Wall clock time and date at job start Sun Mar 29 2020 23:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36430 * 124.81022 * 2 1 4 4 C 1.34436 * 109.08611 * 179.97438 * 3 2 1 5 5 C 1.46745 * 106.37004 * 0.02562 * 4 3 2 6 6 C 1.47116 * 127.01832 * 179.97438 * 5 4 3 7 7 O 1.21552 * 119.99689 * 180.02562 * 6 5 4 8 8 O 1.34777 * 120.00065 * 0.02614 * 6 5 4 9 9 C 1.45201 * 116.99944 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47235 * 179.97438 * 9 8 6 11 11 O 1.21297 * 119.99998 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00098 * 179.97438 * 10 9 8 13 13 C 1.37095 * 120.00028 * 179.97438 * 12 10 9 14 14 H 1.07999 * 120.00506 * 0.02562 * 13 12 10 15 15 C 1.38950 * 119.99908 * 180.02562 * 13 12 10 16 16 N 1.31413 * 119.99920 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 120.00339 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47252 * 89.99627 * 17 15 13 19 19 H 1.48502 * 109.47267 * 210.00242 * 17 15 13 20 20 H 1.48503 * 109.46851 * 329.99704 * 17 15 13 21 21 C 1.34631 * 124.81099 * 180.28428 * 2 1 3 22 22 H 1.09006 * 109.46848 * 90.02696 * 1 2 3 23 23 H 1.08993 * 109.47391 * 210.02590 * 1 2 3 24 24 H 1.08999 * 109.47325 * 330.03128 * 1 2 3 25 25 H 1.08000 * 125.45631 * 359.95497 * 3 2 1 26 26 H 1.07996 * 126.81449 * 179.97438 * 4 3 2 27 27 H 1.09002 * 109.47361 * 299.99666 * 9 8 6 28 28 H 1.09002 * 109.47271 * 59.99892 * 9 8 6 29 29 H 0.96997 * 120.00128 * 0.02562 * 12 10 9 30 30 H 0.96999 * 119.99888 * 180.02562 * 16 15 13 31 31 H 1.08001 * 125.89008 * 0.03600 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2438 1.1202 0.0000 4 6 3.5379 0.7558 0.0006 5 6 3.5544 -0.7115 0.0003 6 6 4.7390 -1.5840 0.0002 7 8 4.6040 -2.7920 -0.0005 8 8 5.9738 -1.0438 0.0009 9 6 7.0962 -1.9649 0.0013 10 6 8.3859 -1.1853 0.0014 11 8 8.3614 0.0274 0.0016 12 7 9.5664 -1.8355 0.0023 13 6 10.7396 -1.1262 0.0019 14 1 10.7180 -0.0465 0.0012 15 6 11.9567 -1.7966 0.0023 16 7 13.0813 -1.1168 0.0024 17 14 11.9944 -3.6642 0.0027 18 1 12.0046 -4.1594 -1.3972 19 1 13.2165 -4.1345 0.7031 20 1 10.7920 -4.1834 0.7027 21 6 2.2336 -1.1054 -0.0055 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3634 0.8902 0.5133 25 1 1.8792 2.1367 -0.0007 26 1 4.3951 1.4127 0.0003 27 1 7.0507 -2.5927 0.8912 28 1 7.0516 -2.5925 -0.8888 29 1 9.5860 -2.8053 0.0025 30 1 13.9310 -1.5847 0.0023 31 1 1.8766 -2.1247 -0.0111 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764116449.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:38 Heat of formation + Delta-G solvation = -61.295852 kcal Electronic energy + Delta-G solvation = -17377.609324 eV Core-core repulsion = 14239.837749 eV Total energy + Delta-G solvation = -3137.771575 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.33410 -39.74542 -38.14685 -35.85963 -33.96839 -33.05329 -31.71729 -29.46294 -28.61227 -26.92418 -24.48499 -22.87256 -20.52315 -19.68345 -19.50963 -18.48502 -17.98009 -16.64908 -16.18969 -15.86918 -15.55298 -15.18905 -14.75471 -14.12677 -13.97021 -13.52477 -13.26393 -12.93935 -12.70860 -12.67687 -12.34109 -12.20904 -12.15523 -11.83318 -11.19905 -10.58653 -10.31878 -10.31565 -9.98161 -9.59741 -8.80462 -8.56006 -8.52000 -8.21507 -6.32407 -3.84772 1.49790 2.28983 2.45365 3.04625 3.06471 3.10034 3.18047 3.41410 3.66564 4.10357 4.36520 4.61499 4.69165 4.71505 4.82850 4.97061 5.19226 5.22550 5.35883 5.54296 5.69056 5.78639 5.79823 6.03450 6.57099 6.72953 6.84762 6.98587 7.53270 8.07264 8.14041 8.56486 8.91466 9.37913 9.75165 10.80137 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.057116 B = 0.003844 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.111785 B = 7282.423508 C = 7752.087229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.445 5.445 3 C -0.030 4.030 4 C -0.136 4.136 5 C -0.220 4.220 6 C 0.539 3.461 7 O -0.532 6.532 8 O -0.319 6.319 9 C 0.059 3.941 10 C 0.451 3.549 11 O -0.556 6.556 12 N -0.582 5.582 13 C -0.306 4.306 14 H 0.122 0.878 15 C 0.044 3.956 16 N -0.878 5.878 17 Si 0.879 3.121 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.268 1.268 21 C 0.080 3.920 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.169 0.831 26 H 0.157 0.843 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.373 0.627 30 H 0.275 0.725 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.390 -1.356 0.017 24.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.121 5.121 3 C -0.156 4.156 4 C -0.159 4.159 5 C -0.229 4.229 6 C 0.385 3.615 7 O -0.424 6.424 8 O -0.233 6.233 9 C -0.019 4.019 10 C 0.236 3.764 11 O -0.437 6.437 12 N -0.223 5.223 13 C -0.434 4.434 14 H 0.140 0.860 15 C -0.160 4.160 16 N -0.517 5.517 17 Si 0.705 3.295 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.193 1.193 21 C -0.056 4.056 22 H 0.095 0.905 23 H 0.104 0.896 24 H 0.106 0.894 25 H 0.187 0.813 26 H 0.175 0.825 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.206 0.794 30 H 0.085 0.915 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -24.524 -0.810 0.021 24.538 hybrid contribution 0.272 -1.676 0.004 1.698 sum -24.252 -2.486 0.025 24.379 Atomic orbital electron populations 1.22135 0.76671 1.04761 1.03651 1.43601 1.06867 1.05948 1.55641 1.21796 0.90504 0.91236 1.12018 1.22287 0.96379 0.93172 1.04060 1.19620 0.89904 0.93439 1.19935 1.20195 0.83069 0.86122 0.72099 1.90802 1.87460 1.15745 1.48385 1.86630 1.13712 1.39518 1.83446 1.22695 0.84320 0.91407 1.03459 1.19244 0.83657 0.88461 0.85084 1.90599 1.86513 1.13349 1.53269 1.42034 1.05510 1.07810 1.66915 1.19428 0.80778 0.94821 1.48414 0.86040 1.25028 0.94926 0.98609 0.97400 1.69618 0.97434 1.35858 1.48829 0.86676 0.78594 0.85175 0.79056 1.19453 1.20044 1.19310 1.21984 0.89268 0.91865 1.02483 0.90532 0.89553 0.89425 0.81335 0.82514 0.89539 0.89537 0.79403 0.91483 0.80451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 11.03 59.85 0.66 0.93 16 2 N -0.44 -3.86 3.08 -124.24 -0.38 -4.24 16 3 C -0.03 -0.29 11.32 -16.85 -0.19 -0.48 16 4 C -0.14 -1.78 11.00 -37.49 -0.41 -2.19 16 5 C -0.22 -3.23 6.33 -103.01 -0.65 -3.89 16 6 C 0.54 9.57 7.95 34.33 0.27 9.84 16 7 O -0.53 -9.97 16.71 -19.31 -0.32 -10.29 16 8 O -0.32 -6.37 9.66 -47.38 -0.46 -6.83 16 9 C 0.06 1.15 5.95 36.01 0.21 1.36 16 10 C 0.45 10.91 7.86 -10.99 -0.09 10.82 16 11 O -0.56 -15.80 16.08 -14.12 -0.23 -16.03 16 12 N -0.58 -14.30 5.09 -10.96 -0.06 -14.35 16 13 C -0.31 -8.77 10.16 -14.93 -0.15 -8.92 16 14 H 0.12 3.95 7.39 -52.49 -0.39 3.56 16 15 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 16 N -0.88 -25.69 13.96 55.50 0.77 -24.92 16 17 Si 0.88 19.51 27.74 -169.99 -4.71 14.79 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 21 C 0.08 0.89 11.18 -16.47 -0.18 0.70 16 22 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 23 H 0.09 0.22 8.13 -51.93 -0.42 -0.20 16 24 H 0.09 0.20 8.13 -51.93 -0.42 -0.22 16 25 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 26 H 0.16 2.11 8.06 -52.49 -0.42 1.69 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 28 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.37 7.99 5.76 -40.82 -0.24 7.75 16 30 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 287.64 15.07 4.33 4.33 Total: -1.00 -36.25 287.64 -4.85 -41.10 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -3.17 Total: 7.15 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -0.63 Total: 9.28 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.34 Total: -43.51 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.01 Total: -33.14 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.71 Total: 14.79 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -36.25 -4.85 -41.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764116449.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.196 kcal (2) G-P(sol) polarization free energy of solvation -36.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds