Wall clock time and date at job start Sun Mar 29 2020 23:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47054 * 179.97438 * 9 7 2 11 11 C 1.81398 * 103.00088 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47199 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47006 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47103 * 55.00281 * 13 12 11 15 15 O 1.42902 * 109.47406 * 295.00226 * 13 12 11 16 16 C 1.50694 * 109.46951 * 174.99848 * 13 12 11 17 17 C 1.38237 * 119.99850 * 84.73176 * 16 13 12 18 18 C 1.38234 * 120.00300 * 179.78812 * 17 16 13 19 19 C 1.38241 * 119.99726 * 0.43603 * 18 17 16 20 20 C 1.38230 * 119.99789 * 359.81513 * 19 18 17 21 21 C 1.38233 * 120.00518 * 264.99901 * 16 13 12 22 22 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 24 24 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 25 25 H 1.09002 * 109.46881 * 299.99990 * 11 10 9 26 26 H 1.09000 * 109.46946 * 60.00038 * 11 10 9 27 27 H 1.08998 * 109.46864 * 299.99844 * 12 11 10 28 28 H 1.09000 * 109.46988 * 60.00250 * 12 11 10 29 29 H 0.96695 * 113.99983 * 300.00178 * 15 13 12 30 30 H 1.08007 * 120.00061 * 359.97438 * 17 16 13 31 31 H 1.08002 * 120.00471 * 180.27494 * 18 17 16 32 32 H 1.07998 * 119.99793 * 179.83113 * 19 18 17 33 33 H 1.08004 * 120.00171 * 179.97438 * 20 19 18 34 34 H 1.08004 * 119.99835 * 359.97438 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3517 -5.3367 0.0013 12 6 2.2086 -6.6043 0.0008 13 6 1.2992 -7.8346 0.0021 14 1 0.6084 -7.7767 -0.8391 15 8 0.5594 -7.8789 1.2239 16 6 2.1387 -9.0799 -0.1224 17 6 2.6995 -9.6508 1.0048 18 6 3.4660 -10.7956 0.8913 19 6 3.6791 -11.3643 -0.3505 20 6 3.1226 -10.7905 -1.4782 21 6 2.3526 -9.6481 -1.3642 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 0.7229 -5.3231 0.8915 26 1 0.7223 -5.3237 -0.8885 27 1 2.8371 -6.6175 -0.8897 28 1 2.8384 -6.6175 0.8903 29 1 1.1113 -7.9312 2.0162 30 1 2.5364 -9.2041 1.9746 31 1 3.9005 -11.2442 1.7724 32 1 4.2802 -12.2572 -0.4395 33 1 3.2894 -11.2345 -2.4485 34 1 1.9176 -9.1999 -2.2453 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840210929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:36 Heat of formation + Delta-G solvation = -67.142264 kcal Electronic energy + Delta-G solvation = -15216.631383 eV Core-core repulsion = 12624.899502 eV Total energy + Delta-G solvation = -2591.731880 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 252.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.60434 -38.12322 -35.30808 -34.00958 -32.01061 -31.72611 -30.69335 -27.16525 -25.27273 -23.56874 -23.22579 -21.89814 -18.73235 -18.46177 -17.25522 -17.00870 -16.86973 -16.52061 -15.87739 -15.65202 -15.02890 -14.67728 -14.53840 -14.24442 -14.10547 -14.04713 -13.98050 -13.28468 -12.74614 -12.66481 -12.54659 -12.23334 -12.16636 -11.95249 -11.80892 -11.65127 -10.95601 -10.75526 -10.72192 -9.82123 -9.64796 -8.50054 -8.34434 -6.48510 0.38550 0.50088 1.02241 1.39524 1.42939 1.52003 2.02035 2.36135 2.84426 2.99791 3.47060 3.55171 3.86437 4.01801 4.07901 4.15406 4.22138 4.32225 4.43127 4.59797 4.65156 4.69977 4.91465 4.92235 4.99549 5.04871 5.08625 5.16790 5.55234 5.55973 5.62286 5.65452 5.86876 6.10457 6.58943 6.71859 7.19752 8.77613 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.053591 B = 0.003382 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.350706 B = 8277.089767 C = 8426.932822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.094 3.906 10 S -0.322 6.322 11 C -0.070 4.070 12 C -0.112 4.112 13 C 0.160 3.840 14 H 0.108 0.892 15 O -0.567 6.567 16 C -0.125 4.125 17 C -0.124 4.124 18 C -0.126 4.126 19 C -0.128 4.128 20 C -0.127 4.127 21 C -0.125 4.125 22 H 0.271 0.729 23 H 0.012 0.988 24 H 0.012 0.988 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.386 0.614 30 H 0.134 0.866 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.729 -22.200 -0.013 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.081 0.919 9 C -0.053 4.053 10 S -0.094 6.094 11 C -0.218 4.218 12 C -0.151 4.151 13 C 0.100 3.900 14 H 0.125 0.875 15 O -0.375 6.375 16 C -0.126 4.126 17 C -0.142 4.142 18 C -0.144 4.144 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.143 4.143 22 H 0.080 0.920 23 H 0.031 0.969 24 H 0.030 0.970 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.236 0.764 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.167 -22.006 -0.415 22.858 hybrid contribution -0.816 0.975 0.297 1.306 sum 5.351 -21.031 -0.118 21.701 Atomic orbital electron populations 1.70061 1.07779 1.28711 1.49990 1.25965 0.95908 1.03206 0.93694 0.85295 0.78186 0.76975 0.79398 1.19013 1.20030 1.19003 1.20994 0.93466 0.90243 1.53065 0.91896 1.20706 0.94011 0.92885 0.97721 1.86343 1.21789 1.03255 1.98060 1.23241 0.99906 0.94122 1.04577 1.21938 0.97673 0.91142 1.04300 1.20737 0.91833 0.89283 0.88193 0.87454 1.86601 1.38014 1.96603 1.16233 1.20565 0.99640 0.97597 0.94796 1.21162 0.97661 0.96852 0.98530 1.21446 0.98415 0.95796 0.98720 1.21532 0.99782 1.00695 0.92593 1.21453 0.97298 0.95799 0.99907 1.21256 0.99367 0.96623 0.97085 0.92018 0.96948 0.96976 0.90495 0.90799 0.90067 0.90358 0.76405 0.84833 0.83994 0.83908 0.84074 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 2 C 0.01 0.74 5.46 84.65 0.46 1.20 16 3 Si 0.98 44.20 29.54 68.60 2.03 46.23 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -31.61 9.13 25.60 0.23 -31.37 16 8 H 0.06 3.65 7.71 -2.91 -0.02 3.63 16 9 C 0.09 5.20 5.70 71.24 0.41 5.60 16 10 S -0.32 -14.36 21.66 -56.49 -1.22 -15.58 16 11 C -0.07 -2.38 5.84 71.98 0.42 -1.96 16 12 C -0.11 -2.89 4.88 30.60 0.15 -2.74 16 13 C 0.16 3.56 3.21 29.85 0.10 3.66 16 14 H 0.11 2.38 8.05 -2.39 -0.02 2.36 16 15 O -0.57 -13.18 12.67 -148.98 -1.89 -15.07 16 16 C -0.13 -2.54 5.00 -19.87 -0.10 -2.63 16 17 C -0.12 -2.22 9.33 22.27 0.21 -2.01 16 18 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 19 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 20 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 21 C -0.13 -2.35 9.68 22.27 0.22 -2.14 16 22 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 23 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.08 2.67 7.82 -2.39 -0.02 2.65 16 26 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.39 6.46 7.40 -74.06 -0.55 5.91 16 30 H 0.13 1.90 6.62 -2.91 -0.02 1.88 16 31 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -67.51 305.70 2.49 -65.02 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.53 Total: 12.35 kcal Atomic # 6 Polarization: -40.39 SS G_CDS: 2.76 Total: -37.63 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.28 Total: -55.32 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.89 Total: -15.07 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -14.36 SS G_CDS: -1.22 Total: -15.58 kcal Total: -67.51 2.49 -65.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840210929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.125 kcal (2) G-P(sol) polarization free energy of solvation -67.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds