Wall clock time and date at job start Sun Mar 29 2020 23:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34702 * 125.90416 * 2 1 4 4 H 0.97001 * 124.81852 * 0.04515 * 3 2 1 5 5 C 1.36424 * 110.36564 * 180.27926 * 3 2 1 6 6 C 1.34447 * 109.08619 * 359.75914 * 5 3 2 7 7 C 1.37845 * 125.90168 * 179.87644 * 2 1 3 8 8 C 1.47181 * 127.01548 * 359.97438 * 7 2 1 9 9 O 1.21658 * 120.00020 * 34.61319 * 8 7 2 10 10 N 1.34781 * 119.99748 * 214.61033 * 8 7 2 11 11 C 1.36983 * 119.99529 * 173.91630 * 10 8 7 12 12 H 1.08001 * 119.99769 * 144.98669 * 11 10 8 13 13 C 1.38966 * 120.00350 * 325.25837 * 11 10 8 14 14 N 1.31423 * 119.99922 * 338.07095 * 13 11 10 15 15 Si 1.86792 * 120.00301 * 158.06767 * 13 11 10 16 16 H 1.48503 * 109.47223 * 90.00115 * 15 13 11 17 17 H 1.48496 * 109.47560 * 210.00134 * 15 13 11 18 18 H 1.48500 * 109.46925 * 330.00060 * 15 13 11 19 19 C 1.46491 * 120.00333 * 353.91897 * 10 8 7 20 20 C 1.50706 * 109.47032 * 266.52320 * 19 10 8 21 21 O 1.20825 * 119.99836 * 0.02562 * 20 19 10 22 22 O 1.34225 * 120.00114 * 179.97438 * 20 19 10 23 23 H 1.09003 * 109.47183 * 270.12472 * 1 2 3 24 24 H 1.09000 * 109.46814 * 30.12425 * 1 2 3 25 25 H 1.08996 * 109.47119 * 150.12289 * 1 2 3 26 26 H 1.08004 * 125.45528 * 179.76683 * 5 3 2 27 27 H 1.08001 * 126.80817 * 180.02562 * 6 5 3 28 28 H 0.96998 * 119.99875 * 185.05851 * 14 13 11 29 29 H 1.09007 * 109.47198 * 26.52162 * 19 10 8 30 30 H 1.08995 * 109.47699 * 146.52577 * 19 10 8 31 31 H 0.96698 * 117.00066 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2969 1.0911 0.0000 4 1 1.9767 2.0067 0.0006 5 6 3.6113 0.7256 -0.0062 6 6 3.6945 -0.6163 -0.0051 7 6 2.3153 -1.1166 0.0024 8 6 1.8830 -2.5234 0.0060 9 8 0.8752 -2.8516 -0.5913 10 7 2.6036 -3.4482 0.6709 11 6 2.1372 -4.7316 0.7796 12 1 2.8296 -5.5604 0.7686 13 6 0.7729 -4.9675 0.8982 14 7 -0.0231 -4.0163 1.3328 15 14 0.0702 -6.6365 0.4399 16 1 0.0747 -7.5201 1.6334 17 1 -1.3225 -6.4703 -0.0477 18 1 0.9000 -7.2459 -0.6303 19 6 3.8854 -3.0808 1.2776 20 6 5.0025 -3.3800 0.3113 21 8 4.7534 -3.8513 -0.7730 22 8 6.2741 -3.1219 0.6548 23 1 -0.3634 0.0022 1.0277 24 1 -0.3633 0.8889 -0.5158 25 1 -0.3633 -0.8910 -0.5119 26 1 4.4505 1.4054 -0.0112 27 1 4.5976 -1.2086 -0.0085 28 1 -0.9627 -4.2023 1.4855 29 1 3.8841 -2.0165 1.5132 30 1 4.0326 -3.6552 2.1921 31 1 6.9562 -3.3303 0.0018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832847398.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:32 Heat of formation + Delta-G solvation = -81.644672 kcal Electronic energy + Delta-G solvation = -19177.721630 eV Core-core repulsion = 16039.067663 eV Total energy + Delta-G solvation = -3138.653966 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.05150 -41.08974 -39.45690 -36.97617 -35.87706 -34.03709 -32.32592 -31.68851 -29.25933 -27.58234 -26.26094 -23.49385 -22.39524 -21.70293 -20.06386 -19.00002 -18.60890 -18.05193 -17.27518 -17.02530 -16.85285 -16.08442 -15.81131 -15.43450 -14.68452 -14.49509 -14.35015 -13.91821 -13.55431 -13.41726 -13.37145 -13.27971 -12.79805 -12.76600 -12.65859 -12.38177 -12.33692 -12.12794 -11.63596 -10.90400 -10.06633 -9.54446 -9.15636 -8.90994 -8.19965 -5.87064 1.13937 1.32335 1.36795 1.45781 1.53198 1.68119 2.13648 2.33910 2.48118 2.93945 3.28418 3.45652 4.08583 4.25329 4.36804 4.41490 4.43966 4.58159 4.68036 4.77147 4.80250 5.10959 5.13191 5.38069 5.48665 5.70755 5.90172 6.08781 6.25827 6.84985 7.02542 7.13234 7.26412 7.68715 8.42937 8.90575 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.018462 B = 0.010917 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.233204 B = 2564.205784 C = 3826.494527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.069 3.931 3 N -0.533 5.533 4 H 0.433 0.567 5 C 0.014 3.986 6 C -0.214 4.214 7 C -0.246 4.246 8 C 0.536 3.464 9 O -0.581 6.581 10 N -0.451 5.451 11 C -0.366 4.366 12 H 0.072 0.928 13 C 0.023 3.977 14 N -0.851 5.851 15 Si 0.971 3.029 16 H -0.258 1.258 17 H -0.289 1.289 18 H -0.280 1.280 19 C 0.105 3.895 20 C 0.466 3.534 21 O -0.545 6.545 22 O -0.504 6.504 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.056 0.944 26 H 0.218 0.782 27 H 0.134 0.866 28 H 0.261 0.739 29 H 0.136 0.864 30 H 0.118 0.882 31 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.051 12.189 1.963 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 N -0.131 5.131 4 H 0.273 0.727 5 C -0.115 4.115 6 C -0.238 4.238 7 C -0.256 4.256 8 C 0.327 3.673 9 O -0.463 6.463 10 N -0.171 5.171 11 C -0.493 4.493 12 H 0.089 0.911 13 C -0.184 4.184 14 N -0.486 5.486 15 Si 0.796 3.204 16 H -0.183 1.183 17 H -0.215 1.215 18 H -0.205 1.205 19 C -0.021 4.021 20 C 0.308 3.692 21 O -0.435 6.435 22 O -0.317 6.317 23 H 0.089 0.911 24 H 0.114 0.886 25 H 0.075 0.925 26 H 0.234 0.766 27 H 0.152 0.848 28 H 0.070 0.930 29 H 0.153 0.847 30 H 0.136 0.864 31 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 7.954 12.180 1.652 14.640 hybrid contribution -0.135 -1.066 -0.781 1.328 sum 7.819 11.114 0.870 13.617 Atomic orbital electron populations 1.20307 0.87262 1.03411 1.02811 1.20506 0.93885 0.86061 1.04404 1.41380 1.05662 1.08166 1.57853 0.72668 1.22208 0.86553 0.95426 1.07340 1.22159 0.94379 0.95239 1.12072 1.20867 0.95078 0.92282 1.17326 1.17665 0.84547 0.85075 0.80001 1.90499 1.28203 1.81884 1.45696 1.42991 1.16802 1.09599 1.47745 1.19159 0.92061 0.83174 1.54948 0.91052 1.25835 0.96747 1.01077 0.94786 1.69968 1.05315 1.34672 1.38634 0.85315 0.77084 0.79155 0.78892 1.18275 1.21466 1.20497 1.21403 0.81489 1.05155 0.94048 1.24608 0.84164 0.73179 0.87230 1.90716 1.84870 1.42151 1.25747 1.84508 1.16713 1.79172 1.51342 0.91103 0.88612 0.92463 0.76591 0.84835 0.92970 0.84716 0.86403 0.71687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.83 10.22 71.24 0.73 -2.10 16 2 C 0.07 2.52 7.22 42.03 0.30 2.83 16 3 N -0.53 -13.05 5.90 -181.96 -1.07 -14.12 16 4 H 0.43 6.45 8.96 -92.71 -0.83 5.62 16 5 C 0.01 0.33 11.87 83.11 0.99 1.31 16 6 C -0.21 -7.38 8.56 23.62 0.20 -7.18 16 7 C -0.25 -11.03 5.63 -18.81 -0.11 -11.14 16 8 C 0.54 30.58 6.68 86.59 0.58 31.16 16 9 O -0.58 -37.97 12.80 -4.21 -0.05 -38.02 16 10 N -0.45 -24.75 2.07 -643.56 -1.33 -26.09 16 11 C -0.37 -21.90 9.27 84.06 0.78 -21.12 16 12 H 0.07 4.19 7.92 -2.91 -0.02 4.17 16 13 C 0.02 1.37 4.28 84.93 0.36 1.73 16 14 N -0.85 -52.67 11.30 21.67 0.24 -52.42 16 15 Si 0.97 48.22 29.61 68.60 2.03 50.26 16 16 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 18 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 19 C 0.11 4.37 5.51 85.64 0.47 4.85 16 20 C 0.47 17.91 6.23 71.24 0.44 18.35 16 21 O -0.55 -26.30 17.14 21.97 0.38 -25.92 16 22 O -0.50 -13.20 13.42 -51.37 -0.69 -13.89 16 23 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.06 2.59 6.58 -2.39 -0.02 2.58 16 26 H 0.22 2.79 8.06 -2.91 -0.02 2.76 16 27 H 0.13 4.45 4.98 -2.91 -0.01 4.44 16 28 H 0.26 15.40 8.32 -92.71 -0.77 14.63 16 29 H 0.14 5.02 4.86 -2.38 -0.01 5.01 16 30 H 0.12 4.49 8.07 -2.39 -0.02 4.47 16 31 H 0.42 7.10 9.10 -74.06 -0.67 6.43 16 Total: -1.00 -88.50 272.17 3.95 -84.55 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -0.30 Total: 16.97 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 4.75 Total: 18.69 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -2.16 Total: -92.63 kcal Atomic # 8 Polarization: -77.46 SS G_CDS: -0.37 Total: -77.83 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.26 kcal Total: -88.50 3.95 -84.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832847398.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.904 kcal (2) G-P(sol) polarization free energy of solvation -88.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds