Wall clock time and date at job start Sun Mar 29 2020 23:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35282 * 116.99947 * 2 1 4 4 N 1.32485 * 119.01453 * 180.02562 * 3 2 1 5 5 C 1.31998 * 120.92134 * 179.97438 * 4 3 2 6 6 C 1.40119 * 118.98140 * 0.27888 * 5 4 3 7 7 C 1.47490 * 120.88702 * 179.72572 * 6 5 4 8 8 O 1.21509 * 119.99733 * 359.97438 * 7 6 5 9 9 O 1.34737 * 120.00189 * 179.97438 * 7 6 5 10 10 C 1.45198 * 117.00142 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47264 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47548 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99460 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00449 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00133 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99911 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47302 * 89.99878 * 16 14 12 18 18 H 1.48499 * 109.47274 * 210.00010 * 16 14 12 19 19 H 1.48501 * 109.46841 * 330.00051 * 16 14 12 20 20 C 1.40115 * 118.22105 * 359.43571 * 6 5 4 21 21 N 1.32001 * 118.98289 * 0.56232 * 20 6 5 22 22 H 1.08999 * 109.46898 * 59.99469 * 1 2 3 23 23 H 1.08995 * 109.47163 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46703 * 300.00212 * 1 2 3 25 25 H 1.08002 * 120.50470 * 179.97438 * 5 4 3 26 26 H 1.09000 * 109.47117 * 300.00523 * 10 9 7 27 27 H 1.09004 * 109.47168 * 60.00035 * 10 9 7 28 28 H 1.09000 * 109.47410 * 300.00257 * 11 10 9 29 29 H 1.09004 * 109.47071 * 59.99889 * 11 10 9 30 30 H 0.97006 * 119.99931 * 179.97438 * 15 14 12 31 31 H 1.08006 * 120.50864 * 180.29190 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 7 3.3672 1.2520 -0.0005 5 6 4.0053 2.4075 -0.0010 6 6 3.2605 3.5943 0.0049 7 6 3.9301 4.9084 0.0106 8 8 5.1435 4.9719 0.0107 9 8 3.1963 6.0384 0.0158 10 6 3.9223 7.2959 0.0218 11 6 2.9282 8.4588 0.0278 12 6 3.6817 9.7639 0.0334 13 1 4.7617 9.7638 0.0332 14 6 2.9924 10.9579 0.0398 15 7 3.6500 12.0968 0.0452 16 14 1.1243 10.9580 0.0408 17 1 0.6301 10.9509 1.4411 18 1 0.6290 12.1740 -0.6528 19 1 0.6290 9.7491 -0.6651 20 6 1.8625 3.4993 -0.0010 21 7 1.3027 2.3039 -0.0005 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 5.0849 2.4376 -0.0010 26 1 4.5489 7.3494 0.9122 27 1 4.5492 7.3578 -0.8678 28 1 2.3013 8.4055 -0.8623 29 1 2.3017 8.3967 0.9176 30 1 3.1650 12.9369 0.0494 31 1 1.2524 4.3905 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734049900.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:32 Heat of formation + Delta-G solvation = -70.446316 kcal Electronic energy + Delta-G solvation = -17373.046589 eV Core-core repulsion = 14234.878219 eV Total energy + Delta-G solvation = -3138.168369 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.68563 -39.98821 -38.61466 -36.34021 -34.32116 -33.38456 -32.15895 -30.72282 -28.14007 -25.76412 -25.02779 -24.34685 -21.48402 -20.71406 -19.22963 -18.59663 -17.61374 -16.96840 -16.86268 -16.14322 -16.10151 -15.38448 -14.88033 -14.37010 -14.26668 -13.91347 -13.47818 -13.46747 -12.61253 -12.42470 -12.10136 -11.78758 -11.57484 -11.36340 -11.34943 -10.77975 -10.73335 -10.12406 -9.99887 -9.80605 -9.64044 -9.46343 -9.40559 -8.66968 -6.17223 -4.19029 0.15004 0.66163 2.10523 2.50388 2.83643 3.24277 3.32145 3.35005 3.44330 3.57237 4.12574 4.27175 4.34178 4.50915 4.82833 4.87612 4.93935 5.16234 5.16301 5.41596 5.63427 5.85650 5.89073 6.21471 6.36610 6.57961 6.68433 7.08194 7.14446 7.56356 7.58151 7.90610 8.34555 8.84309 9.41915 10.95289 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.036193 B = 0.004051 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.454649 B = 6911.062018 C = 7658.760638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.285 6.285 3 C 0.518 3.482 4 N -0.528 5.528 5 C 0.253 3.747 6 C -0.268 4.268 7 C 0.518 3.482 8 O -0.506 6.506 9 O -0.357 6.357 10 C 0.084 3.916 11 C -0.010 4.010 12 C -0.529 4.529 13 H 0.076 0.924 14 C 0.073 3.927 15 N -0.896 5.896 16 Si 0.881 3.119 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.263 1.263 20 C 0.249 3.751 21 N -0.574 5.574 22 H 0.067 0.933 23 H 0.106 0.894 24 H 0.067 0.933 25 H 0.193 0.807 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.029 0.971 29 H 0.024 0.976 30 H 0.266 0.734 31 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 -21.530 -0.130 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.185 6.185 3 C 0.218 3.782 4 N -0.253 5.253 5 C 0.087 3.913 6 C -0.274 4.274 7 C 0.361 3.639 8 O -0.395 6.395 9 O -0.273 6.273 10 C 0.012 3.988 11 C -0.047 4.047 12 C -0.567 4.567 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.708 3.292 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.188 1.188 20 C 0.082 3.918 21 N -0.303 5.303 22 H 0.085 0.915 23 H 0.124 0.876 24 H 0.085 0.915 25 H 0.210 0.790 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.986 -22.521 -0.131 23.580 hybrid contribution -0.622 1.183 0.026 1.337 sum -7.608 -21.338 -0.105 22.654 Atomic orbital electron populations 1.23100 0.75073 1.03888 1.03353 1.86073 1.23901 1.22586 1.85919 1.21063 0.86386 0.85038 0.85742 1.67783 1.07301 1.29496 1.20752 1.23422 1.01301 0.84021 0.82603 1.20900 0.96441 0.94016 1.16073 1.20307 0.85497 0.84635 0.73443 1.90850 1.14607 1.88098 1.45983 1.86501 1.42167 1.15718 1.82911 1.23480 0.95775 0.77402 1.02152 1.19642 0.95396 0.91696 0.97965 1.20822 0.95230 0.88052 1.52586 0.90589 1.24936 0.98714 0.95248 0.94089 1.69891 1.36056 0.97526 1.49915 0.86751 0.85732 0.77956 0.78752 1.20039 1.21158 1.18755 1.23551 0.91540 0.94746 0.81931 1.68198 1.40892 0.99007 1.22195 0.91451 0.87572 0.91463 0.79002 0.91367 0.91333 0.95294 0.95723 0.92373 0.79109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.35 101.05 1.05 1.32 16 2 O -0.28 -3.07 10.55 -17.54 -0.18 -3.26 16 3 C 0.52 6.32 8.48 -90.97 -0.77 5.55 16 4 N -0.53 -6.67 10.45 -14.38 -0.15 -6.82 16 5 C 0.25 2.94 10.87 -16.77 -0.18 2.76 16 6 C -0.27 -3.34 5.90 -104.72 -0.62 -3.96 16 7 C 0.52 8.06 7.90 34.50 0.27 8.33 16 8 O -0.51 -8.98 16.23 -19.27 -0.31 -9.29 16 9 O -0.36 -6.09 9.56 -40.59 -0.39 -6.48 16 10 C 0.08 1.68 5.41 37.16 0.20 1.88 16 11 C -0.01 -0.22 4.42 -27.88 -0.12 -0.34 16 12 C -0.53 -14.57 9.66 -34.44 -0.33 -14.90 16 13 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 15 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 16 Si 0.88 20.79 27.47 -169.99 -4.67 16.12 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 20 C 0.25 2.80 10.90 -16.78 -0.18 2.62 16 21 N -0.57 -6.62 9.19 -14.38 -0.13 -6.76 16 22 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 23 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 25 H 0.19 1.85 7.74 -52.49 -0.41 1.45 16 26 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 29 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.19 1.82 7.71 -52.48 -0.40 1.42 16 LS Contribution 284.63 15.07 4.29 4.29 Total: -1.00 -31.87 284.63 -4.83 -36.70 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: -3.27 Total: -3.63 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -0.79 Total: 5.20 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.49 Total: -39.64 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.89 Total: -19.04 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.12 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.87 -4.83 -36.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734049900.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.746 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds