Wall clock time and date at job start Sun Mar 29 2020 23:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34807 * 117.00080 * 2 1 4 4 O 1.21560 * 119.99867 * 0.02562 * 3 2 1 5 5 C 1.46993 * 120.00034 * 180.02562 * 3 2 1 6 6 C 1.40702 * 120.67392 * 89.97701 * 5 3 2 7 7 O 1.35500 * 120.89728 * 359.97438 * 6 5 3 8 8 C 1.42891 * 117.00351 * 179.97438 * 7 6 5 9 9 C 1.39169 * 118.21417 * 180.02562 * 6 5 3 10 10 C 1.38057 * 119.44740 * 0.02562 * 9 6 5 11 11 N 1.31942 * 121.34685 * 359.71959 * 10 9 6 12 12 C 1.32468 * 121.95802 * 0.57625 * 11 10 9 13 13 N 1.38185 * 119.80898 * 179.70533 * 12 11 10 14 14 C 1.36884 * 120.00232 * 359.72801 * 13 12 11 15 15 H 1.07999 * 119.99973 * 359.97438 * 14 13 12 16 16 C 1.38885 * 119.99795 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00271 * 359.71845 * 16 14 13 18 18 Si 1.86803 * 119.99585 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47085 * 89.99641 * 18 16 14 20 20 H 1.48497 * 109.46789 * 209.99651 * 18 16 14 21 21 H 1.48490 * 109.47245 * 329.99800 * 18 16 14 22 22 H 1.08995 * 109.47611 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47197 * 300.00263 * 1 2 3 24 24 H 1.08997 * 109.47201 * 59.99693 * 1 2 3 25 25 H 1.08999 * 109.46957 * 60.00099 * 8 7 6 26 26 H 1.09001 * 109.47317 * 180.02562 * 8 7 6 27 27 H 1.08998 * 109.47443 * 300.00282 * 8 7 6 28 28 H 1.07994 * 120.27277 * 180.02562 * 9 6 5 29 29 H 1.08000 * 119.32388 * 180.02562 * 10 9 6 30 30 H 0.97004 * 120.00305 * 179.72457 * 13 12 11 31 31 H 0.97000 * 119.99678 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4020 2.2206 0.0005 5 6 3.5319 1.2781 -0.0006 6 6 4.2483 1.3154 -1.2110 7 8 3.6037 1.2809 -2.4024 8 6 4.4128 1.3237 -3.5793 9 6 5.6369 1.3876 -1.1518 10 6 6.2630 1.4196 0.0782 11 7 5.5715 1.3885 1.2014 12 6 4.2489 1.3142 1.2088 13 7 3.5696 1.2783 2.4115 14 6 4.2635 1.3138 3.5909 15 1 5.3420 1.3696 3.5814 16 6 3.5807 1.2771 4.7997 17 7 2.2672 1.2138 4.8114 18 14 4.5278 1.3250 6.4092 19 1 4.7060 2.7358 6.8369 20 1 3.7719 0.5837 7.4505 21 1 5.8582 0.6935 6.2195 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 5.0884 0.4683 -3.5870 26 1 3.7733 1.2899 -4.4614 27 1 4.9940 2.2458 -3.5874 28 1 6.2196 1.4184 -2.0605 29 1 7.3407 1.4760 0.1218 30 1 2.6009 1.2279 2.4202 31 1 1.7903 1.1886 5.6557 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181886.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:03 Heat of formation + Delta-G solvation = -80.969971 kcal Electronic energy + Delta-G solvation = -18550.594722 eV Core-core repulsion = 15411.970013 eV Total energy + Delta-G solvation = -3138.624709 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.19572 -39.05130 -37.84307 -35.67494 -35.20755 -32.17822 -31.03439 -28.99821 -27.47825 -26.98692 -24.81990 -23.75393 -21.30670 -20.54469 -18.29552 -17.98807 -17.13361 -16.37623 -16.10505 -15.72715 -15.42067 -15.06639 -14.58475 -13.99416 -13.76838 -13.36082 -13.22275 -12.96703 -12.58422 -12.19352 -11.72537 -11.69028 -11.52983 -11.18653 -10.99798 -10.63822 -10.44136 -10.35500 -10.23432 -9.95708 -8.94494 -8.48874 -8.22230 -7.27556 -6.75718 -3.93967 1.94139 2.34760 2.82563 3.11738 3.12779 3.17896 3.46293 3.50578 3.96055 4.53615 4.71864 5.11105 5.21559 5.33791 5.45631 5.50358 5.54697 5.57533 5.65914 5.84299 5.89962 5.96104 6.30902 6.57539 6.76138 6.97749 7.06732 7.28962 7.58227 7.85741 8.41163 8.47718 8.82179 9.05530 9.50021 10.39119 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.007673 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.952758 B = 3648.192320 C = 4706.473225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.544 3.456 4 O -0.510 6.510 5 C -0.321 4.321 6 C 0.254 3.746 7 O -0.319 6.319 8 C 0.033 3.967 9 C -0.393 4.393 10 C 0.212 3.788 11 N -0.554 5.554 12 C 0.400 3.600 13 N -0.501 5.501 14 C -0.287 4.287 15 H 0.123 0.877 16 C 0.020 3.980 17 N -0.879 5.879 18 Si 0.944 3.056 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.263 1.263 22 H 0.095 0.905 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.122 0.878 29 H 0.145 0.855 30 H 0.406 0.594 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 -2.306 -9.841 10.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.271 6.271 3 C 0.387 3.613 4 O -0.397 6.397 5 C -0.334 4.334 6 C 0.201 3.799 7 O -0.230 6.230 8 C -0.062 4.062 9 C -0.421 4.421 10 C 0.042 3.958 11 N -0.274 5.274 12 C 0.153 3.847 13 N -0.101 5.101 14 C -0.417 4.417 15 H 0.140 0.860 16 C -0.185 4.185 17 N -0.514 5.514 18 Si 0.770 3.230 19 H -0.199 1.199 20 H -0.206 1.206 21 H -0.188 1.188 22 H 0.113 0.887 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.140 0.860 29 H 0.162 0.838 30 H 0.243 0.757 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.875 -2.009 -8.524 8.956 hybrid contribution -0.563 0.032 -0.227 0.608 sum 1.312 -1.977 -8.752 9.068 Atomic orbital electron populations 1.23184 0.77683 1.03021 1.02193 1.86753 1.22340 1.33886 1.84131 1.20897 0.88768 0.80918 0.70670 1.90782 1.67289 1.36299 1.45308 1.17835 0.88814 1.34740 0.91976 1.18580 0.90401 0.87958 0.82969 1.85929 1.36543 1.87693 1.12869 1.22988 0.96192 1.01617 0.85400 1.21131 0.92282 1.28770 0.99873 1.22040 0.98777 0.88321 0.86661 1.67229 1.05583 1.24708 1.29925 1.17469 0.87839 0.95661 0.83732 1.40977 1.08601 1.58124 1.02405 1.20156 0.94290 1.45713 0.81571 0.85974 1.25588 0.95882 0.96383 1.00673 1.69671 1.06758 1.45846 1.29130 0.85623 0.79315 0.78738 0.79365 1.19898 1.20570 1.18764 0.88684 0.91934 0.92443 0.92482 0.88864 0.92538 0.85968 0.83795 0.75732 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.57 101.05 1.07 1.61 16 2 O -0.35 -7.46 10.58 -40.78 -0.43 -7.89 16 3 C 0.54 12.75 5.76 34.28 0.20 12.94 16 4 O -0.51 -12.75 16.90 -19.31 -0.33 -13.08 16 5 C -0.32 -7.54 5.79 -104.52 -0.61 -8.14 16 6 C 0.25 5.16 6.74 -38.31 -0.26 4.91 16 7 O -0.32 -5.80 10.03 -18.19 -0.18 -5.98 16 8 C 0.03 0.40 9.83 101.05 0.99 1.39 16 9 C -0.39 -6.96 9.10 -39.30 -0.36 -7.32 16 10 C 0.21 3.95 11.15 -17.57 -0.20 3.76 16 11 N -0.55 -12.76 9.06 -12.24 -0.11 -12.87 16 12 C 0.40 9.92 7.45 -155.18 -1.16 8.76 16 13 N -0.50 -13.28 5.33 -10.96 -0.06 -13.34 16 14 C -0.29 -7.64 9.70 -15.06 -0.15 -7.78 16 15 H 0.12 3.21 7.07 -52.49 -0.37 2.83 16 16 C 0.02 0.52 5.50 -17.45 -0.10 0.42 16 17 N -0.88 -23.57 13.05 55.49 0.72 -22.85 16 18 Si 0.94 19.85 29.55 -169.99 -5.02 14.82 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.61 7.70 -51.93 -0.40 0.21 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.62 7.71 -51.93 -0.40 0.22 16 28 H 0.12 1.71 6.44 -52.49 -0.34 1.38 16 29 H 0.14 2.09 8.06 -52.49 -0.42 1.66 16 30 H 0.41 11.08 6.72 -40.82 -0.27 10.80 16 31 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 281.99 15.07 4.25 4.25 Total: -1.00 -31.31 281.99 -4.75 -36.06 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -3.03 Total: 10.33 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -0.56 Total: 10.55 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.55 Total: -49.06 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.94 Total: -26.95 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.31 -4.75 -36.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181886.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.912 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds