Wall clock time and date at job start Sun Mar 29 2020 23:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47682 * 2 1 4 4 C 1.50705 * 109.46621 * 119.99618 * 2 1 3 5 5 H 1.08006 * 119.99786 * 120.00384 * 4 2 1 6 6 C 1.37871 * 120.00164 * 299.99955 * 4 2 1 7 7 N 1.31515 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00151 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47191 * 89.99717 * 8 6 4 10 10 H 1.48495 * 109.47366 * 209.99784 * 8 6 4 11 11 H 1.48507 * 109.47277 * 330.00175 * 8 6 4 12 12 O 1.45193 * 109.47468 * 239.99393 * 2 1 3 13 13 C 1.34736 * 117.00069 * 90.00216 * 12 2 1 14 14 O 1.21489 * 119.99316 * 0.02562 * 13 12 2 15 15 C 1.47584 * 120.00255 * 180.02562 * 13 12 2 16 16 C 1.40994 * 125.98227 * 180.02562 * 15 13 12 17 17 C 1.36158 * 107.95147 * 179.97438 * 16 15 13 18 18 N 1.35814 * 107.32598 * 0.35443 * 17 16 15 19 19 N 1.31887 * 125.98042 * 0.07083 * 15 13 12 20 20 C 1.47427 * 108.06595 * 179.35271 * 18 17 16 21 21 C 1.54641 * 102.34602 * 344.65002 * 20 18 17 22 22 O 1.36120 * 140.86253 * 180.69582 * 17 16 15 23 23 H 1.09005 * 109.46970 * 300.00835 * 1 2 3 24 24 H 1.09007 * 109.46533 * 60.00237 * 1 2 3 25 25 H 1.08992 * 109.47240 * 180.02562 * 1 2 3 26 26 H 0.97003 * 120.00064 * 179.97438 * 7 6 4 27 27 H 1.07998 * 126.02185 * 359.94608 * 16 15 13 28 28 H 1.09001 * 110.82897 * 102.86981 * 20 18 17 29 29 H 1.09004 * 110.82740 * 226.43515 * 20 18 17 30 30 H 1.09008 * 110.85136 * 266.67674 * 21 20 18 31 31 H 1.09004 * 111.02412 * 143.13198 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6991 -0.2393 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3222 -1.1193 4.0081 9 1 3.6303 -0.5439 4.4120 10 1 1.3442 -0.9487 5.1123 11 1 2.4878 -2.5652 3.7124 12 8 2.0141 -0.6846 -1.1854 13 6 2.2180 0.0666 -2.2852 14 8 1.9979 1.2610 -2.2542 15 6 2.7089 -0.5614 -3.5272 16 6 2.9652 0.1010 -4.7452 17 6 3.4034 -0.8247 -5.6423 18 7 3.4134 -2.0270 -5.0106 19 7 2.9837 -1.8407 -3.6925 20 6 3.8711 -3.0455 -5.9732 21 6 3.7317 -2.3085 -7.3256 22 8 3.8276 -0.9273 -6.9316 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 0.7088 1.1616 3.4843 27 1 2.8362 1.1566 -4.9334 28 1 4.9098 -3.3175 -5.7852 29 1 3.2275 -3.9246 -5.9427 30 1 2.7638 -2.5154 -7.7823 31 1 4.5432 -2.5762 -8.0023 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810583769.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:44 Heat of formation + Delta-G solvation = -39.033520 kcal Electronic energy + Delta-G solvation = -17968.554777 eV Core-core repulsion = 14831.748569 eV Total energy + Delta-G solvation = -3136.806208 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.43393 -41.29575 -39.58108 -37.64386 -35.35751 -34.35819 -31.91136 -30.99985 -30.00687 -27.47133 -26.27536 -24.08565 -23.01610 -22.49502 -21.15316 -19.13482 -18.65448 -18.31269 -17.66576 -17.29599 -16.93450 -16.56650 -16.43118 -16.02883 -15.21851 -14.90995 -14.50129 -14.22756 -14.02920 -13.90840 -13.24752 -13.15010 -13.01402 -12.83557 -12.39439 -12.28242 -12.16781 -12.15117 -11.81957 -11.63970 -11.02165 -10.60752 -10.36647 -9.75698 -8.28723 -6.45593 -0.06649 0.71084 0.81544 1.40800 1.44825 1.49467 1.58727 1.95172 2.18085 2.42706 3.01599 3.03960 3.39301 3.80639 3.85759 4.07165 4.21288 4.39716 4.45562 4.52056 4.62076 4.70440 4.78596 4.79927 5.04137 5.13042 5.45298 5.58894 5.72539 5.83512 6.00465 6.22655 6.56752 6.82484 7.24930 8.79410 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.043719 B = 0.004549 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.299956 B = 6153.156649 C = 6554.566037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.214 3.786 3 H 0.016 0.984 4 C -0.551 4.551 5 H 0.065 0.935 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.985 3.015 9 H -0.271 1.271 10 H -0.272 1.272 11 H -0.265 1.265 12 O -0.347 6.347 13 C 0.539 3.461 14 O -0.524 6.524 15 C 0.053 3.947 16 C -0.229 4.229 17 C 0.247 3.753 18 N -0.406 5.406 19 N -0.217 5.217 20 C 0.083 3.917 21 C 0.042 3.958 22 O -0.283 6.283 23 H 0.086 0.914 24 H 0.027 0.973 25 H 0.045 0.955 26 H 0.273 0.727 27 H 0.173 0.827 28 H 0.128 0.872 29 H 0.138 0.862 30 H 0.114 0.886 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.872 -9.099 -20.384 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.161 3.839 3 H 0.034 0.966 4 C -0.588 4.588 5 H 0.083 0.917 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.808 3.192 9 H -0.196 1.196 10 H -0.197 1.197 11 H -0.189 1.189 12 O -0.263 6.263 13 C 0.382 3.618 14 O -0.412 6.412 15 C -0.110 4.110 16 C -0.258 4.258 17 C 0.078 3.922 18 N -0.205 5.205 19 N -0.049 5.049 20 C -0.035 4.035 21 C -0.032 4.032 22 O -0.190 6.190 23 H 0.105 0.895 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.190 0.810 28 H 0.146 0.854 29 H 0.156 0.844 30 H 0.132 0.868 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.833 -9.748 -19.801 22.828 hybrid contribution 0.017 0.742 0.609 0.960 sum 5.850 -9.006 -19.192 21.992 Atomic orbital electron populations 1.22002 0.96287 1.00551 1.01197 1.20561 0.92423 0.92426 0.78454 0.96594 1.21258 1.33667 1.14006 0.89869 0.91713 1.25811 0.94611 0.95673 1.01976 1.70006 1.36367 1.23512 1.25366 0.85157 0.78228 0.78799 0.77054 1.19641 1.19692 1.18919 1.86630 1.75679 1.42988 1.20960 1.19932 0.74187 0.84408 0.83305 1.90780 1.49557 1.16326 1.84548 1.20639 1.05389 0.91873 0.93120 1.20039 1.14957 1.01319 0.89521 1.20544 0.97271 0.89109 0.85309 1.51286 1.51247 1.10116 1.07856 1.77879 1.18480 1.16016 0.92533 1.23957 1.04595 0.91718 0.83253 1.24999 1.08610 0.74371 0.95222 1.87166 1.80224 1.31175 1.20404 0.89535 0.95436 0.93598 0.91814 0.80978 0.85380 0.84418 0.86805 0.80720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.65 9.33 71.98 0.67 -6.98 16 2 C 0.21 12.41 2.56 29.85 0.08 12.48 16 3 H 0.02 1.03 7.16 -2.39 -0.02 1.01 16 4 C -0.55 -32.60 8.90 25.60 0.23 -32.37 16 5 H 0.06 3.80 7.81 -2.91 -0.02 3.78 16 6 C 0.02 1.08 5.30 84.65 0.45 1.53 16 7 N -0.91 -53.29 11.32 21.45 0.24 -53.05 16 8 Si 0.98 43.88 29.54 68.60 2.03 45.91 16 9 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 12 O -0.35 -18.63 9.87 -56.46 -0.56 -19.19 16 13 C 0.54 26.17 7.94 70.29 0.56 26.72 16 14 O -0.52 -27.18 16.16 19.87 0.32 -26.86 16 15 C 0.05 2.11 7.11 42.28 0.30 2.41 16 16 C -0.23 -7.51 10.60 22.46 0.24 -7.27 16 17 C 0.25 6.47 8.32 83.59 0.70 7.17 16 18 N -0.41 -10.53 5.01 -453.35 -2.27 -12.80 16 19 N -0.22 -8.03 12.73 -48.56 -0.62 -8.65 16 20 C 0.08 0.87 8.10 86.76 0.70 1.57 16 21 C 0.04 0.25 8.08 72.54 0.59 0.84 16 22 O -0.28 -5.09 11.19 -94.91 -1.06 -6.15 16 23 H 0.09 4.89 6.07 -2.38 -0.01 4.87 16 24 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.04 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 27 H 0.17 5.22 8.06 -2.91 -0.02 5.20 16 28 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.14 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 31 H 0.18 -0.48 8.14 -2.39 -0.02 -0.50 16 Total: -1.00 -77.15 279.64 3.74 -73.41 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: 1.16 Total: 1.29 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 4.51 Total: 6.09 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -2.65 Total: -74.49 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -1.30 Total: -52.20 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -77.15 3.74 -73.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810583769.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.372 kcal (2) G-P(sol) polarization free energy of solvation -77.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds