Wall clock time and date at job start Sun Mar 29 2020 23:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45199 * 109.46940 * 2 1 4 4 C 1.34706 * 117.00087 * 180.02562 * 3 2 1 5 5 O 1.21466 * 119.99728 * 0.02562 * 4 3 2 6 6 C 1.47746 * 120.00093 * 179.97438 * 4 3 2 7 7 C 1.39915 * 120.51174 * 180.02562 * 6 4 3 8 8 C 1.39194 * 118.22750 * 179.97438 * 7 6 4 9 9 N 1.39355 * 120.42859 * 179.97438 * 8 7 6 10 10 C 1.36841 * 120.00403 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99707 * 0.02562 * 10 9 8 12 12 C 1.38794 * 120.00155 * 179.97438 * 10 9 8 13 13 N 1.31589 * 119.99867 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00077 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47072 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46778 * 120.00270 * 14 12 10 17 17 H 1.48492 * 109.47555 * 240.00403 * 14 12 10 18 18 C 1.39169 * 119.14523 * 359.97438 * 8 7 6 19 19 N 1.31918 * 120.95419 * 359.97438 * 18 8 7 20 20 O 1.41605 * 119.02301 * 180.02562 * 19 18 8 21 21 C 1.31840 * 121.95730 * 0.04109 * 19 18 8 22 22 H 1.09000 * 109.47357 * 59.99727 * 1 2 3 23 23 H 1.09002 * 109.46721 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47185 * 299.99638 * 1 2 3 25 25 H 1.08997 * 109.46831 * 240.00015 * 2 1 3 26 26 H 1.08994 * 109.47369 * 119.99798 * 2 1 3 27 27 H 1.08001 * 120.88412 * 359.70490 * 7 6 4 28 28 H 0.97005 * 119.99395 * 359.97438 * 9 8 7 29 29 H 0.97001 * 120.00112 * 180.02562 * 13 12 10 30 30 H 1.07998 * 119.52197 * 179.97438 * 18 8 7 31 31 H 1.07995 * 119.63501 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3494 1.5455 -0.0005 5 8 4.0893 0.5822 -0.0015 6 6 3.9141 2.9108 -0.0011 7 6 5.2995 3.1066 -0.0022 8 6 5.7798 4.4130 -0.0033 9 7 7.1511 4.6608 -0.0039 10 6 7.6138 5.9487 -0.0055 11 1 6.9160 6.7731 -0.0059 12 6 8.9796 6.1954 -0.0055 13 7 9.8296 5.1909 -0.0046 14 14 9.6111 7.9534 -0.0070 15 1 8.4608 8.8926 -0.0073 16 1 10.4372 8.1836 1.2054 17 1 10.4373 8.1817 -1.2195 18 6 4.8728 5.4686 -0.0038 19 7 3.5726 5.2460 -0.0038 20 8 2.6864 6.3505 -0.0049 21 6 3.0735 4.0257 -0.0025 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 5.9781 2.2664 0.0021 28 1 7.7777 3.9203 -0.0032 29 1 10.7842 5.3633 -0.0042 30 1 5.2388 6.4847 -0.0042 31 1 2.0026 3.8867 -0.0021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183515.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:02 Heat of formation + Delta-G solvation = -51.430915 kcal Electronic energy + Delta-G solvation = -17715.980714 eV Core-core repulsion = 14578.636914 eV Total energy + Delta-G solvation = -3137.343800 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.17431 -41.10023 -38.17729 -37.75174 -35.22946 -34.13552 -32.54693 -31.26452 -30.49040 -27.50624 -26.09705 -24.44858 -23.79966 -22.23382 -20.35287 -19.65020 -18.70048 -17.71123 -17.62964 -17.38270 -16.91888 -16.57372 -16.15651 -15.98539 -15.59780 -15.02693 -14.61506 -14.01819 -13.89003 -13.58348 -13.34698 -13.01301 -12.94332 -12.80039 -12.47407 -12.34239 -12.11441 -11.83864 -11.67035 -11.48844 -10.94489 -10.55135 -9.90455 -9.20748 -8.84867 -6.03386 -0.68099 0.03142 1.24792 1.36629 1.45023 1.48452 1.56354 1.88494 2.13452 2.39348 2.91446 2.93911 3.53143 3.74899 3.78702 3.89221 4.08405 4.12531 4.31600 4.42135 4.55686 4.78725 4.90380 4.96142 4.99061 5.11269 5.13787 5.40022 5.41860 6.16054 6.24313 6.43599 6.58002 6.89186 7.11420 8.28679 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.035641 B = 0.004831 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.423118 B = 5794.756203 C = 6559.733754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.352 6.352 4 C 0.537 3.463 5 O -0.516 6.516 6 C -0.071 4.071 7 C -0.101 4.101 8 C 0.164 3.836 9 N -0.504 5.504 10 C -0.326 4.326 11 H 0.116 0.884 12 C 0.000 4.000 13 N -0.884 5.884 14 Si 1.001 2.999 15 H -0.260 1.260 16 H -0.270 1.270 17 H -0.270 1.270 18 C -0.047 4.047 19 N -0.072 5.072 20 O -0.630 6.630 21 C -0.026 4.026 22 H 0.067 0.933 23 H 0.105 0.895 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.167 0.833 28 H 0.413 0.587 29 H 0.292 0.708 30 H 0.163 0.837 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.321 -10.023 0.015 11.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.268 6.268 4 C 0.381 3.619 5 O -0.406 6.406 6 C -0.075 4.075 7 C -0.131 4.131 8 C 0.036 3.964 9 N -0.100 5.100 10 C -0.455 4.455 11 H 0.133 0.867 12 C -0.206 4.206 13 N -0.517 5.517 14 Si 0.822 3.178 15 H -0.184 1.184 16 H -0.195 1.195 17 H -0.195 1.195 18 C -0.204 4.204 19 N 0.251 4.749 20 O -0.684 6.684 21 C -0.179 4.179 22 H 0.086 0.914 23 H 0.123 0.877 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.184 0.816 28 H 0.251 0.749 29 H 0.102 0.898 30 H 0.180 0.820 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.872 -9.818 0.014 11.440 hybrid contribution 0.688 0.572 0.001 0.895 sum -5.184 -9.245 0.015 10.600 Atomic orbital electron populations 1.21855 0.90416 1.04535 1.03720 1.23448 0.97062 0.78261 1.03317 1.86583 1.22136 1.34662 1.83429 1.20325 0.81262 0.88015 0.72289 1.90823 1.60990 1.42104 1.46724 1.18763 0.92608 0.90013 1.06148 1.21179 0.94106 0.95597 1.02171 1.17397 0.85135 0.91879 1.02030 1.41118 1.01338 1.09284 1.58248 1.20358 0.92786 0.84290 1.48083 0.86665 1.26306 0.95370 1.04421 0.94495 1.69712 1.04853 1.33694 1.43413 0.84716 0.78769 0.75727 0.78542 1.18363 1.19521 1.19513 1.21503 0.82026 1.01330 1.15558 1.42305 1.05308 1.07272 1.20034 1.97502 1.51559 1.26815 1.92478 1.21958 1.01456 0.81708 1.12748 0.91403 0.87672 0.91408 0.90505 0.90502 0.81577 0.74908 0.89812 0.81999 0.80085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.29 71.98 0.74 -1.18 16 2 C 0.05 0.97 6.19 71.98 0.45 1.41 16 3 O -0.35 -9.12 9.49 -56.16 -0.53 -9.65 16 4 C 0.54 16.16 7.91 70.34 0.56 16.71 16 5 O -0.52 -16.74 16.20 19.95 0.32 -16.42 16 6 C -0.07 -2.38 5.89 -20.02 -0.12 -2.50 16 7 C -0.10 -3.46 9.58 22.91 0.22 -3.24 16 8 C 0.16 6.43 6.63 38.40 0.25 6.68 16 9 N -0.50 -20.70 5.44 -184.10 -1.00 -21.70 16 10 C -0.33 -14.34 9.57 84.04 0.80 -13.53 16 11 H 0.12 5.02 5.70 -2.91 -0.02 5.00 16 12 C 0.00 0.01 5.50 84.86 0.47 0.48 16 13 N -0.88 -39.67 13.05 21.65 0.28 -39.39 16 14 Si 1.00 34.95 29.55 68.60 2.03 36.98 16 15 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 16 H -0.27 -9.28 7.11 99.48 0.71 -8.57 16 17 H -0.27 -9.27 7.11 99.48 0.71 -8.57 16 18 C -0.05 -2.08 9.97 84.90 0.85 -1.23 16 19 N -0.07 -3.36 3.57 -193.94 -0.69 -4.06 16 20 O -0.63 -36.16 20.05 -38.80 -0.78 -36.94 16 21 C -0.03 -0.98 10.28 85.03 0.87 -0.11 16 22 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.17 4.99 7.73 -2.91 -0.02 4.97 16 28 H 0.41 16.60 7.91 -92.70 -0.73 15.86 16 29 H 0.29 12.21 8.31 -92.71 -0.77 11.44 16 30 H 0.16 7.29 5.96 -2.91 -0.02 7.27 16 31 H 0.18 6.34 7.61 -2.91 -0.02 6.32 16 Total: -1.00 -62.22 284.42 5.16 -57.06 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 0.44 Total: 30.62 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 5.09 Total: 3.51 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -1.41 Total: -65.15 kcal Atomic # 8 Polarization: -62.03 SS G_CDS: -0.99 Total: -63.01 kcal Atomic # 14 Polarization: 34.95 SS G_CDS: 2.03 Total: 36.98 kcal Total: -62.22 5.16 -57.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183515.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.625 kcal (2) G-P(sol) polarization free energy of solvation -62.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds