Wall clock time and date at job start Sun Mar 29 2020 23:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35508 * 116.99814 * 2 1 4 4 C 1.39665 * 120.48891 * 179.97438 * 3 2 1 5 5 C 1.39178 * 118.19691 * 180.02562 * 4 3 2 6 6 C 1.48365 * 120.51772 * 179.97438 * 5 4 3 7 7 O 1.21391 * 120.00262 * 0.02562 * 6 5 4 8 8 O 1.34642 * 119.99724 * 180.02562 * 6 5 4 9 9 C 1.45199 * 116.99981 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47285 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.47282 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99955 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00137 * 180.02562 * 11 10 9 14 14 N 1.31508 * 119.99967 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99752 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47243 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.46812 * 120.00118 * 15 13 11 18 18 H 1.48502 * 109.46507 * 239.99616 * 15 13 11 19 19 N 1.33309 * 118.96084 * 359.97438 * 5 4 3 20 20 C 1.31520 * 120.88200 * 359.97438 * 19 5 4 21 21 N 1.31895 * 121.99551 * 0.02562 * 20 19 5 22 22 H 1.09004 * 109.46726 * 60.00605 * 1 2 3 23 23 H 1.08999 * 109.47202 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47618 * 300.00618 * 1 2 3 25 25 H 1.07993 * 120.90001 * 359.74394 * 4 3 2 26 26 H 1.09001 * 109.46885 * 299.99530 * 9 8 6 27 27 H 1.09005 * 109.47486 * 59.99409 * 9 8 6 28 28 H 1.08993 * 109.47228 * 300.00062 * 10 9 8 29 29 H 1.08997 * 109.46868 * 60.00130 * 10 9 8 30 30 H 0.96998 * 120.00204 * 180.02562 * 14 13 11 31 31 H 1.08004 * 118.99921 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4382 1.2924 0.0005 5 6 4.0199 2.5568 0.0011 6 6 5.4959 2.7071 0.0022 7 8 6.2063 1.7227 0.0022 8 8 6.0476 3.9353 0.0032 9 6 7.4978 4.0066 0.0038 10 6 7.9364 5.4724 0.0043 11 6 9.4416 5.5464 0.0054 12 1 10.0269 4.6387 0.0054 13 6 10.0716 6.7728 0.0066 14 7 9.3589 7.8781 0.0072 15 14 11.9374 6.8644 0.0073 16 1 12.5004 5.4904 0.0071 17 1 12.3978 7.5889 -1.2045 18 1 12.3969 7.5871 1.2205 19 7 3.2301 3.6307 0.0005 20 6 1.9208 3.5058 -0.0010 21 7 1.3314 2.3259 -0.0016 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 4.0482 0.4013 0.0051 26 1 7.8856 3.5107 0.8936 27 1 7.8863 3.5117 -0.8864 28 1 7.5486 5.9680 -0.8857 29 1 7.5480 5.9675 0.8942 30 1 9.8021 8.7409 0.0076 31 1 1.3099 4.3964 -0.0010 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923912109.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:09 Heat of formation + Delta-G solvation = -74.577631 kcal Electronic energy + Delta-G solvation = -17297.132587 eV Core-core repulsion = 14158.785071 eV Total energy + Delta-G solvation = -3138.347516 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.60828 -39.91965 -38.73438 -36.29956 -33.73760 -33.29245 -32.14394 -30.30819 -28.09949 -26.03144 -24.59027 -24.49312 -21.69245 -20.81030 -18.98742 -18.63930 -16.83596 -16.66834 -16.20157 -16.05646 -16.00926 -15.73305 -15.19723 -14.58853 -14.47955 -14.39960 -13.30459 -12.89595 -12.45396 -12.36873 -12.04347 -11.29788 -11.15907 -11.05555 -10.87142 -10.80587 -10.67118 -10.56427 -9.84224 -9.69396 -9.60828 -9.51288 -9.28336 -8.44120 -6.09636 -4.14243 0.16635 0.71992 2.27352 2.48893 2.91357 3.28247 3.35611 3.40259 3.56198 3.68078 3.85258 4.38327 4.53091 4.64124 4.84527 4.89037 5.05536 5.20862 5.26773 5.26974 5.75691 5.99347 6.04628 6.38143 6.59644 6.68134 6.76766 7.53063 7.63305 7.65196 7.85075 8.04046 8.23366 8.91543 9.50119 11.01849 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.064198 B = 0.003511 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.044561 B = 7972.054498 C = 8382.350192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.297 6.297 3 C 0.363 3.637 4 C -0.183 4.183 5 C 0.182 3.818 6 C 0.515 3.485 7 O -0.495 6.495 8 O -0.325 6.325 9 C 0.072 3.928 10 C 0.025 3.975 11 C -0.526 4.526 12 H 0.060 0.940 13 C 0.061 3.939 14 N -0.889 5.889 15 Si 0.899 3.101 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 N -0.489 5.489 20 C 0.334 3.666 21 N -0.563 5.563 22 H 0.064 0.936 23 H 0.102 0.898 24 H 0.064 0.936 25 H 0.168 0.832 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.263 0.737 31 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.119 -12.714 -0.012 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.201 6.201 3 C 0.174 3.826 4 C -0.206 4.206 5 C 0.039 3.961 6 C 0.356 3.644 7 O -0.383 6.383 8 O -0.239 6.239 9 C -0.001 4.001 10 C -0.012 4.012 11 C -0.565 4.565 12 H 0.078 0.922 13 C -0.142 4.142 14 N -0.527 5.527 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 N -0.210 5.210 20 C 0.046 3.954 21 N -0.294 5.294 22 H 0.083 0.917 23 H 0.120 0.880 24 H 0.082 0.918 25 H 0.186 0.814 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -18.244 -12.303 -0.012 22.004 hybrid contribution 1.244 -0.536 0.001 1.355 sum -17.000 -12.838 -0.011 21.303 Atomic orbital electron populations 1.23016 0.76194 1.03633 1.02990 1.86259 1.23705 1.23466 1.86663 1.19936 0.89006 0.85276 0.88385 1.21881 0.92975 1.00207 1.05580 1.20472 0.92694 0.88658 0.94294 1.20482 0.86838 0.83091 0.74007 1.90837 1.62121 1.39998 1.45296 1.86706 1.27966 1.28145 1.81095 1.23838 0.71714 1.03248 1.01262 1.19183 0.96009 0.86874 0.99171 1.21006 0.90455 0.92778 1.52222 0.92162 1.24985 0.98756 0.95548 0.94874 1.69984 1.35429 0.97552 1.49729 0.86416 0.84953 0.78249 0.77699 1.19587 1.20830 1.20836 1.68575 1.06180 1.32564 1.13636 1.24873 0.88024 0.93792 0.88693 1.68069 1.42069 0.99395 1.19896 0.91741 0.87998 0.91750 0.81419 0.91888 0.91894 0.95137 0.95138 0.92738 0.77309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.41 101.05 1.05 1.29 16 2 O -0.30 -2.96 10.49 -18.22 -0.19 -3.15 16 3 C 0.36 4.19 7.54 -16.68 -0.13 4.07 16 4 C -0.18 -2.33 9.68 -38.70 -0.37 -2.71 16 5 C 0.18 2.77 6.79 -82.71 -0.56 2.21 16 6 C 0.51 9.39 7.97 34.90 0.28 9.67 16 7 O -0.49 -9.54 16.21 -19.18 -0.31 -9.85 16 8 O -0.33 -6.74 10.07 -40.34 -0.41 -7.15 16 9 C 0.07 1.59 5.41 37.16 0.20 1.79 16 10 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 11 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 12 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 15 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 N -0.49 -7.15 10.25 -11.21 -0.11 -7.26 16 20 C 0.33 3.71 12.27 -92.30 -1.13 2.57 16 21 N -0.56 -6.23 9.36 -14.64 -0.14 -6.37 16 22 H 0.06 0.40 8.12 -51.93 -0.42 -0.02 16 23 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.40 8.12 -51.93 -0.42 -0.02 16 25 H 0.17 1.96 7.73 -52.49 -0.41 1.55 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.21 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 289.28 15.07 4.36 4.36 Total: -1.00 -32.09 289.28 -5.63 -37.72 By element: Atomic # 1 Polarization: -1.58 SS G_CDS: -3.33 Total: -4.91 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -1.22 Total: 5.92 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.48 Total: -39.29 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.91 Total: -20.16 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.09 -5.63 -37.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923912109.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.854 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds