Wall clock time and date at job start Sun Mar 29 2020 23:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35671 * 117.00082 * 2 1 4 4 C 1.39519 * 120.00920 * 180.02562 * 3 2 1 5 5 N 1.31949 * 120.11646 * 179.97438 * 4 3 2 6 6 C 1.32190 * 120.14692 * 0.02562 * 5 4 3 7 7 C 1.39277 * 120.01725 * 359.97438 * 6 5 4 8 8 C 1.48034 * 120.05937 * 179.97438 * 7 6 5 9 9 O 1.21440 * 119.99566 * 359.73111 * 8 7 6 10 10 O 1.34685 * 120.00277 * 180.02562 * 8 7 6 11 11 C 1.45199 * 117.00112 * 179.72585 * 10 8 7 12 12 H 1.08993 * 109.47126 * 330.00147 * 11 10 8 13 13 C 1.53005 * 109.46809 * 90.00298 * 11 10 8 14 14 C 1.50696 * 109.46873 * 210.00113 * 11 10 8 15 15 H 1.07999 * 120.00220 * 359.97438 * 14 11 10 16 16 C 1.37881 * 119.99775 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00032 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 120.00215 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47039 * 89.99654 * 18 16 14 20 20 H 1.48500 * 109.47631 * 210.00209 * 18 16 14 21 21 H 1.48502 * 109.47318 * 329.99958 * 18 16 14 22 22 N 1.32145 * 120.00788 * 0.22092 * 3 2 1 23 23 H 1.08997 * 109.46683 * 299.99358 * 1 2 3 24 24 H 1.08999 * 109.47292 * 59.99403 * 1 2 3 25 25 H 1.09001 * 109.47027 * 180.02562 * 1 2 3 26 26 H 1.07997 * 119.94068 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.98872 * 180.02562 * 6 5 4 28 28 H 1.08993 * 109.47400 * 60.00016 * 13 11 10 29 29 H 1.08999 * 109.46472 * 180.02562 * 13 11 10 30 30 H 1.09004 * 109.47073 * 299.99296 * 13 11 10 31 31 H 0.96996 * 120.00145 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4382 1.2820 -0.0005 5 7 4.0395 2.4566 -0.0011 6 6 3.3244 3.5684 -0.0005 7 6 1.9333 3.5021 0.0000 8 6 1.1316 4.7466 0.0011 9 8 1.6870 5.8266 0.0065 10 8 -0.2136 4.6812 0.0022 11 6 -0.9349 5.9414 0.0095 12 1 -0.3425 6.6961 0.5265 13 6 -1.1898 6.3914 -1.4305 14 6 -2.2516 5.7624 0.7203 15 1 -2.5197 4.7979 1.1257 16 6 -3.1144 6.8297 0.8523 17 7 -2.7886 8.0038 0.3573 18 14 -4.7468 6.6078 1.7327 19 1 -4.5711 6.8906 3.1799 20 1 -5.7480 7.5450 1.1632 21 1 -5.2192 5.2111 1.5552 22 7 1.3254 2.3172 0.0044 23 1 -0.3632 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 4.0256 0.3758 -0.0014 27 1 3.8192 4.5284 -0.0014 28 1 -1.7822 5.6367 -1.9476 29 1 -1.7308 7.3376 -1.4250 30 1 -0.2374 6.5209 -1.9447 31 1 -3.3954 8.7547 0.4504 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791811777.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:59 Heat of formation + Delta-G solvation = -71.035522 kcal Electronic energy + Delta-G solvation = -18107.296443 eV Core-core repulsion = 14969.102523 eV Total energy + Delta-G solvation = -3138.193919 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.47832 -39.48926 -38.41465 -35.87628 -34.36503 -33.26039 -31.32269 -29.62726 -27.72068 -25.75966 -25.33036 -23.89954 -22.14903 -20.24365 -18.41022 -18.37359 -16.95581 -16.81814 -16.45376 -16.33304 -15.58540 -15.21586 -14.71293 -14.51257 -14.01929 -13.30072 -13.01199 -12.32708 -12.23396 -11.97571 -11.76183 -11.63950 -11.33546 -11.12130 -10.99729 -10.89357 -10.43764 -10.39690 -10.26305 -9.64024 -9.37181 -8.97455 -8.92398 -8.53569 -6.22419 -4.29298 0.26249 0.93982 2.73566 2.76716 3.09933 3.22765 3.28699 3.33938 3.70235 3.90540 4.14942 4.26401 4.34469 4.97795 5.10775 5.14325 5.23508 5.28803 5.50704 5.59448 5.89649 6.53819 6.79517 6.82534 6.83830 6.91623 7.02974 7.46074 7.51779 7.64880 7.82699 8.06791 8.45969 8.80405 9.35901 10.85142 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.026860 B = 0.005711 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.199084 B = 4902.003879 C = 5670.802912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.300 6.300 3 C 0.270 3.730 4 C 0.064 3.936 5 N -0.407 5.407 6 C 0.063 3.937 7 C 0.103 3.897 8 C 0.511 3.489 9 O -0.500 6.500 10 O -0.328 6.328 11 C 0.212 3.788 12 H 0.049 0.951 13 C -0.155 4.155 14 C -0.521 4.521 15 H 0.070 0.930 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.913 3.087 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.271 1.271 22 N -0.447 5.447 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.100 0.900 26 H 0.183 0.817 27 H 0.189 0.811 28 H 0.038 0.962 29 H 0.101 0.899 30 H 0.017 0.983 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.190 -13.043 -1.286 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.205 6.205 3 C 0.084 3.916 4 C -0.101 4.101 5 N -0.120 5.120 6 C -0.094 4.094 7 C -0.035 4.035 8 C 0.352 3.648 9 O -0.389 6.389 10 O -0.243 6.243 11 C 0.160 3.840 12 H 0.067 0.933 13 C -0.213 4.213 14 C -0.559 4.559 15 H 0.088 0.912 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.740 3.260 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.196 1.196 22 N -0.179 5.179 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.200 0.800 27 H 0.205 0.795 28 H 0.057 0.943 29 H 0.120 0.880 30 H 0.036 0.964 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.279 -12.723 -1.303 15.236 hybrid contribution -1.213 0.170 0.390 1.285 sum 7.067 -12.553 -0.913 14.434 Atomic orbital electron populations 1.23028 0.76150 1.03354 1.03615 1.86245 1.23786 1.23052 1.87449 1.21049 0.90936 0.85725 0.93840 1.23232 0.89721 0.97816 0.99316 1.68646 1.37754 0.97575 1.08073 1.23660 0.90314 0.98793 0.96612 1.21309 0.92287 0.90608 0.99335 1.20385 0.83785 0.86517 0.74098 1.90820 1.73120 1.28842 1.46101 1.86665 1.15819 1.41518 1.80255 1.20799 0.90441 0.77702 0.95030 0.93294 1.22175 0.98950 1.03823 0.96336 1.20998 1.00783 0.97467 1.36608 0.91203 1.24881 0.98805 0.94682 0.95547 1.69890 1.37231 1.00832 1.44709 0.86252 0.82013 0.78233 0.79520 1.20371 1.20901 1.19587 1.68178 1.39534 0.97830 1.12356 0.91515 0.91587 0.88165 0.80047 0.79451 0.94292 0.88026 0.96429 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.39 101.05 1.05 1.41 16 2 O -0.30 -3.61 10.49 -18.71 -0.20 -3.80 16 3 C 0.27 3.67 7.50 -16.94 -0.13 3.54 16 4 C 0.06 0.74 11.18 -17.02 -0.19 0.55 16 5 N -0.41 -5.34 10.48 -12.57 -0.13 -5.47 16 6 C 0.06 0.92 10.76 -17.01 -0.18 0.74 16 7 C 0.10 1.80 6.75 -82.88 -0.56 1.24 16 8 C 0.51 10.92 7.93 34.75 0.28 11.19 16 9 O -0.50 -11.34 15.59 -19.22 -0.30 -11.64 16 10 O -0.33 -7.96 9.69 -40.45 -0.39 -8.35 16 11 C 0.21 5.67 2.56 -27.88 -0.07 5.60 16 12 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 13 C -0.16 -3.90 9.33 37.16 0.35 -3.55 16 14 C -0.52 -14.54 8.90 -34.44 -0.31 -14.85 16 15 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 18 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 N -0.45 -7.47 9.17 -9.70 -0.09 -7.56 16 23 H 0.07 0.79 8.11 -51.93 -0.42 0.36 16 24 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.19 2.45 7.64 -52.49 -0.40 2.05 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.10 2.71 6.07 -51.93 -0.32 2.40 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 283.89 15.07 4.28 4.28 Total: -1.00 -30.59 283.89 -4.25 -34.84 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -3.17 Total: -1.37 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 0.14 Total: 7.50 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.41 Total: -37.36 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.89 Total: -23.79 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.59 -4.25 -34.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791811777.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.196 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds