Wall clock time and date at job start Sun Mar 29 2020 23:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34807 * 117.00080 * 2 1 4 4 O 1.21560 * 119.99867 * 0.02562 * 3 2 1 5 5 C 1.46993 * 120.00034 * 180.02562 * 3 2 1 6 6 C 1.40702 * 120.67392 * 89.97701 * 5 3 2 7 7 O 1.35500 * 120.89728 * 359.97438 * 6 5 3 8 8 C 1.42891 * 117.00351 * 179.97438 * 7 6 5 9 9 C 1.39169 * 118.21417 * 180.02562 * 6 5 3 10 10 C 1.38057 * 119.44740 * 0.02562 * 9 6 5 11 11 N 1.31942 * 121.34685 * 359.71959 * 10 9 6 12 12 C 1.32468 * 121.95802 * 0.57625 * 11 10 9 13 13 N 1.38185 * 119.80898 * 179.70533 * 12 11 10 14 14 C 1.36884 * 120.00232 * 359.72801 * 13 12 11 15 15 H 1.07999 * 119.99973 * 359.97438 * 14 13 12 16 16 C 1.38885 * 119.99795 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00271 * 359.71845 * 16 14 13 18 18 Si 1.86803 * 119.99585 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47085 * 89.99641 * 18 16 14 20 20 H 1.48497 * 109.46789 * 209.99651 * 18 16 14 21 21 H 1.48490 * 109.47245 * 329.99800 * 18 16 14 22 22 H 1.08995 * 109.47611 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47197 * 300.00263 * 1 2 3 24 24 H 1.08997 * 109.47201 * 59.99693 * 1 2 3 25 25 H 1.08999 * 109.46957 * 60.00099 * 8 7 6 26 26 H 1.09001 * 109.47317 * 180.02562 * 8 7 6 27 27 H 1.08998 * 109.47443 * 300.00282 * 8 7 6 28 28 H 1.07994 * 120.27277 * 180.02562 * 9 6 5 29 29 H 1.08000 * 119.32388 * 180.02562 * 10 9 6 30 30 H 0.97004 * 120.00305 * 179.72457 * 13 12 11 31 31 H 0.97000 * 119.99678 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4020 2.2206 0.0005 5 6 3.5319 1.2781 -0.0006 6 6 4.2483 1.3154 -1.2110 7 8 3.6037 1.2809 -2.4024 8 6 4.4128 1.3237 -3.5793 9 6 5.6369 1.3876 -1.1518 10 6 6.2630 1.4196 0.0782 11 7 5.5715 1.3885 1.2014 12 6 4.2489 1.3142 1.2088 13 7 3.5696 1.2783 2.4115 14 6 4.2635 1.3138 3.5909 15 1 5.3420 1.3696 3.5814 16 6 3.5807 1.2771 4.7997 17 7 2.2672 1.2138 4.8114 18 14 4.5278 1.3250 6.4092 19 1 4.7060 2.7358 6.8369 20 1 3.7719 0.5837 7.4505 21 1 5.8582 0.6935 6.2195 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 5.0884 0.4683 -3.5870 26 1 3.7733 1.2899 -4.4614 27 1 4.9940 2.2458 -3.5874 28 1 6.2196 1.4184 -2.0605 29 1 7.3407 1.4760 0.1218 30 1 2.6009 1.2279 2.4202 31 1 1.7903 1.1886 5.6557 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181886.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:02 Heat of formation + Delta-G solvation = -102.445538 kcal Electronic energy + Delta-G solvation = -18551.525972 eV Core-core repulsion = 15411.970013 eV Total energy + Delta-G solvation = -3139.555960 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.86381 -40.66770 -39.40427 -37.41210 -36.94941 -33.98525 -32.66285 -30.67166 -28.76240 -28.30729 -26.60095 -25.37178 -22.94436 -22.22163 -20.11527 -19.54031 -18.79351 -18.03706 -17.80380 -17.35380 -16.67852 -16.62056 -16.34336 -15.51654 -15.29378 -14.97202 -14.91056 -14.46967 -14.14329 -13.67140 -13.35362 -13.14522 -13.04821 -12.53519 -12.50562 -12.33987 -12.08692 -11.98051 -11.83326 -11.67040 -10.74553 -10.16884 -9.81233 -9.02037 -8.59568 -5.90012 0.30702 0.71875 1.03657 1.41414 1.49411 1.56972 1.88452 2.10998 2.31561 2.80857 2.96665 3.30066 3.88748 4.11300 4.23529 4.25842 4.26591 4.36423 4.46924 4.49747 4.53342 4.63148 4.76661 4.99629 5.18126 5.29962 5.33738 5.56185 5.82995 6.39844 6.59617 6.67098 7.02471 7.23439 7.70800 8.57987 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.007673 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.952758 B = 3648.192320 C = 4706.473225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.364 6.364 3 C 0.545 3.455 4 O -0.539 6.539 5 C -0.354 4.354 6 C 0.250 3.750 7 O -0.337 6.337 8 C 0.018 3.982 9 C -0.361 4.361 10 C 0.208 3.792 11 N -0.584 5.584 12 C 0.401 3.599 13 N -0.537 5.537 14 C -0.312 4.312 15 H 0.117 0.883 16 C -0.028 4.028 17 N -0.925 5.925 18 Si 1.012 2.988 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.256 1.256 22 H 0.136 0.864 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.120 0.880 27 H 0.072 0.928 28 H 0.173 0.827 29 H 0.194 0.806 30 H 0.394 0.606 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.271 -2.718 -12.149 13.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.280 6.280 3 C 0.390 3.610 4 O -0.429 6.429 5 C -0.367 4.367 6 C 0.196 3.804 7 O -0.249 6.249 8 C -0.075 4.075 9 C -0.388 4.388 10 C 0.043 3.957 11 N -0.307 5.307 12 C 0.157 3.843 13 N -0.140 5.140 14 C -0.442 4.442 15 H 0.135 0.865 16 C -0.228 4.228 17 N -0.563 5.563 18 Si 0.834 3.166 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.180 1.180 22 H 0.154 0.846 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.138 0.862 27 H 0.091 0.909 28 H 0.190 0.810 29 H 0.211 0.789 30 H 0.228 0.772 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.013 -2.437 -10.930 11.896 hybrid contribution -1.108 0.136 -0.043 1.117 sum 2.906 -2.301 -10.973 11.582 Atomic orbital electron populations 1.23574 0.75085 1.05810 1.02317 1.86713 1.24978 1.32743 1.83527 1.21020 0.89082 0.81093 0.69842 1.90744 1.67940 1.37234 1.46977 1.18217 0.89253 1.35984 0.93217 1.18788 0.91272 0.87169 0.83186 1.85928 1.38420 1.87078 1.13463 1.23479 0.97079 1.03280 0.83661 1.21720 0.91376 1.24138 1.01518 1.22961 1.00887 0.85995 0.85874 1.67311 1.04893 1.26144 1.32326 1.17897 0.88823 0.93780 0.83824 1.40945 1.07892 1.62148 1.02983 1.20254 0.94136 1.47374 0.82397 0.86486 1.26491 0.96699 0.96043 1.03588 1.69776 1.08173 1.48667 1.29663 0.84632 0.78126 0.78689 0.75158 1.19601 1.20097 1.17960 0.84583 0.92969 0.91209 0.90475 0.86164 0.90922 0.80997 0.78942 0.77163 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.57 113.37 1.20 2.01 16 2 O -0.36 -15.52 10.58 -57.19 -0.60 -16.12 16 3 C 0.54 26.15 5.76 70.12 0.40 26.55 16 4 O -0.54 -27.88 16.90 19.64 0.33 -27.55 16 5 C -0.35 -16.71 5.79 -19.80 -0.11 -16.82 16 6 C 0.25 9.59 6.74 23.10 0.16 9.75 16 7 O -0.34 -11.32 10.03 -88.01 -0.88 -12.20 16 8 C 0.02 0.36 9.83 113.37 1.11 1.47 16 9 C -0.36 -11.19 9.10 22.45 0.20 -10.98 16 10 C 0.21 7.04 11.15 84.63 0.94 7.98 16 11 N -0.58 -26.49 9.06 -192.64 -1.75 -28.24 16 12 C 0.40 20.28 7.45 133.69 1.00 21.28 16 13 N -0.54 -29.86 5.33 -188.57 -1.01 -30.87 16 14 C -0.31 -17.36 9.70 84.06 0.82 -16.54 16 15 H 0.12 6.37 7.07 -2.91 -0.02 6.35 16 16 C -0.03 -1.52 5.50 84.90 0.47 -1.05 16 17 N -0.93 -52.26 13.05 21.66 0.28 -51.98 16 18 Si 1.01 41.93 29.55 68.60 2.03 43.96 16 19 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 20 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 22 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 23 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.08 1.21 7.70 -2.39 -0.02 1.19 16 26 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 1.20 7.71 -2.39 -0.02 1.18 16 28 H 0.17 3.61 6.44 -2.91 -0.02 3.59 16 29 H 0.19 4.54 8.06 -2.91 -0.02 4.51 16 30 H 0.39 22.97 6.72 -92.71 -0.62 22.35 16 31 H 0.28 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -72.62 281.99 5.14 -67.48 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.55 Total: 31.87 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: 6.18 Total: 23.64 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -2.47 Total: -111.09 kcal Atomic # 8 Polarization: -54.72 SS G_CDS: -1.16 Total: -55.87 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -72.62 5.14 -67.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181886.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.962 kcal (2) G-P(sol) polarization free energy of solvation -72.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds