Wall clock time and date at job start Sun Mar 29 2020 23:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00151 * 2 1 4 4 H 1.48501 * 109.46977 * 270.00267 * 3 2 1 5 5 H 1.48501 * 109.46725 * 30.00343 * 3 2 1 6 6 H 1.48498 * 109.47057 * 150.00391 * 3 2 1 7 7 C 1.37880 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99846 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00095 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47371 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00248 * 180.02562 * 10 9 7 12 12 O 1.21591 * 119.99897 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00273 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00136 * 180.02562 * 13 11 10 15 15 H 1.08995 * 115.56335 * 9.30168 * 14 13 11 16 16 C 1.53004 * 117.49360 * 223.61920 * 14 13 11 17 17 C 1.52997 * 117.50042 * 154.99807 * 14 13 11 18 18 H 1.09005 * 117.49905 * 359.96944 * 17 14 13 19 19 C 1.52997 * 117.49949 * 214.97518 * 17 14 13 20 20 F 1.39905 * 109.47157 * 59.99639 * 19 17 14 21 21 F 1.39900 * 109.47010 * 300.00030 * 19 17 14 22 22 F 1.39897 * 109.47422 * 179.97438 * 19 17 14 23 23 H 0.96998 * 120.00266 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46792 * 60.00448 * 9 7 2 25 25 H 1.08996 * 109.47316 * 300.00327 * 9 7 2 26 26 H 0.97000 * 119.99575 * 0.02562 * 10 9 7 27 27 H 0.97000 * 119.99550 * 359.97438 * 13 11 10 28 28 H 1.08997 * 117.49770 * 145.01708 * 16 14 13 29 29 H 1.08999 * 117.49991 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5584 -5.1055 -0.0011 13 7 2.6297 -5.9078 -0.0005 14 6 2.1413 -7.2890 -0.0017 15 1 1.0699 -7.4089 -0.1618 16 6 2.8312 -8.2829 0.9350 17 6 3.0661 -8.3648 -0.5747 18 1 4.0376 -8.0448 -0.9513 19 6 2.4161 -9.5266 -1.3288 20 9 1.7027 -9.0300 -2.4250 21 9 1.5427 -10.2071 -0.4736 22 9 3.4084 -10.4046 -1.7776 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 3.1567 -3.4354 -0.0002 27 1 3.5833 -5.7305 -0.0002 28 1 2.2136 -9.0566 1.3909 29 1 3.6486 -7.9092 1.5516 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875540979.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:58 Heat of formation + Delta-G solvation = -163.946172 kcal Electronic energy + Delta-G solvation = -18069.931885 eV Core-core repulsion = 14385.852317 eV Total energy + Delta-G solvation = -3684.079567 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.22996 -47.78492 -47.69193 -39.59926 -37.52646 -34.20555 -32.93877 -32.04393 -27.42880 -26.73075 -23.21596 -22.04434 -21.65534 -20.46178 -18.73704 -18.55579 -18.42283 -17.38238 -16.45491 -15.90920 -14.89549 -14.77543 -14.60554 -14.59450 -14.16370 -14.11814 -13.93705 -13.87509 -13.60367 -13.15411 -12.71753 -12.22221 -12.01036 -11.93794 -11.41896 -11.09382 -10.95993 -10.90071 -10.33870 -9.57888 -9.41099 -8.86289 -8.73386 -7.87049 -6.18298 -4.25313 2.45780 2.92381 3.10511 3.23086 3.29524 3.31784 3.66749 3.74018 3.88257 4.20849 4.30294 4.40522 4.57704 4.80782 4.91796 5.17947 5.34679 5.53493 5.69439 6.57186 6.97794 7.40421 7.47911 7.51847 7.81184 7.97764 8.68982 8.83453 9.20352 9.42151 10.91870 Molecular weight = 252.08amu Principal moments of inertia in cm(-1) A = 0.055016 B = 0.003679 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.824280 B = 7609.056841 C = 7676.457698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.724 5.724 11 C 0.696 3.304 12 O -0.593 6.593 13 N -0.726 5.726 14 C 0.151 3.849 15 H 0.149 0.851 16 C -0.165 4.165 17 C -0.251 4.251 18 H 0.147 0.853 19 C 0.487 3.513 20 F -0.177 7.177 21 F -0.181 7.181 22 F -0.182 7.182 23 H 0.266 0.734 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.388 0.612 27 H 0.396 0.604 28 H 0.119 0.881 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.013 -17.266 -0.145 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.376 5.376 11 C 0.396 3.604 12 O -0.471 6.471 13 N -0.381 5.381 14 C 0.042 3.958 15 H 0.167 0.833 16 C -0.204 4.204 17 C -0.273 4.273 18 H 0.164 0.836 19 C 0.433 3.567 20 F -0.158 7.158 21 F -0.162 7.162 22 F -0.164 7.164 23 H 0.076 0.924 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.220 0.780 27 H 0.230 0.770 28 H 0.137 0.863 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.664 -17.249 -0.165 18.875 hybrid contribution 1.417 0.796 -0.256 1.645 sum 9.081 -16.453 -0.421 18.797 Atomic orbital electron populations 1.69971 1.06094 1.27355 1.48749 1.24948 0.94926 0.99432 0.94713 0.86400 0.79572 0.82610 0.78214 1.20466 1.20982 1.19789 1.21205 0.93265 0.90366 1.53364 0.91916 1.19039 0.87731 0.80909 0.97811 1.45738 1.11012 1.04172 1.76686 1.16078 0.85070 0.80973 0.78268 1.90895 1.14039 1.83998 1.58216 1.44549 1.09036 1.03339 1.81143 1.21287 0.97575 0.78296 0.98630 0.83347 1.23732 1.04515 1.03031 0.89161 1.24041 1.04681 0.99360 0.99177 0.83557 1.19450 0.76469 0.83038 0.77746 1.93232 1.79290 1.87374 1.55917 1.93168 1.70911 1.81841 1.70321 1.93179 1.61651 1.71598 1.89946 0.92397 0.95546 0.95543 0.78000 0.76975 0.86317 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 13.29 55.43 0.74 -25.10 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 15 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 7 C -0.54 -14.52 9.28 -34.44 -0.32 -14.84 15 8 H 0.06 1.56 7.60 -52.48 -0.40 1.16 15 9 C 0.27 6.97 5.43 -5.20 -0.03 6.94 15 10 N -0.72 -14.87 5.55 -66.42 -0.37 -15.24 15 11 C 0.70 13.72 8.57 -86.92 -0.74 12.98 15 12 O -0.59 -14.35 15.91 5.29 0.08 -14.26 15 13 N -0.73 -9.93 5.57 -58.68 -0.33 -10.25 15 14 C 0.15 1.83 6.08 -67.93 -0.41 1.41 15 15 H 0.15 2.12 7.40 -51.93 -0.38 1.74 15 16 C -0.17 -1.42 9.85 -26.73 -0.26 -1.68 15 17 C -0.25 -2.32 5.82 -90.62 -0.53 -2.85 15 18 H 0.15 1.08 8.14 -51.93 -0.42 0.66 15 19 C 0.49 5.17 3.36 37.16 0.12 5.30 15 20 F -0.18 -2.22 17.27 2.25 0.04 -2.18 15 21 F -0.18 -1.97 15.89 2.25 0.04 -1.94 15 22 F -0.18 -1.92 17.32 2.25 0.04 -1.88 15 23 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 15 26 H 0.39 6.66 8.34 -40.82 -0.34 6.32 15 27 H 0.40 4.04 8.84 -40.82 -0.36 3.68 15 28 H 0.12 0.95 7.22 -51.93 -0.37 0.58 15 29 H 0.12 0.81 8.14 -51.93 -0.42 0.39 15 LS Contribution 275.76 15.07 4.16 4.16 Total: -1.00 -32.03 275.76 -5.58 -37.61 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -2.68 Total: 4.62 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -2.27 Total: 8.91 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.04 Total: -50.60 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.08 Total: -14.26 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.11 Total: -6.01 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.03 -5.58 -37.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875540979.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.337 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds