Wall clock time and date at job start Sun Mar 29 2020 22:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47481 * 49.47878 * 3 2 1 5 5 C 1.36941 * 120.00234 * 95.94260 * 4 3 2 6 6 H 1.07998 * 120.00001 * 162.35094 * 5 4 3 7 7 C 1.38813 * 119.99799 * 342.07678 * 5 4 3 8 8 N 1.31623 * 119.99896 * 337.15146 * 7 5 4 9 9 Si 1.86802 * 120.00100 * 157.15414 * 7 5 4 10 10 H 1.48501 * 109.46922 * 89.99694 * 9 7 5 11 11 H 1.48498 * 109.47117 * 209.99481 * 9 7 5 12 12 H 1.48498 * 109.46812 * 329.99961 * 9 7 5 13 13 C 1.46499 * 120.00188 * 275.94246 * 4 3 2 14 14 C 1.50696 * 109.47527 * 269.99914 * 13 4 3 15 15 C 1.33381 * 125.96955 * 89.98913 * 14 13 4 16 16 N 1.32074 * 114.55708 * 179.97438 * 15 14 13 17 17 C 1.29509 * 116.92840 * 0.02562 * 16 15 14 18 18 O 1.35542 * 124.94657 * 180.02562 * 17 16 15 19 19 C 1.42902 * 116.99943 * 359.97438 * 18 17 16 20 20 S 1.70976 * 110.11347 * 359.74662 * 17 16 15 21 21 H 4.40637 * 5.51418 * 180.02562 * 4 1 2 22 22 H 1.09004 * 109.47234 * 289.47171 * 3 2 1 23 23 H 1.09007 * 109.46828 * 169.47658 * 3 2 1 24 24 H 0.97000 * 119.99698 * 180.02562 * 8 7 5 25 25 H 1.09008 * 109.46630 * 29.99808 * 13 4 3 26 26 H 1.09004 * 109.47218 * 149.99572 * 13 4 3 27 27 H 1.07999 * 122.71924 * 359.96825 * 15 14 13 28 28 H 1.08998 * 109.47718 * 180.02562 * 19 18 17 29 29 H 1.09010 * 109.46898 * 299.99869 * 19 18 17 30 30 H 1.08998 * 109.47172 * 59.99676 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1347 -0.8965 -1.0499 5 6 3.4786 -0.3925 -2.2759 6 1 4.0942 -0.9746 -2.9456 7 6 3.0310 0.8641 -2.6601 8 7 1.9566 1.3794 -2.1009 9 14 3.9535 1.8237 -3.9707 10 1 3.4010 1.4913 -5.3084 11 1 3.7992 3.2791 -3.7191 12 1 5.3934 1.4635 -3.9263 13 6 3.2558 -2.3328 -0.7883 14 6 4.6294 -2.6305 -0.2449 15 6 4.9792 -2.6328 1.0423 16 7 6.2474 -2.9260 1.2659 17 6 6.9845 -3.1707 0.2295 18 8 8.3016 -3.4879 0.2708 19 6 8.9128 -3.5539 1.5608 20 16 6.0524 -3.0429 -1.1982 21 1 -1.0499 0.0000 -0.0003 22 1 3.0095 -0.3418 0.9689 23 1 3.0088 1.0113 -0.1877 24 1 1.6437 2.2573 -2.3697 25 1 2.5035 -2.6339 -0.0591 26 1 3.1044 -2.8851 -1.7158 27 1 4.2819 -2.4127 1.8371 28 1 9.9651 -3.8159 1.4514 29 1 8.8294 -2.5846 2.0525 30 1 8.4102 -4.3110 2.1627 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119982979.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:01 Heat of formation + Delta-G solvation = 99.054735 kcal Electronic energy + Delta-G solvation = -15863.257000 eV Core-core repulsion = 13175.191619 eV Total energy + Delta-G solvation = -2688.065381 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.75730 -37.75780 -36.07687 -31.99373 -31.61350 -29.46134 -27.83335 -26.33709 -25.49538 -23.65091 -21.52663 -19.86841 -18.30050 -17.54508 -16.60885 -16.09340 -16.04244 -15.13047 -14.79967 -14.19755 -13.83468 -13.57944 -13.21927 -13.07328 -12.22883 -11.99954 -11.70062 -11.55315 -11.24221 -11.00161 -10.81269 -10.49493 -10.34132 -10.05815 -9.46912 -9.04231 -8.90664 -8.71345 -8.50785 -7.95772 -7.12285 -5.87202 -3.28290 1.23874 1.33013 2.25573 3.24410 3.33981 3.42231 3.45707 3.67663 4.13603 4.33371 4.49086 4.72223 5.23051 5.26358 5.27912 5.55786 5.59523 5.70446 5.82176 5.83496 6.27262 6.36323 6.54093 6.65120 7.13959 7.15567 7.36014 7.68692 8.03207 8.17906 9.00812 9.13700 9.66885 10.11778 11.15896 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.023387 B = 0.006999 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.938483 B = 3999.514136 C = 4805.271729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.098 4.098 3 C 0.267 3.733 4 N -0.573 5.573 5 C -0.271 4.271 6 H 0.075 0.925 7 C 0.010 3.990 8 N -0.882 5.882 9 Si 0.896 3.104 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.216 3.784 14 C -0.217 4.217 15 C 0.042 3.958 16 N -0.534 5.534 17 C 0.191 3.809 18 O -0.288 6.288 19 C 0.041 3.959 20 S 0.180 5.820 21 H 0.191 0.809 22 H 0.038 0.962 23 H 0.094 0.906 24 H 0.256 0.744 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.171 0.829 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.426 -8.183 5.445 12.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.101 4.101 3 C 0.142 3.858 4 N -0.291 5.291 5 C -0.400 4.400 6 H 0.093 0.907 7 C -0.190 4.190 8 N -0.524 5.524 9 Si 0.725 3.275 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.085 3.915 14 C -0.341 4.341 15 C -0.106 4.106 16 N -0.266 5.266 17 C -0.125 4.125 18 O -0.195 6.195 19 C -0.057 4.057 20 S 0.430 5.570 21 H 0.208 0.792 22 H 0.056 0.944 23 H 0.112 0.888 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.188 0.812 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.047 -8.215 4.641 12.400 hybrid contribution -0.340 0.991 0.235 1.073 sum 7.707 -7.224 4.876 11.635 Atomic orbital electron populations 1.24194 0.95342 1.05454 1.06462 1.24184 0.95198 0.95909 0.94830 1.17735 0.82885 0.96414 0.88738 1.44062 1.73718 1.00269 1.11076 1.19135 1.26387 1.00792 0.93691 0.90683 1.24893 0.96114 0.99331 0.98704 1.70150 1.19857 1.17713 1.44692 0.86401 0.80215 0.79532 0.81350 1.21339 1.21477 1.20260 1.19209 0.86680 0.86683 0.98885 1.27568 1.02130 1.08652 0.95795 1.21053 0.90487 1.03348 0.95755 1.66535 1.06648 1.21579 1.31815 1.25237 0.89938 1.02276 0.95002 1.86276 1.16601 1.84676 1.31915 1.22905 0.97117 1.02444 0.83235 1.84124 1.00510 1.65562 1.06756 0.79186 0.94372 0.88781 0.93377 0.91433 0.91743 0.81225 0.88573 0.92327 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.53 19.25 29.55 0.57 -5.96 16 2 C -0.10 -2.32 11.56 -37.12 -0.43 -2.75 16 3 C 0.27 6.13 5.41 -6.84 -0.04 6.09 16 4 N -0.57 -13.34 2.47 -177.95 -0.44 -13.78 16 5 C -0.27 -6.99 9.64 -15.06 -0.15 -7.13 16 6 H 0.08 1.91 7.93 -52.49 -0.42 1.49 16 7 C 0.01 0.26 4.82 -17.43 -0.08 0.17 16 8 N -0.88 -24.42 9.59 55.49 0.53 -23.88 16 9 Si 0.90 21.08 29.61 -169.99 -5.03 16.05 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.22 4.16 6.20 -5.20 -0.03 4.13 16 14 C -0.22 -3.87 6.17 -36.01 -0.22 -4.10 16 15 C 0.04 0.72 11.24 -19.14 -0.22 0.50 16 16 N -0.53 -9.35 9.88 -16.01 -0.16 -9.51 16 17 C 0.19 3.24 8.13 51.78 0.42 3.66 16 18 O -0.29 -4.35 10.56 -18.32 -0.19 -4.55 16 19 C 0.04 0.47 10.63 101.05 1.07 1.54 16 20 S 0.18 3.03 23.22 -107.50 -2.50 0.53 16 21 H 0.19 3.51 7.80 -54.10 -0.42 3.09 16 22 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 23 H 0.09 2.38 6.51 -51.93 -0.34 2.05 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.07 1.21 8.07 -51.92 -0.42 0.79 16 26 H 0.06 1.23 8.04 -51.93 -0.42 0.82 16 27 H 0.17 2.59 8.06 -52.49 -0.42 2.16 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 286.95 15.07 4.32 4.32 Total: -1.00 -29.54 286.95 -5.83 -35.37 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -3.26 Total: -0.72 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 0.90 Total: -3.84 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.07 Total: -47.17 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.19 Total: -4.55 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -2.50 Total: 0.53 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.54 -5.83 -35.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119982979.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.421 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds