Wall clock time and date at job start Sun Mar 29 2020 23:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86790 * 120.00374 * 2 1 4 4 H 1.48500 * 109.47533 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47499 * 300.00310 * 3 2 1 6 6 H 1.48503 * 109.47342 * 59.99972 * 3 2 1 7 7 C 1.37880 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99521 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00140 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47065 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99908 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46835 * 179.97438 * 11 10 9 13 13 O 1.45197 * 109.47297 * 64.99920 * 12 11 10 14 14 C 1.34706 * 117.00336 * 180.02562 * 13 12 11 15 15 O 1.21471 * 119.99769 * 359.97438 * 14 13 12 16 16 C 1.47708 * 120.00268 * 179.97438 * 14 13 12 17 17 C 1.40002 * 120.94256 * 179.97438 * 16 14 13 18 18 N 1.32139 * 118.91557 * 179.72514 * 17 16 14 19 19 C 1.31874 * 120.97544 * 0.25490 * 18 17 16 20 20 N 1.31874 * 122.10475 * 0.02562 * 19 18 17 21 21 C 1.32133 * 120.97620 * 359.97438 * 20 19 18 22 22 H 0.97003 * 119.99471 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47488 * 59.99818 * 9 7 2 24 24 H 1.09001 * 109.47009 * 299.99818 * 9 7 2 25 25 H 1.08992 * 109.47315 * 59.99688 * 11 10 9 26 26 H 1.08998 * 109.46712 * 299.99404 * 11 10 9 27 27 H 1.08997 * 109.47132 * 304.99717 * 12 11 10 28 28 H 1.09001 * 109.46834 * 184.99888 * 12 11 10 29 29 H 1.08002 * 120.54525 * 0.02562 * 17 16 14 30 30 H 1.07992 * 118.94867 * 180.02562 * 19 18 17 31 31 H 1.08005 * 120.54900 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 2.1794 -3.5854 -0.0015 11 6 1.5648 -4.8755 -0.0031 12 6 2.6477 -5.9563 -0.0033 13 8 3.3981 -5.8899 1.2379 14 6 4.3963 -6.7803 1.3976 15 8 4.6331 -7.5903 0.5239 16 6 5.2029 -6.7716 2.6349 17 6 6.2445 -7.6882 2.8217 18 7 6.9440 -7.6411 3.9418 19 6 6.6697 -6.7520 4.8763 20 7 5.6944 -5.8743 4.7440 21 6 4.9443 -5.8499 3.6565 22 1 -0.4849 0.8401 -0.0004 23 1 0.6245 -2.5563 -0.8919 24 1 0.6239 -2.5575 0.8880 25 1 0.9456 -4.9818 -0.8937 26 1 0.9437 -4.9831 0.8862 27 1 3.3218 -5.7950 -0.8445 28 1 2.1817 -6.9375 -0.0941 29 1 6.4758 -8.4189 2.0606 30 1 7.2626 -6.7424 5.7788 31 1 4.1471 -5.1282 3.5556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815235449.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:30 Heat of formation + Delta-G solvation = -84.480681 kcal Electronic energy + Delta-G solvation = -17362.740947 eV Core-core repulsion = 14223.964002 eV Total energy + Delta-G solvation = -3138.776945 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.48859 -40.09396 -37.18281 -36.16773 -34.14794 -32.90374 -32.69368 -30.15120 -27.04982 -25.84001 -24.87820 -22.73186 -22.31836 -21.36955 -18.51098 -18.04064 -17.41297 -16.77914 -16.68064 -16.35018 -15.52263 -14.96977 -14.68723 -14.39490 -14.06684 -13.98140 -13.76935 -13.05152 -12.83686 -12.07451 -11.91038 -11.51363 -11.24198 -11.02013 -10.92021 -10.80613 -10.58665 -10.50350 -10.14213 -10.09316 -9.65345 -9.16158 -8.93685 -8.26776 -6.15877 -4.17682 0.00590 0.68654 2.30152 2.45965 3.26776 3.33573 3.39863 3.44094 3.72064 3.77650 4.12557 4.28313 4.40163 4.62098 4.68962 4.99378 5.10889 5.21135 5.36104 5.44133 5.77114 5.84038 5.90783 5.96753 6.31759 6.50314 6.99756 7.34505 7.55240 7.62438 7.74248 8.07706 8.46231 8.94952 9.47489 10.95692 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.023933 B = 0.004339 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.659802 B = 6451.207050 C = 7292.135470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.076 3.924 13 O -0.335 6.335 14 C 0.519 3.481 15 O -0.506 6.506 16 C -0.231 4.231 17 C 0.213 3.787 18 N -0.527 5.527 19 C 0.320 3.680 20 N -0.524 5.524 21 C 0.213 3.787 22 H 0.264 0.736 23 H 0.007 0.993 24 H 0.008 0.992 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.183 0.817 30 H 0.204 0.796 31 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.372 -14.746 6.376 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.003 3.997 13 O -0.250 6.250 14 C 0.362 3.638 15 O -0.395 6.395 16 C -0.236 4.236 17 C 0.046 3.954 18 N -0.240 5.240 19 C 0.034 3.966 20 N -0.237 5.237 21 C 0.047 3.953 22 H 0.074 0.926 23 H 0.024 0.976 24 H 0.026 0.974 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.200 0.800 30 H 0.220 0.780 31 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 9.006 -14.794 6.946 18.661 hybrid contribution -0.541 0.828 -0.928 1.356 sum 8.465 -13.966 6.018 17.405 Atomic orbital electron populations 1.69968 1.06115 1.27147 1.50504 1.24943 0.94978 0.99465 0.95046 0.86281 0.80033 0.82522 0.77672 1.19471 1.20819 1.20767 1.21079 0.94129 0.89263 1.50907 0.91462 1.20252 0.88726 0.83447 0.95570 1.87918 1.35370 1.12603 1.95249 1.22340 0.93146 0.85439 1.00792 1.23319 0.93621 0.99124 0.83628 1.86612 1.42948 1.53322 1.42122 1.20543 0.78924 0.78546 0.85794 1.90838 1.68027 1.38074 1.42607 1.21041 1.02079 1.03676 0.96831 1.23532 0.85876 0.92574 0.93376 1.68626 1.28688 1.24320 1.02395 1.25390 0.90157 0.84343 0.96733 1.68616 1.06885 1.23987 1.24242 1.23938 0.93741 0.92061 0.85547 0.92645 0.97566 0.97424 0.91683 0.93043 0.90129 0.90063 0.80035 0.77981 0.79306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.93 9.43 -34.44 -0.32 -15.26 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.19 5.16 5.69 36.01 0.20 5.37 16 10 O -0.39 -9.09 10.30 -38.80 -0.40 -9.49 16 11 C 0.06 1.03 6.33 37.16 0.24 1.27 16 12 C 0.08 1.11 5.85 37.16 0.22 1.33 16 13 O -0.33 -5.06 9.54 -43.29 -0.41 -5.47 16 14 C 0.52 7.15 7.91 34.60 0.27 7.43 16 15 O -0.51 -7.66 16.23 -19.24 -0.31 -7.97 16 16 C -0.23 -2.70 5.91 -104.71 -0.62 -3.32 16 17 C 0.21 2.21 10.88 -16.76 -0.18 2.03 16 18 N -0.53 -5.42 10.42 -14.23 -0.15 -5.57 16 19 C 0.32 2.99 12.27 -92.02 -1.13 1.87 16 20 N -0.52 -5.89 10.42 -14.23 -0.15 -6.03 16 21 C 0.21 2.45 10.90 -16.76 -0.18 2.27 16 22 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.18 1.58 7.74 -52.49 -0.41 1.17 16 30 H 0.20 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.19 2.07 7.71 -52.48 -0.40 1.67 16 LS Contribution 290.18 15.07 4.37 4.37 Total: -1.00 -32.97 290.18 -6.25 -39.22 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: -3.31 Total: -4.44 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -1.60 Total: 4.50 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.44 Total: -37.29 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -1.13 Total: -22.93 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.97 -6.25 -39.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815235449.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.258 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds