Wall clock time and date at job start Sun Mar 29 2020 22:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99977 * 2 1 4 4 H 1.48492 * 109.47272 * 270.00104 * 3 2 1 5 5 H 1.48501 * 109.47139 * 30.00427 * 3 2 1 6 6 H 1.48501 * 109.47260 * 150.00065 * 3 2 1 7 7 C 1.37877 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00006 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00009 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46959 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47291 * 179.97438 * 10 9 7 12 12 C 1.34750 * 117.00420 * 179.97438 * 11 10 9 13 13 O 1.21509 * 120.00011 * 0.02562 * 12 11 10 14 14 C 1.47410 * 120.00324 * 180.02562 * 12 11 10 15 15 C 1.39866 * 120.17272 * 0.20357 * 14 12 11 16 16 C 1.37717 * 119.99527 * 180.25459 * 15 14 12 17 17 C 1.38559 * 120.35801 * 359.79670 * 16 15 14 18 18 C 1.38426 * 120.34347 * 359.97376 * 17 16 15 19 19 O 1.36004 * 120.00188 * 180.02562 * 18 17 16 20 20 C 1.39180 * 119.99987 * 0.02562 * 18 17 16 21 21 O 1.35722 * 120.17660 * 179.97438 * 20 18 17 22 22 H 0.97001 * 119.99714 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47032 * 60.00466 * 9 7 2 24 24 H 1.09004 * 109.47184 * 300.00106 * 9 7 2 25 25 H 1.09004 * 109.47309 * 59.99962 * 10 9 7 26 26 H 1.09005 * 109.47694 * 300.00044 * 10 9 7 27 27 H 1.07998 * 119.99781 * 0.02945 * 15 14 12 28 28 H 1.07999 * 119.82434 * 179.77231 * 16 15 14 29 29 H 1.07991 * 119.82975 * 179.97438 * 17 16 15 30 30 H 0.96702 * 114.00277 * 269.98017 * 19 18 17 31 31 H 0.96700 * 114.00318 * 90.00031 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 8 5.4735 -2.6365 -0.0011 12 6 6.0853 -3.8371 -0.0006 13 8 5.4236 -4.8562 0.0003 14 6 7.5574 -3.9143 -0.0012 15 6 8.3227 -2.7436 0.0021 16 6 9.6978 -2.8199 -0.0037 17 6 10.3307 -4.0525 -0.0086 18 6 9.5874 -5.2203 -0.0071 19 8 10.2159 -6.4264 -0.0114 20 6 8.1969 -5.1601 -0.0012 21 8 7.4646 -6.3029 -0.0003 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6796 0.8895 24 1 3.8746 -0.6807 -0.8905 25 1 3.6579 -3.1505 -0.8897 26 1 3.6586 -3.1502 0.8903 27 1 7.8353 -1.7799 0.0055 28 1 10.2860 -1.9142 -0.0049 29 1 11.4094 -4.1024 -0.0136 30 1 10.3937 -6.7742 -0.8960 31 1 7.2561 -6.6357 0.8834 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776279419.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:38 Heat of formation + Delta-G solvation = -148.853149 kcal Electronic energy + Delta-G solvation = -17666.551958 eV Core-core repulsion = 14492.690863 eV Total energy + Delta-G solvation = -3173.861096 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76316 -39.45991 -37.20593 -36.74801 -35.97863 -33.32874 -31.35740 -30.48154 -29.50309 -25.68269 -24.06896 -22.76067 -21.13239 -20.61374 -18.92500 -18.43280 -17.28112 -16.62309 -16.58460 -16.14185 -15.71344 -15.66663 -15.14119 -14.24760 -14.22063 -13.52401 -13.32249 -12.85815 -12.60186 -12.40494 -12.28734 -11.58746 -11.49773 -11.29243 -10.84468 -10.71213 -10.47816 -9.97338 -9.87074 -9.72521 -9.36569 -9.24868 -8.88291 -8.63850 -6.14233 -4.15602 0.42349 0.81943 2.55707 2.93343 3.26516 3.33880 3.37099 3.37666 3.76989 4.05320 4.37036 4.60403 4.64782 4.91276 5.05187 5.19238 5.35980 5.41281 5.83373 5.89666 5.95312 5.96261 6.01918 6.27449 6.43335 6.73295 7.15502 7.18691 7.19815 7.51306 7.60698 8.09122 8.38304 8.87523 9.45114 10.98362 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.041743 B = 0.004342 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.608329 B = 6447.012008 C = 7091.910269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.084 3.916 11 O -0.358 6.358 12 C 0.499 3.501 13 O -0.494 6.494 14 C -0.135 4.135 15 C -0.054 4.054 16 C -0.128 4.128 17 C -0.101 4.101 18 C 0.064 3.936 19 O -0.489 6.489 20 C 0.147 3.853 21 O -0.472 6.472 22 H 0.266 0.734 23 H 0.028 0.972 24 H 0.024 0.976 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.149 0.851 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.392 0.608 31 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.737 -7.187 0.037 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.046 4.046 10 C 0.011 3.989 11 O -0.275 6.275 12 C 0.343 3.657 13 O -0.383 6.383 14 C -0.137 4.137 15 C -0.073 4.073 16 C -0.146 4.146 17 C -0.120 4.120 18 C 0.018 3.982 19 O -0.299 6.299 20 C 0.100 3.900 21 O -0.283 6.283 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.166 0.834 28 H 0.156 0.844 29 H 0.155 0.845 30 H 0.248 0.752 31 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 22.309 -7.257 0.050 23.460 hybrid contribution 0.160 0.640 -0.049 0.662 sum 22.470 -6.617 0.001 23.424 Atomic orbital electron populations 1.69896 1.06294 1.27223 1.50057 1.24938 0.94765 0.99182 0.94114 0.86745 0.80409 0.83274 0.78736 1.20044 1.21160 1.18772 1.20842 0.88251 0.95078 1.52433 0.90622 1.19628 0.97036 0.90087 0.97885 1.23415 0.71855 1.01662 1.01918 1.86521 1.26486 1.31286 1.83169 1.20761 0.88274 0.82564 0.74115 1.90851 1.66602 1.36056 1.44758 1.19687 0.91082 0.93784 1.09143 1.21567 0.93687 0.98301 0.93720 1.21066 0.94294 0.97722 1.01499 1.21594 1.00836 0.91478 0.98064 1.18637 0.88797 0.86025 1.04708 1.84818 1.78547 1.32731 1.33803 1.18895 0.88689 0.85597 0.96826 1.84703 1.72316 1.37571 1.33734 0.92412 0.95349 0.95782 0.91591 0.91584 0.83364 0.84359 0.84453 0.75156 0.74268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.53 -14.99 9.66 -34.44 -0.33 -15.33 16 8 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 9 C -0.01 -0.21 4.42 -27.88 -0.12 -0.34 16 10 C 0.08 1.80 5.41 37.16 0.20 2.00 16 11 O -0.36 -6.82 9.47 -40.63 -0.38 -7.20 16 12 C 0.50 8.88 7.89 34.46 0.27 9.15 16 13 O -0.49 -9.90 14.95 -26.60 -0.40 -10.29 16 14 C -0.14 -1.90 5.88 -104.88 -0.62 -2.51 16 15 C -0.05 -0.61 9.61 -39.16 -0.38 -0.99 16 16 C -0.13 -1.09 10.02 -39.65 -0.40 -1.49 16 17 C -0.10 -0.85 9.97 -39.39 -0.39 -1.24 16 18 C 0.06 0.65 6.71 -39.16 -0.26 0.39 16 19 O -0.49 -4.40 13.29 -34.28 -0.46 -4.85 16 20 C 0.15 1.88 6.73 -38.56 -0.26 1.62 16 21 O -0.47 -6.29 11.36 -47.47 -0.54 -6.83 16 22 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 24 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 25 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 26 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.15 1.61 7.61 -52.49 -0.40 1.21 16 28 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 29 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.39 1.89 9.06 45.56 0.41 2.30 16 31 H 0.40 3.98 9.06 45.56 0.41 4.39 16 LS Contribution 282.21 15.07 4.25 4.25 Total: -1.00 -34.19 282.21 -5.42 -39.61 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -1.62 Total: 2.03 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -2.39 Total: -6.74 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: 0.77 Total: -26.54 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -1.78 Total: -29.18 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -34.19 -5.42 -39.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776279419.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.241 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds