Wall clock time and date at job start Sun Mar 29 2020 22:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35901 * 117.00063 * 2 1 4 4 C 1.38755 * 120.05738 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94764 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05418 * 359.92957 * 5 4 3 7 7 C 1.38245 * 120.11203 * 0.02562 * 6 5 4 8 8 C 1.38165 * 120.05717 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.03340 * 179.70111 * 8 7 6 10 10 H 1.09004 * 109.47363 * 144.99681 * 9 8 7 11 11 O 1.42900 * 109.46702 * 25.00348 * 9 8 7 12 12 C 1.50691 * 109.46984 * 265.00284 * 9 8 7 13 13 O 1.21217 * 120.00465 * 115.00212 * 12 9 8 14 14 O 1.34316 * 120.00085 * 294.99152 * 12 9 8 15 15 C 1.34926 * 116.99744 * 180.02562 * 14 12 9 16 16 H 1.07997 * 120.00379 * 0.02562 * 15 14 12 17 17 C 1.38753 * 119.99436 * 180.02562 * 15 14 12 18 18 N 1.31441 * 120.00172 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99695 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47160 * 90.00114 * 19 17 15 21 21 H 1.48499 * 109.47000 * 209.99766 * 19 17 15 22 22 H 1.48497 * 109.47053 * 329.99826 * 19 17 15 23 23 H 1.09007 * 109.46892 * 300.00164 * 1 2 3 24 24 H 1.08998 * 109.46929 * 59.99815 * 1 2 3 25 25 H 1.08994 * 109.47479 * 180.02562 * 1 2 3 26 26 H 1.08005 * 120.02866 * 0.04253 * 4 3 2 27 27 H 1.08000 * 119.97360 * 179.97438 * 5 4 3 28 28 H 1.07999 * 119.94728 * 180.02562 * 6 5 4 29 29 H 1.07997 * 119.97370 * 179.97438 * 7 6 5 30 30 H 0.96703 * 113.99758 * 299.99820 * 11 9 8 31 31 H 0.97000 * 119.99925 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3020 3.6758 0.0004 7 6 4.0560 2.5171 0.0008 8 6 3.4312 1.2848 0.0003 9 6 4.2537 0.0221 -0.0061 10 1 3.7491 -0.7433 0.5835 11 8 5.5390 0.2881 0.5589 12 6 4.4185 -0.4629 -1.4233 13 8 5.5183 -0.4843 -1.9326 14 8 3.3468 -0.8716 -2.1222 15 6 3.5638 -1.2940 -3.3851 16 1 4.5649 -1.2932 -3.7903 17 6 2.5008 -1.7294 -4.1632 18 7 1.2824 -1.7309 -3.6699 19 14 2.8012 -2.3149 -5.9115 20 1 3.0715 -3.7751 -5.9049 21 1 1.6003 -2.0376 -6.7397 22 1 3.9708 -1.5976 -6.4796 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.2129 2.3204 0.0016 27 1 1.3340 4.5114 0.0000 28 1 3.7923 4.6380 0.0004 29 1 5.1344 2.5752 0.0007 30 1 6.0457 0.9611 0.0841 31 1 0.5392 -2.0350 -4.2140 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885872362.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:23 Heat of formation + Delta-G solvation = -135.178307 kcal Electronic energy + Delta-G solvation = -18879.762121 eV Core-core repulsion = 15706.494011 eV Total energy + Delta-G solvation = -3173.268110 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.16303 -38.85695 -37.26493 -36.26269 -34.69850 -32.16123 -31.35909 -29.88938 -27.24984 -26.74256 -24.92959 -21.84865 -21.81330 -20.18178 -18.06320 -17.68809 -17.15278 -16.34376 -16.07488 -15.26423 -15.03406 -14.62247 -14.39246 -14.11007 -14.06922 -13.64453 -12.94311 -12.66398 -12.44223 -11.90227 -11.74832 -11.51497 -11.25226 -11.09908 -10.93593 -10.72764 -10.43153 -10.42185 -10.20226 -9.75468 -9.09868 -8.53979 -8.52242 -7.78547 -6.38077 -4.04362 1.49310 1.72190 3.10945 3.19546 3.25144 3.49797 3.69631 3.88817 4.05232 4.50557 4.83502 4.92157 5.05587 5.15183 5.22105 5.38069 5.52618 5.57627 5.65752 5.81345 5.93476 5.98039 6.16986 6.53750 6.61134 6.70884 6.72436 7.01074 7.41166 7.75833 7.83575 7.97830 8.72118 9.10387 9.89202 10.78805 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.008358 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.992003 B = 3349.335140 C = 3988.776840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.290 6.290 3 C 0.165 3.835 4 C -0.213 4.213 5 C -0.079 4.079 6 C -0.165 4.165 7 C -0.070 4.070 8 C -0.147 4.147 9 C 0.178 3.822 10 H 0.134 0.866 11 O -0.534 6.534 12 C 0.372 3.628 13 O -0.554 6.554 14 O -0.194 6.194 15 C -0.382 4.382 16 H 0.093 0.907 17 C 0.045 3.955 18 N -0.858 5.858 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.267 1.267 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.378 0.622 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.906 8.228 7.614 11.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.201 6.201 3 C 0.118 3.882 4 C -0.232 4.232 5 C -0.098 4.098 6 C -0.183 4.183 7 C -0.088 4.088 8 C -0.148 4.148 9 C 0.117 3.883 10 H 0.151 0.849 11 O -0.341 6.341 12 C 0.218 3.782 13 O -0.452 6.452 14 O -0.100 6.100 15 C -0.458 4.458 16 H 0.111 0.889 17 C -0.160 4.160 18 N -0.495 5.495 19 Si 0.764 3.236 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.192 1.192 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.118 0.882 26 H 0.146 0.854 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.227 0.773 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.987 7.495 7.823 11.238 hybrid contribution -0.051 0.284 -1.404 1.433 sum -3.038 7.779 6.419 10.533 Atomic orbital electron populations 1.22972 0.78403 1.04104 1.00274 1.86216 1.21305 1.25515 1.87090 1.18738 0.91296 0.85006 0.93179 1.21194 1.00026 0.92274 1.09674 1.20883 0.94611 0.96797 0.97474 1.20876 0.93890 0.97896 1.05685 1.20671 0.99822 0.91048 0.97275 1.19569 0.91372 0.95635 1.08208 1.19800 0.83368 0.94386 0.90772 0.84863 1.86574 1.28655 1.63771 1.55054 1.23812 0.84339 0.80581 0.89484 1.90557 1.27367 1.56393 1.70911 1.83942 1.33672 1.66416 1.25958 1.21240 0.95976 1.42722 0.85878 0.88935 1.25277 0.94336 0.96542 0.99796 1.70011 0.98758 1.43785 1.36918 0.85733 0.78155 0.79186 0.80486 1.19894 1.20402 1.19182 0.93738 0.92437 0.88197 0.85400 0.86095 0.86046 0.85568 0.77309 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.81 101.05 0.99 1.56 16 2 O -0.29 -5.67 9.40 -19.43 -0.18 -5.85 16 3 C 0.16 3.07 6.66 -39.22 -0.26 2.81 16 4 C -0.21 -3.32 9.04 -39.43 -0.36 -3.68 16 5 C -0.08 -1.10 10.04 -39.61 -0.40 -1.49 16 6 C -0.17 -2.31 10.04 -39.56 -0.40 -2.70 16 7 C -0.07 -1.12 9.30 -39.61 -0.37 -1.49 16 8 C -0.15 -2.77 5.05 -104.47 -0.53 -3.30 16 9 C 0.18 3.68 3.45 -29.04 -0.10 3.58 16 10 H 0.13 2.70 7.70 -51.93 -0.40 2.30 16 11 O -0.53 -9.97 12.64 -55.10 -0.70 -10.67 16 12 C 0.37 9.68 7.21 36.00 0.26 9.94 16 13 O -0.55 -15.51 15.56 -25.77 -0.40 -15.91 16 14 O -0.19 -5.65 9.50 -20.87 -0.20 -5.85 16 15 C -0.38 -11.49 9.65 30.92 0.30 -11.19 16 16 H 0.09 2.83 6.86 -52.49 -0.36 2.47 16 17 C 0.04 1.27 5.49 -17.53 -0.10 1.17 16 18 N -0.86 -24.66 13.67 55.48 0.76 -23.90 16 19 Si 0.94 21.51 29.55 -169.99 -5.02 16.49 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H 0.04 0.52 7.66 -51.92 -0.40 0.13 16 24 H 0.06 0.89 7.66 -51.93 -0.40 0.49 16 25 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 26 H 0.13 1.69 6.30 -52.48 -0.33 1.36 16 27 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.13 1.72 6.40 -52.49 -0.34 1.38 16 30 H 0.38 6.03 7.07 45.56 0.32 6.36 16 31 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 279.60 15.07 4.21 4.21 Total: -1.00 -34.62 279.60 -4.79 -39.41 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -2.30 Total: 6.88 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -0.96 Total: -4.80 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.76 Total: -23.90 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -1.48 Total: -38.29 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -34.62 -4.79 -39.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885872362.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.769 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds