Wall clock time and date at job start Sun Mar 29 2020 23:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.35605 * 119.26377 * 90.00030 * 12 11 10 14 14 C 1.35088 * 120.69851 * 179.97438 * 13 12 11 15 15 C 1.41474 * 119.24658 * 359.97438 * 14 13 12 16 16 O 1.22255 * 120.67832 * 180.02562 * 15 14 13 17 17 C 1.41488 * 118.64082 * 0.02562 * 15 14 13 18 18 N 1.48004 * 120.37475 * 180.02562 * 17 15 14 19 19 O 1.21804 * 119.99481 * 179.97438 * 18 17 15 20 20 O 1.21793 * 120.00809 * 359.97438 * 18 17 15 21 21 C 1.35087 * 119.23940 * 359.74363 * 17 15 14 22 22 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.08002 * 119.64883 * 359.97438 * 13 12 11 30 30 H 1.08005 * 120.37468 * 180.02562 * 14 13 12 31 31 H 1.07999 * 119.64879 * 180.26871 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 7 6.0398 -4.0179 -0.0027 13 6 6.2598 -4.6427 -1.1859 14 6 6.7105 -5.9158 -1.2202 15 6 6.9531 -6.5961 -0.0038 16 8 7.3616 -7.7484 -0.0042 17 6 6.7134 -5.9156 1.2133 18 7 6.9549 -6.5905 2.5082 19 8 6.7466 -5.9980 3.5519 20 8 7.3617 -7.7383 2.5304 21 6 6.2672 -4.6410 1.1799 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8745 -0.6801 -0.8911 25 1 3.6584 -3.1503 0.8892 26 1 3.6578 -3.1506 -0.8907 27 1 5.9141 -2.1231 -0.8927 28 1 5.9156 -2.1225 0.8872 29 1 6.0728 -4.1170 -2.1107 30 1 6.8843 -6.4083 -2.1656 31 1 6.0862 -4.1139 2.1050 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116284510.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:44 Heat of formation + Delta-G solvation = -12.089532 kcal Electronic energy + Delta-G solvation = -17720.639022 eV Core-core repulsion = 14585.001193 eV Total energy + Delta-G solvation = -3135.637829 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.26116 -41.16317 -38.48400 -36.23534 -35.08024 -33.06157 -32.70919 -31.41803 -27.89275 -26.69272 -24.19673 -23.64706 -22.74529 -20.78218 -19.39421 -18.82005 -17.59258 -17.40365 -17.39388 -16.96065 -16.25178 -15.47193 -15.06920 -14.63014 -14.38044 -14.00338 -13.81515 -13.10486 -12.86796 -12.36056 -12.26299 -11.59157 -11.36682 -11.19512 -11.13976 -10.90517 -10.56189 -10.45557 -10.26885 -10.05263 -9.81986 -9.54273 -8.80005 -8.65944 -6.28812 -4.30824 -0.10644 0.82211 1.29007 1.35479 2.14927 3.09902 3.17051 3.19563 3.20334 3.75481 4.11456 4.12705 4.20420 4.33128 4.59818 4.80518 4.95693 5.03980 5.09200 5.20049 5.61572 5.75169 5.79410 6.09557 6.20697 6.28416 6.48810 6.79406 6.92841 7.46478 7.58645 7.87584 8.23709 8.73766 9.30749 10.84202 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.034411 B = 0.004313 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.493082 B = 6491.115654 C = 6829.892386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.123 4.123 11 C 0.076 3.924 12 N -0.450 5.450 13 C 0.132 3.868 14 C -0.252 4.252 15 C 0.404 3.596 16 O -0.478 6.478 17 C -0.230 4.230 18 N 0.058 4.942 19 O -0.203 6.203 20 O -0.133 6.133 21 C 0.247 3.753 22 H 0.266 0.734 23 H 0.021 0.979 24 H 0.016 0.984 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.182 0.818 30 H 0.167 0.833 31 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.552 -3.348 -2.739 14.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.162 4.162 11 C -0.043 4.043 12 N -0.133 5.133 13 C 0.009 3.991 14 C -0.275 4.275 15 C 0.291 3.709 16 O -0.359 6.359 17 C -0.324 4.324 18 N 0.572 4.428 19 O -0.406 6.406 20 O -0.354 6.354 21 C 0.109 3.891 22 H 0.076 0.924 23 H 0.039 0.961 24 H 0.035 0.965 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.199 0.801 30 H 0.184 0.816 31 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 13.395 -3.250 -3.370 14.189 hybrid contribution 0.207 0.938 0.284 1.002 sum 13.601 -2.311 -3.086 14.137 Atomic orbital electron populations 1.69896 1.06386 1.27283 1.49789 1.25034 0.94759 0.99259 0.94202 0.86772 0.80249 0.83597 0.78560 1.20174 1.21119 1.19070 1.20986 0.88902 0.94709 1.52379 0.90949 1.19511 0.97954 0.90332 0.96857 1.22021 0.88923 1.02127 1.03091 1.23021 0.98851 0.76207 1.06234 1.43861 1.50373 1.15554 1.03554 1.22229 0.93284 0.94142 0.89457 1.22496 1.09192 0.94995 1.00818 1.16770 0.78983 0.88587 0.86608 1.90951 1.39248 1.16585 1.89151 1.22356 1.25849 0.96708 0.87489 1.42782 0.97864 1.00821 1.01299 1.94511 1.57726 1.67251 1.21066 1.94608 1.45871 1.01037 1.93910 1.21736 0.84131 0.91438 0.91750 0.92376 0.96060 0.96530 0.91421 0.91335 0.87458 0.87773 0.80133 0.81565 0.79106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.68 13.96 55.43 0.77 -24.91 16 2 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 3 Si 0.88 19.24 27.47 -169.99 -4.67 14.57 16 4 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -5.38 6.54 56.52 0.37 -5.01 16 7 C -0.53 -13.30 9.66 -34.44 -0.33 -13.63 16 8 H 0.07 1.99 7.99 -52.49 -0.42 1.58 16 9 C -0.01 -0.16 4.04 -27.88 -0.11 -0.27 16 10 C -0.12 -1.65 5.48 -26.73 -0.15 -1.80 16 11 C 0.08 0.62 5.55 -4.04 -0.02 0.59 16 12 N -0.45 -3.72 2.60 -117.42 -0.31 -4.03 16 13 C 0.13 0.96 10.25 -17.00 -0.17 0.79 16 14 C -0.25 -2.44 10.01 -39.47 -0.39 -2.84 16 15 C 0.40 5.82 6.76 -37.11 -0.25 5.57 16 16 O -0.48 -8.80 16.15 -16.69 -0.27 -9.07 16 17 C -0.23 -3.17 6.86 -79.84 -0.55 -3.72 16 18 N 0.06 0.96 4.45 34.02 0.15 1.11 16 19 O -0.20 -3.26 18.43 -29.46 -0.54 -3.80 16 20 O -0.13 -2.49 17.51 -36.28 -0.64 -3.12 16 21 C 0.25 2.47 9.79 -17.01 -0.17 2.31 16 22 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 23 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 24 H 0.02 0.29 7.57 -51.93 -0.39 -0.10 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.11 0.65 7.99 -51.93 -0.42 0.23 16 28 H 0.10 0.70 7.99 -51.93 -0.41 0.29 16 29 H 0.18 0.66 8.02 -52.49 -0.42 0.24 16 30 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.19 1.52 7.51 -52.49 -0.39 1.12 16 LS Contribution 282.13 15.07 4.25 4.25 Total: -1.00 -33.84 282.13 -6.76 -40.60 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -3.27 Total: -4.37 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.25 Total: -11.24 kcal Atomic # 7 Polarization: -28.44 SS G_CDS: 0.62 Total: -27.82 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -1.45 Total: -15.99 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.67 Total: 14.57 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.84 -6.76 -40.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116284510.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.513 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds