272 0.88381 1.24088 1.20781 0.83235 0.86213 0.71790 1.90747 1.19242 1.84363 1.49056 1.86605 1.39539 1.15572 1.84393 1.22526 0.94247 0.78107 1.05893 1.20137 0.90237 0.83021 0.82816 1.90557 1.26313 1.77146 1.55135 1.41812 1.08488 1.04634 1.66886 1.19018 0.87949 0.88149 1.51118 0.92005 1.26069 1.03876 0.95148 0.95559 1.69779 1.33217 1.04361 1.49125 0.85427 0.77057 0.79326 0.80200 1.17897 1.19545 1.15664 0.91696 0.89357 0.93149 0.76969 0.79190 0.87057 0.86953 0.77128 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 9.98 71.24 0.71 -0.93 16 2 C -0.14 -3.03 6.35 -18.51 -0.12 -3.15 16 3 C 0.00 -0.05 11.80 83.11 0.98 0.93 16 4 N -0.53 -6.60 5.89 -193.81 -1.14 -7.75 16 5 H 0.44 1.89 8.96 -92.71 -0.83 1.06 16 6 C 0.09 1.90 11.79 84.17 0.99 2.89 16 7 C -0.27 -7.50 6.32 -18.82 -0.12 -7.62 16 8 C 0.53 18.49 7.95 70.15 0.56 19.05 16 9 O -0.54 -20.13 15.12 19.70 0.30 -19.83 16 10 O -0.35 -13.22 9.61 -50.64 -0.49 -13.71 16 11 C 0.07 2.56 5.95 71.24 0.42 2.99 16 12 C 0.45 21.62 7.86 87.66 0.69 22.31 16 13 O -0.61 -35.03 16.08 15.73 0.25 -34.78 16 14 N -0.58 -27.89 5.09 -306.99 -1.56 -29.45 16 15 C -0.33 -19.59 10.16 84.04 0.85 -18.74 16 16 H 0.06 4.28 7.39 -2.91 -0.02 4.26 16 17 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 18 N -0.93 -55.10 13.96 21.66 0.30 -54.80 16 19 Si 0.96 38.66 27.74 68.60 1.90 40.57 16 20 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 22 H -0.23 -8.05 6.52 99.48 0.65 -7.40 16 23 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.05 1.29 6.86 -2.39 -0.02 1.27 16 26 H 0.21 1.00 8.06 -2.91 -0.02 0.97 16 27 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 28 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 29 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 30 H 0.39 15.75 5.76 -92.71 -0.53 15.22 16 31 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -82.51 283.84 4.77 -77.75 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -0.24 Total: 24.17 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 5.44 Total: 17.84 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -2.40 Total: -92.00 kcal Atomic # 8 Polarization: -68.38 SS G_CDS: 0.06 Total: -68.32 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 1.90 Total: 40.57 kcal Total: -82.51 4.77 -77.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731245062.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.315 kcal (2) G-P(sol) polarization free energy of solvation -82.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds