Wall clock time and date at job start Sun Mar 29 2020 23:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42898 * 109.46906 * 2 1 4 4 C 1.35875 * 116.99906 * 180.02562 * 3 2 1 5 5 C 1.38586 * 120.10754 * 0.02732 * 4 3 2 6 6 C 1.38203 * 120.03713 * 179.97438 * 5 4 3 7 7 N 1.48014 * 119.87483 * 179.97438 * 6 5 4 8 8 O 1.31695 * 120.00160 * 0.02562 * 7 6 5 9 9 O 1.31704 * 119.99586 * 180.02562 * 7 6 5 10 10 C 1.38412 * 120.24239 * 359.97438 * 6 5 4 11 11 C 1.38029 * 120.21527 * 0.04546 * 10 6 5 12 12 C 1.39052 * 119.96268 * 359.95274 * 11 10 6 13 13 N 1.39192 * 120.12275 * 180.29732 * 12 11 10 14 14 C 1.32582 * 119.99896 * 354.34717 * 13 12 11 15 15 H 1.07996 * 119.99918 * 5.13353 * 14 13 12 16 16 C 1.46771 * 119.99775 * 185.13022 * 14 13 12 17 17 N 1.29348 * 120.00144 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99823 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47058 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46982 * 120.00173 * 18 16 14 21 21 H 1.48499 * 109.47354 * 240.00103 * 18 16 14 22 22 H 1.09000 * 109.47350 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47205 * 299.99175 * 1 2 3 24 24 H 1.09000 * 109.47689 * 59.99572 * 1 2 3 25 25 H 1.09002 * 109.46928 * 240.00383 * 2 1 3 26 26 H 1.09000 * 109.47689 * 120.00428 * 2 1 3 27 27 H 1.08006 * 119.97698 * 359.95269 * 5 4 3 28 28 H 1.08002 * 119.88957 * 180.02562 * 10 6 5 29 29 H 1.07995 * 120.02084 * 180.02562 * 11 10 6 30 30 H 0.97002 * 119.99885 * 174.34115 * 13 12 11 31 31 H 0.96996 * 119.99962 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3533 1.5253 -0.0005 5 6 4.1996 0.4279 -0.0016 6 6 5.5694 0.6107 -0.0027 7 7 6.4700 -0.5640 -0.0033 8 8 5.9655 -1.7805 -0.0033 9 8 7.7758 -0.3925 -0.0038 10 6 6.1023 1.8881 -0.0033 11 6 5.2689 2.9884 -0.0018 12 6 3.8892 2.8146 -0.0007 13 7 3.0457 3.9218 -0.0055 14 6 3.5529 5.1420 0.1021 15 1 4.6236 5.2830 0.1099 16 6 2.6592 6.3012 0.2105 17 7 1.3768 6.1323 0.2016 18 14 3.3738 8.0204 0.3628 19 1 4.8567 7.9430 0.3490 20 1 2.9113 8.8514 -0.7776 21 1 2.9214 8.6334 1.6375 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.7882 -0.5708 -0.0013 28 1 7.1737 2.0244 -0.0045 29 1 5.6880 3.9837 -0.0026 30 1 2.0868 3.8006 -0.0876 31 1 0.7862 6.8984 0.2736 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183146.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:31 Heat of formation + Delta-G solvation = -1.655143 kcal Electronic energy + Delta-G solvation = -18005.946501 eV Core-core repulsion = 14870.761141 eV Total energy + Delta-G solvation = -3135.185360 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.80320 -37.61428 -37.25908 -35.42967 -33.40754 -32.66122 -31.54297 -29.46523 -28.75067 -26.04940 -24.05421 -23.52162 -21.36643 -20.76760 -19.04536 -18.07316 -17.05124 -16.46551 -15.82301 -15.72348 -15.66866 -15.09413 -14.30373 -14.27699 -13.59064 -13.34334 -12.96848 -12.82192 -12.46577 -12.40059 -11.97398 -11.77924 -11.63410 -11.07554 -10.92829 -10.85580 -10.54978 -10.31187 -9.87357 -9.67560 -9.46321 -9.27800 -8.10178 -8.01651 -7.34790 -4.29274 0.55847 2.22155 2.31193 2.50597 2.60904 2.64943 2.98245 3.15570 3.62744 3.74286 4.28390 4.51718 5.15255 5.20779 5.47747 5.48880 5.67764 5.73958 5.91573 5.96722 5.98306 6.15929 6.21126 6.35280 6.43447 6.67722 6.88771 7.10972 7.23227 7.25842 7.64858 7.86381 8.26248 8.35609 8.58369 9.02861 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.006617 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.390280 B = 4230.382711 C = 5652.010793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.323 6.323 4 C 0.052 3.948 5 C -0.125 4.125 6 C -0.107 4.107 7 N 0.048 4.952 8 O -0.342 6.342 9 O -0.338 6.338 10 C -0.018 4.018 11 C -0.193 4.193 12 C 0.102 3.898 13 N -0.412 5.412 14 C -0.272 4.272 15 H 0.140 0.860 16 C 0.038 3.962 17 N -0.771 5.771 18 Si 0.955 3.045 19 H -0.247 1.247 20 H -0.263 1.263 21 H -0.263 1.263 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.414 0.586 31 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.613 5.685 -0.007 8.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.238 6.238 4 C 0.003 3.997 5 C -0.149 4.149 6 C -0.214 4.214 7 N 0.459 4.541 8 O -0.488 6.488 9 O -0.485 6.485 10 C -0.041 4.041 11 C -0.218 4.218 12 C -0.030 4.030 13 N 0.002 4.998 14 C -0.411 4.411 15 H 0.157 0.843 16 C -0.186 4.186 17 N -0.395 5.395 18 Si 0.776 3.224 19 H -0.170 1.170 20 H -0.188 1.188 21 H -0.187 1.187 22 H 0.092 0.908 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.251 0.749 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.140 6.238 0.012 9.481 hybrid contribution -0.007 -0.005 0.021 0.023 sum -7.146 6.233 0.033 9.483 Atomic orbital electron populations 1.21753 0.93366 1.02341 1.03204 1.22633 0.95074 0.82549 1.01451 1.85864 1.19031 1.28630 1.90310 1.17720 0.81544 0.91548 1.08893 1.19989 0.91294 0.97754 1.05866 1.18896 0.87940 0.83225 1.31302 1.49708 1.02327 1.03061 0.98998 1.96063 1.80059 1.06767 1.65950 1.96074 0.92387 1.94268 1.65772 1.20273 0.99798 0.89521 0.94471 1.19834 0.89690 0.97910 1.14347 1.16993 0.90376 0.83239 1.12355 1.40503 1.10199 1.04398 1.44676 1.21833 0.96157 0.81962 1.41144 0.84297 1.27668 0.94474 1.03242 0.93265 1.68648 1.04711 1.37261 1.28898 0.85356 0.81064 0.76440 0.79569 1.16996 1.18776 1.18743 0.90789 0.91751 0.91777 0.92312 0.92299 0.85273 0.85498 0.84983 0.74933 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 37.16 0.38 -1.35 16 2 C 0.06 0.86 5.46 37.16 0.20 1.07 16 3 O -0.32 -5.87 9.39 -19.35 -0.18 -6.05 16 4 C 0.05 1.04 6.71 -38.94 -0.26 0.78 16 5 C -0.13 -2.69 8.56 -39.47 -0.34 -3.03 16 6 C -0.11 -2.50 6.89 -79.90 -0.55 -3.05 16 7 N 0.05 1.28 4.98 33.99 0.17 1.45 16 8 O -0.34 -9.41 19.14 -31.56 -0.60 -10.01 16 9 O -0.34 -9.27 19.14 -31.57 -0.60 -9.88 16 10 C -0.02 -0.38 9.56 -39.59 -0.38 -0.76 16 11 C -0.19 -3.73 9.29 -39.36 -0.37 -4.09 16 12 C 0.10 2.03 6.61 -83.70 -0.55 1.48 16 13 N -0.41 -7.90 5.27 -8.32 -0.04 -7.94 16 14 C -0.27 -4.98 9.79 -13.78 -0.13 -5.11 16 15 H 0.14 2.36 5.73 -52.49 -0.30 2.06 16 16 C 0.04 0.66 5.69 -15.15 -0.09 0.57 16 17 N -0.77 -13.90 13.09 56.00 0.73 -13.17 16 18 Si 0.96 12.97 29.65 -169.99 -5.04 7.94 16 19 H -0.25 -3.33 7.11 56.52 0.40 -2.93 16 20 H -0.26 -3.59 7.11 56.52 0.40 -3.19 16 21 H -0.26 -3.61 7.11 56.52 0.40 -3.21 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.85 7.66 -51.93 -0.40 0.46 16 26 H 0.06 0.86 7.66 -51.93 -0.40 0.46 16 27 H 0.13 2.68 5.81 -52.48 -0.30 2.38 16 28 H 0.13 2.53 7.57 -52.49 -0.40 2.13 16 29 H 0.13 2.24 5.98 -52.49 -0.31 1.93 16 30 H 0.41 8.03 7.35 -40.82 -0.30 7.73 16 31 H 0.31 4.93 8.26 -40.82 -0.34 4.60 16 LS Contribution 281.27 15.07 4.24 4.24 Total: -1.00 -27.39 281.27 -6.23 -33.62 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -2.81 Total: 13.31 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -2.08 Total: -13.50 kcal Atomic # 7 Polarization: -20.52 SS G_CDS: 0.86 Total: -19.66 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -1.39 Total: -25.94 kcal Atomic # 14 Polarization: 12.97 SS G_CDS: -5.04 Total: 7.94 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.39 -6.23 -33.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183146.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.967 kcal (2) G-P(sol) polarization free energy of solvation -27.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds