Wall clock time and date at job start Sun Mar 29 2020 22:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99977 * 2 1 4 4 H 1.48492 * 109.47272 * 270.00104 * 3 2 1 5 5 H 1.48501 * 109.47139 * 30.00427 * 3 2 1 6 6 H 1.48501 * 109.47260 * 150.00065 * 3 2 1 7 7 C 1.37877 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00006 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00009 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46959 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47291 * 179.97438 * 10 9 7 12 12 C 1.34750 * 117.00420 * 179.97438 * 11 10 9 13 13 O 1.21509 * 120.00011 * 0.02562 * 12 11 10 14 14 C 1.47410 * 120.00324 * 180.02562 * 12 11 10 15 15 C 1.39866 * 120.17272 * 0.20357 * 14 12 11 16 16 C 1.37717 * 119.99527 * 180.25459 * 15 14 12 17 17 C 1.38559 * 120.35801 * 359.79670 * 16 15 14 18 18 C 1.38426 * 120.34347 * 359.97376 * 17 16 15 19 19 O 1.36004 * 120.00188 * 180.02562 * 18 17 16 20 20 C 1.39180 * 119.99987 * 0.02562 * 18 17 16 21 21 O 1.35722 * 120.17660 * 179.97438 * 20 18 17 22 22 H 0.97001 * 119.99714 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47032 * 60.00466 * 9 7 2 24 24 H 1.09004 * 109.47184 * 300.00106 * 9 7 2 25 25 H 1.09004 * 109.47309 * 59.99962 * 10 9 7 26 26 H 1.09005 * 109.47694 * 300.00044 * 10 9 7 27 27 H 1.07998 * 119.99781 * 0.02945 * 15 14 12 28 28 H 1.07999 * 119.82434 * 179.77231 * 16 15 14 29 29 H 1.07991 * 119.82975 * 179.97438 * 17 16 15 30 30 H 0.96702 * 114.00277 * 269.98017 * 19 18 17 31 31 H 0.96700 * 114.00318 * 90.00031 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 8 5.4735 -2.6365 -0.0011 12 6 6.0853 -3.8371 -0.0006 13 8 5.4236 -4.8562 0.0003 14 6 7.5574 -3.9143 -0.0012 15 6 8.3227 -2.7436 0.0021 16 6 9.6978 -2.8199 -0.0037 17 6 10.3307 -4.0525 -0.0086 18 6 9.5874 -5.2203 -0.0071 19 8 10.2159 -6.4264 -0.0114 20 6 8.1969 -5.1601 -0.0012 21 8 7.4646 -6.3029 -0.0003 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6796 0.8895 24 1 3.8746 -0.6807 -0.8905 25 1 3.6579 -3.1505 -0.8897 26 1 3.6586 -3.1502 0.8903 27 1 7.8353 -1.7799 0.0055 28 1 10.2860 -1.9142 -0.0049 29 1 11.4094 -4.1024 -0.0136 30 1 10.3937 -6.7742 -0.8960 31 1 7.2561 -6.6357 0.8834 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776279419.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:37 Heat of formation + Delta-G solvation = -174.328625 kcal Electronic energy + Delta-G solvation = -17667.656658 eV Core-core repulsion = 14492.690863 eV Total energy + Delta-G solvation = -3174.965795 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.85549 -40.64052 -38.17494 -37.55387 -37.41000 -35.39993 -32.95301 -31.81618 -30.30601 -27.45552 -25.32548 -23.59513 -22.71812 -22.13843 -19.93694 -19.36501 -19.01606 -18.09275 -17.66754 -17.59776 -16.80667 -16.63385 -16.32355 -15.95561 -15.24192 -14.98439 -14.92104 -14.40174 -13.70404 -13.40170 -13.34988 -13.14661 -13.03943 -12.49786 -12.46879 -12.31047 -11.88244 -11.80954 -11.55821 -11.47081 -11.11178 -10.81853 -10.10208 -9.66882 -8.34929 -6.43804 -0.50679 0.05090 1.38588 1.40559 1.41541 1.53047 1.57102 2.34558 2.45984 2.96959 2.99931 3.27965 3.52919 3.94493 4.05109 4.13794 4.17094 4.26469 4.50248 4.60909 4.67240 4.96676 5.10606 5.14902 5.26696 5.27214 5.44965 5.50688 5.59878 6.14568 6.52635 6.62187 6.65117 6.78577 7.21385 8.81311 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.041743 B = 0.004342 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.608329 B = 6447.012008 C = 7091.910269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.241 1.241 7 C -0.545 4.545 8 H 0.033 0.967 9 C -0.001 4.001 10 C 0.095 3.905 11 O -0.354 6.354 12 C 0.496 3.504 13 O -0.528 6.528 14 C -0.164 4.164 15 C -0.059 4.059 16 C -0.113 4.113 17 C -0.082 4.082 18 C 0.066 3.934 19 O -0.495 6.495 20 C 0.128 3.872 21 O -0.491 6.491 22 H 0.271 0.729 23 H 0.038 0.962 24 H 0.036 0.964 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.151 0.849 28 H 0.177 0.823 29 H 0.174 0.826 30 H 0.411 0.589 31 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.735 -5.601 -0.003 27.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.165 1.165 7 C -0.583 4.583 8 H 0.051 0.949 9 C -0.039 4.039 10 C 0.021 3.979 11 O -0.271 6.271 12 C 0.342 3.658 13 O -0.418 6.418 14 C -0.165 4.165 15 C -0.077 4.077 16 C -0.130 4.130 17 C -0.101 4.101 18 C 0.020 3.980 19 O -0.308 6.308 20 C 0.081 3.919 21 O -0.304 6.304 22 H 0.080 0.920 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.168 0.832 28 H 0.194 0.806 29 H 0.191 0.809 30 H 0.270 0.730 31 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 26.337 -5.698 0.002 26.946 hybrid contribution -1.008 0.006 -0.040 1.009 sum 25.329 -5.692 -0.038 25.960 Atomic orbital electron populations 1.70048 1.08424 1.28691 1.51298 1.25986 0.95688 1.03704 0.93302 0.85571 0.79591 0.77411 0.79596 1.18720 1.20606 1.16450 1.21119 0.90759 0.93807 1.52626 0.94859 1.19457 0.94097 0.91652 0.98672 1.22978 0.73740 1.00088 1.01057 1.86498 1.24581 1.32381 1.83604 1.21554 0.89944 0.81473 0.72798 1.90826 1.67657 1.36768 1.46588 1.19606 0.88452 0.95635 1.12843 1.21711 0.95002 0.97255 0.93739 1.21464 0.93071 0.99336 0.99151 1.22015 1.02482 0.90380 0.95183 1.18703 0.87758 0.87272 1.04232 1.84778 1.77998 1.32461 1.35575 1.19184 0.89880 0.84874 0.97935 1.84661 1.72897 1.38071 1.34784 0.92014 0.94320 0.94551 0.92702 0.92442 0.83167 0.80559 0.80864 0.72985 0.73342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 2 C 0.01 0.65 5.47 84.65 0.46 1.11 16 3 Si 0.96 43.05 27.47 68.60 1.88 44.94 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.24 -9.95 6.54 99.48 0.65 -9.30 16 7 C -0.55 -31.83 9.66 25.60 0.25 -31.58 16 8 H 0.03 2.15 7.99 -2.91 -0.02 2.12 16 9 C 0.00 -0.06 4.42 29.85 0.13 0.07 16 10 C 0.09 4.17 5.41 71.98 0.39 4.56 16 11 O -0.35 -13.53 9.47 -56.61 -0.54 -14.06 16 12 C 0.50 18.01 7.89 70.24 0.55 18.57 16 13 O -0.53 -22.08 14.95 26.82 0.40 -21.67 16 14 C -0.16 -4.49 5.88 -20.03 -0.12 -4.61 16 15 C -0.06 -1.19 9.61 22.54 0.22 -0.97 16 16 C -0.11 -1.41 10.02 22.22 0.22 -1.19 16 17 C -0.08 -1.00 9.97 22.39 0.22 -0.78 16 18 C 0.07 1.18 6.71 22.54 0.15 1.33 16 19 O -0.50 -7.58 13.29 -79.71 -1.06 -8.64 16 20 C 0.13 3.18 6.73 22.93 0.15 3.33 16 21 O -0.49 -13.36 11.36 -63.10 -0.72 -14.08 16 22 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 23 H 0.04 1.77 7.20 -2.39 -0.02 1.75 16 24 H 0.04 1.65 7.57 -2.39 -0.02 1.63 16 25 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 27 H 0.15 2.91 7.61 -2.91 -0.02 2.89 16 28 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 29 H 0.17 0.94 8.06 -2.92 -0.02 0.92 16 30 H 0.41 2.84 9.06 -74.06 -0.67 2.17 16 31 H 0.41 8.57 9.06 -74.06 -0.67 7.90 16 Total: -1.00 -76.37 282.21 2.69 -73.67 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -0.21 Total: 8.70 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 2.64 Total: -10.16 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.30 Total: -58.70 kcal Atomic # 8 Polarization: -56.55 SS G_CDS: -1.91 Total: -58.46 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.88 Total: 44.94 kcal Total: -76.37 2.69 -73.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776279419.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.655 kcal (2) G-P(sol) polarization free energy of solvation -76.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds