Wall clock time and date at job start Sun Mar 29 2020 23:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35467 * 117.00562 * 2 1 4 4 N 1.32432 * 119.10677 * 359.97438 * 3 2 1 5 5 C 1.32125 * 120.98028 * 179.97438 * 4 3 2 6 6 C 1.38823 * 119.22310 * 0.02562 * 5 4 3 7 7 C 1.39489 * 118.37927 * 0.27465 * 6 5 4 8 8 C 1.48381 * 120.51956 * 179.70555 * 7 6 5 9 9 O 1.21388 * 119.99498 * 359.97438 * 8 7 6 10 10 O 1.34631 * 120.00138 * 180.02562 * 8 7 6 11 11 C 1.45202 * 116.99970 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47248 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47259 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99725 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99959 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00062 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99900 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47274 * 59.99751 * 17 15 13 19 19 H 1.48497 * 109.47160 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46936 * 299.99718 * 17 15 13 21 21 N 1.32067 * 119.11528 * 180.02562 * 3 2 1 22 22 H 1.08999 * 109.47450 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46563 * 300.00137 * 1 2 3 24 24 H 1.09000 * 109.47074 * 59.99468 * 1 2 3 25 25 H 1.07998 * 120.39013 * 180.02562 * 5 4 3 26 26 H 1.08002 * 120.80733 * 179.97438 * 6 5 4 27 27 H 1.08996 * 109.47176 * 299.99865 * 11 10 8 28 28 H 1.08998 * 109.47312 * 60.00384 * 11 10 8 29 29 H 1.09004 * 109.46812 * 299.99766 * 12 11 10 30 30 H 1.09004 * 109.46849 * 59.99624 * 12 11 10 31 31 H 0.97004 * 120.00359 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2070 0.0000 4 7 1.3057 2.3063 -0.0005 5 6 1.8668 3.5025 0.0000 6 6 3.2515 3.6015 0.0005 7 6 4.0004 2.4247 -0.0054 8 6 5.4833 2.4752 -0.0117 9 8 6.0540 3.5466 -0.0122 10 8 6.1958 1.3329 -0.0178 11 6 7.6424 1.4583 -0.0243 12 6 8.2751 0.0652 -0.0301 13 6 9.7764 0.1953 -0.0362 14 1 10.2336 1.1738 -0.0364 15 6 10.5663 -0.9348 -0.0426 16 7 10.0096 -2.1262 -0.0429 17 14 12.4273 -0.7735 -0.0509 18 1 12.8657 -0.0362 1.1613 19 1 13.0413 -2.1255 -0.0564 20 1 12.8543 -0.0305 -1.2637 21 7 3.3639 1.2556 -0.0005 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.2555 4.3928 0.0000 26 1 3.7371 4.5662 0.0005 27 1 7.9558 2.0037 -0.9144 28 1 7.9642 1.9993 0.8655 29 1 7.9616 -0.4799 0.8603 30 1 7.9532 -0.4763 -0.9197 31 1 10.5652 -2.9213 -0.0470 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923924322.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:33 Heat of formation + Delta-G solvation = -91.532548 kcal Electronic energy + Delta-G solvation = -17405.334521 eV Core-core repulsion = 14266.251784 eV Total energy + Delta-G solvation = -3139.082737 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.61003 -41.35649 -39.39656 -37.87200 -35.52746 -35.18409 -32.79762 -32.30829 -28.63000 -27.72441 -26.47248 -25.07614 -23.26874 -22.50727 -20.13313 -19.55965 -18.63955 -17.98107 -17.88123 -17.62538 -17.37565 -16.64597 -16.43492 -15.67832 -15.43050 -15.04780 -14.77059 -14.56960 -14.36564 -13.21759 -13.10138 -12.94777 -12.64020 -12.60915 -12.42603 -12.41042 -12.20618 -12.16734 -11.67771 -11.53862 -11.46765 -10.61382 -10.54222 -10.26944 -8.26435 -6.41026 -0.89502 -0.15577 1.16724 1.18881 1.41628 1.45970 1.52714 1.57637 2.39503 2.54138 2.79003 3.07717 3.20298 3.46239 3.69247 4.08154 4.17533 4.19111 4.37437 4.41116 4.49514 4.65719 4.70817 4.91987 5.09851 5.34691 5.43277 5.43887 5.70980 5.95816 6.03955 6.40515 6.72760 6.79655 7.29025 8.86268 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.035008 B = 0.004007 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.619212 B = 6985.365840 C = 7759.230991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.311 6.311 3 C 0.487 3.513 4 N -0.543 5.543 5 C 0.211 3.789 6 C -0.187 4.187 7 C 0.164 3.836 8 C 0.515 3.485 9 O -0.502 6.502 10 O -0.347 6.347 11 C 0.087 3.913 12 C 0.029 3.971 13 C -0.551 4.551 14 H 0.071 0.929 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.978 3.022 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.264 1.264 21 N -0.527 5.527 22 H 0.127 0.873 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.245 0.755 26 H 0.193 0.807 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.003 0.997 30 H 0.003 0.997 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.586 11.999 0.087 23.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.212 6.212 3 C 0.184 3.816 4 N -0.273 5.273 5 C 0.043 3.957 6 C -0.210 4.210 7 C 0.020 3.980 8 C 0.357 3.643 9 O -0.390 6.390 10 O -0.262 6.262 11 C 0.014 3.986 12 C -0.008 4.008 13 C -0.588 4.588 14 H 0.089 0.911 15 C -0.195 4.195 16 N -0.568 5.568 17 Si 0.801 3.199 18 H -0.189 1.189 19 H -0.206 1.206 20 H -0.188 1.188 21 N -0.256 5.256 22 H 0.145 0.855 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.261 0.739 26 H 0.210 0.790 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.021 0.979 30 H 0.021 0.979 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.699 10.845 0.088 23.369 hybrid contribution 1.346 0.279 -0.002 1.375 sum -19.353 11.124 0.086 22.323 Atomic orbital electron populations 1.23350 0.73058 1.05631 1.03520 1.86138 1.25907 1.22425 1.86750 1.20709 0.85093 0.86028 0.89760 1.68181 1.40973 0.99587 1.18601 1.24116 0.91443 0.95303 0.84817 1.23182 0.96428 0.99860 1.01514 1.20323 0.90608 0.89749 0.97309 1.21084 0.87847 0.82347 0.73029 1.90803 1.71605 1.30623 1.45978 1.86704 1.23367 1.34246 1.81865 1.23375 0.72745 1.00604 1.01854 1.18991 0.94840 0.90432 0.96510 1.21348 0.90989 0.93779 1.52712 0.91125 1.26035 1.04925 0.94551 0.93980 1.70117 1.37939 0.98475 1.50258 0.85313 0.77644 0.77528 0.79431 1.18857 1.20630 1.18847 1.67358 1.09785 1.30498 1.17944 0.85455 0.90988 0.90982 0.73904 0.78992 0.91141 0.91152 0.97882 0.97879 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.36 113.37 1.17 1.75 16 2 O -0.31 -8.31 10.55 -87.66 -0.93 -9.24 16 3 C 0.49 13.68 8.48 180.61 1.53 15.21 16 4 N -0.54 -10.87 9.20 -313.44 -2.88 -13.76 16 5 C 0.21 2.79 11.30 84.79 0.96 3.74 16 6 C -0.19 -3.52 9.71 22.71 0.22 -3.30 16 7 C 0.16 5.02 6.79 41.95 0.28 5.30 16 8 C 0.51 19.14 7.97 70.52 0.56 19.70 16 9 O -0.50 -18.74 16.21 20.20 0.33 -18.41 16 10 O -0.35 -15.44 10.07 -55.40 -0.56 -16.00 16 11 C 0.09 4.03 5.41 71.98 0.39 4.42 16 12 C 0.03 1.66 5.35 29.85 0.16 1.82 16 13 C -0.55 -31.78 9.11 25.60 0.23 -31.55 16 14 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 15 C 0.00 0.23 5.46 84.65 0.46 0.69 16 16 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 17 Si 0.98 44.11 29.54 68.60 2.03 46.14 16 18 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 N -0.53 -18.12 10.28 -302.75 -3.11 -21.23 16 22 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.07 0.93 8.09 -2.38 -0.02 0.91 16 24 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 25 H 0.24 0.25 8.06 -2.91 -0.02 0.22 16 26 H 0.19 2.61 7.73 -2.91 -0.02 2.58 16 27 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 28 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 30 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 31 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -76.10 289.12 2.28 -73.82 By element: Atomic # 1 Polarization: -3.32 SS G_CDS: 1.15 Total: -2.17 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 5.98 Total: 17.78 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -5.71 Total: -91.93 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -1.16 Total: -43.65 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -76.10 2.28 -73.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923924322.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.711 kcal (2) G-P(sol) polarization free energy of solvation -76.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds