Wall clock time and date at job start Sun Mar 29 2020 23:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86790 * 120.00374 * 2 1 4 4 H 1.48500 * 109.47533 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47499 * 300.00310 * 3 2 1 6 6 H 1.48503 * 109.47342 * 59.99972 * 3 2 1 7 7 C 1.37880 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99521 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00140 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47065 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99908 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46835 * 179.97438 * 11 10 9 13 13 O 1.45197 * 109.47297 * 64.99920 * 12 11 10 14 14 C 1.34706 * 117.00336 * 180.02562 * 13 12 11 15 15 O 1.21471 * 119.99769 * 359.97438 * 14 13 12 16 16 C 1.47708 * 120.00268 * 179.97438 * 14 13 12 17 17 C 1.40002 * 120.94256 * 179.97438 * 16 14 13 18 18 N 1.32139 * 118.91557 * 179.72514 * 17 16 14 19 19 C 1.31874 * 120.97544 * 0.25490 * 18 17 16 20 20 N 1.31874 * 122.10475 * 0.02562 * 19 18 17 21 21 C 1.32133 * 120.97620 * 359.97438 * 20 19 18 22 22 H 0.97003 * 119.99471 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47488 * 59.99818 * 9 7 2 24 24 H 1.09001 * 109.47009 * 299.99818 * 9 7 2 25 25 H 1.08992 * 109.47315 * 59.99688 * 11 10 9 26 26 H 1.08998 * 109.46712 * 299.99404 * 11 10 9 27 27 H 1.08997 * 109.47132 * 304.99717 * 12 11 10 28 28 H 1.09001 * 109.46834 * 184.99888 * 12 11 10 29 29 H 1.08002 * 120.54525 * 0.02562 * 17 16 14 30 30 H 1.07992 * 118.94867 * 180.02562 * 19 18 17 31 31 H 1.08005 * 120.54900 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 2.1794 -3.5854 -0.0015 11 6 1.5648 -4.8755 -0.0031 12 6 2.6477 -5.9563 -0.0033 13 8 3.3981 -5.8899 1.2379 14 6 4.3963 -6.7803 1.3976 15 8 4.6331 -7.5903 0.5239 16 6 5.2029 -6.7716 2.6349 17 6 6.2445 -7.6882 2.8217 18 7 6.9440 -7.6411 3.9418 19 6 6.6697 -6.7520 4.8763 20 7 5.6944 -5.8743 4.7440 21 6 4.9443 -5.8499 3.6565 22 1 -0.4849 0.8401 -0.0004 23 1 0.6245 -2.5563 -0.8919 24 1 0.6239 -2.5575 0.8880 25 1 0.9456 -4.9818 -0.8937 26 1 0.9437 -4.9831 0.8862 27 1 3.3218 -5.7950 -0.8445 28 1 2.1817 -6.9375 -0.0941 29 1 6.4758 -8.4189 2.0606 30 1 7.2626 -6.7424 5.7788 31 1 4.1471 -5.1282 3.5556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815235449.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:30 Heat of formation + Delta-G solvation = -105.850334 kcal Electronic energy + Delta-G solvation = -17363.667605 eV Core-core repulsion = 14223.964002 eV Total energy + Delta-G solvation = -3139.703603 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.37303 -41.16010 -38.75219 -37.51783 -35.00506 -34.92092 -33.68203 -31.58586 -29.05285 -26.79338 -25.72639 -24.57244 -23.80712 -22.48465 -19.50970 -18.90682 -18.65782 -18.25672 -17.96832 -17.75552 -17.10501 -16.42348 -16.24445 -15.79674 -15.37370 -14.81566 -14.78072 -14.45648 -14.24173 -13.75891 -13.26623 -12.90900 -12.88538 -12.72494 -12.45256 -12.07336 -12.02363 -11.78710 -11.64300 -11.26357 -11.01655 -10.89781 -10.48304 -10.26448 -8.32512 -6.44156 -0.85285 -0.15666 1.28006 1.40879 1.41020 1.41563 1.56195 2.34515 2.60385 2.95526 3.01396 3.01966 3.06636 3.27125 3.45973 3.72799 3.91678 4.12209 4.28829 4.42290 4.51727 4.61880 4.67058 4.86823 5.12598 5.17288 5.21728 5.54870 5.65827 5.95627 6.45678 6.52031 6.80243 6.81086 7.27668 8.79822 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.023933 B = 0.004339 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.659802 B = 6451.207050 C = 7292.135470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.052 3.948 12 C 0.080 3.920 13 O -0.349 6.349 14 C 0.524 3.476 15 O -0.522 6.522 16 C -0.243 4.243 17 C 0.220 3.780 18 N -0.533 5.533 19 C 0.326 3.674 20 N -0.540 5.540 21 C 0.212 3.788 22 H 0.271 0.729 23 H -0.008 1.008 24 H -0.009 1.009 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.198 0.802 30 H 0.240 0.760 31 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.457 -14.857 6.920 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.189 4.189 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.587 4.587 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.025 4.025 12 C 0.007 3.993 13 O -0.265 6.265 14 C 0.368 3.632 15 O -0.413 6.413 16 C -0.249 4.249 17 C 0.054 3.946 18 N -0.247 5.247 19 C 0.041 3.959 20 N -0.254 5.254 21 C 0.045 3.955 22 H 0.080 0.920 23 H 0.010 0.990 24 H 0.009 0.991 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.133 0.867 29 H 0.214 0.786 30 H 0.256 0.744 31 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 10.092 -14.929 7.497 19.517 hybrid contribution -0.873 0.760 -1.051 1.563 sum 9.220 -14.169 6.446 18.092 Atomic orbital electron populations 1.70060 1.07632 1.28590 1.50519 1.25892 0.95923 1.03189 0.93933 0.85183 0.78631 0.77585 0.78305 1.19048 1.19671 1.19627 1.21415 0.94064 0.90974 1.52214 0.92232 1.19867 0.88536 0.84317 0.93977 1.87860 1.35513 1.14218 1.95355 1.22678 0.94489 0.83247 1.02079 1.23303 0.93063 0.99526 0.83412 1.86601 1.43580 1.54063 1.42293 1.20779 0.78431 0.77814 0.86176 1.90823 1.68454 1.38657 1.43330 1.20933 1.02836 1.04860 0.96230 1.23800 0.84992 0.92111 0.93701 1.68742 1.28698 1.24700 1.02516 1.26151 0.89352 0.82964 0.97406 1.68683 1.07653 1.24929 1.24140 1.23953 0.93806 0.91938 0.85760 0.92014 0.98995 0.99087 0.89839 0.92282 0.90572 0.86746 0.78565 0.74368 0.79554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 13.29 21.45 0.28 -54.54 16 2 C 0.01 0.53 5.46 84.66 0.46 0.99 16 3 Si 0.98 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -32.27 9.43 25.60 0.24 -32.03 16 8 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 9 C 0.21 11.33 5.69 71.24 0.41 11.73 16 10 O -0.41 -19.28 10.30 -145.57 -1.50 -20.78 16 11 C 0.05 1.75 6.33 71.98 0.46 2.20 16 12 C 0.08 2.25 5.85 71.98 0.42 2.67 16 13 O -0.35 -10.45 9.54 -53.50 -0.51 -10.96 16 14 C 0.52 14.13 7.91 70.32 0.56 14.69 16 15 O -0.52 -15.33 16.23 19.93 0.32 -15.01 16 16 C -0.24 -5.51 5.91 -19.92 -0.12 -5.63 16 17 C 0.22 4.28 10.88 85.07 0.93 5.20 16 18 N -0.53 -9.93 10.42 -198.94 -2.07 -12.00 16 19 C 0.33 5.42 12.27 180.84 2.22 7.64 16 20 N -0.54 -11.46 10.42 -198.94 -2.07 -13.54 16 21 C 0.21 4.77 10.90 85.08 0.93 5.69 16 22 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 23 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 24 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 25 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.20 3.11 7.74 -2.91 -0.02 3.08 16 30 H 0.24 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.19 4.16 7.71 -2.91 -0.02 4.14 16 Total: -1.00 -69.98 290.18 4.12 -65.86 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: 1.14 Total: 1.85 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 6.50 Total: 13.17 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -3.86 Total: -80.08 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -1.69 Total: -46.74 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -69.98 4.12 -65.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815235449.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.986 kcal (2) G-P(sol) polarization free energy of solvation -69.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds