Wall clock time and date at job start Sun Mar 29 2020 23:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35873 * 117.00063 * 2 1 4 4 C 1.38580 * 120.10497 * 0.02562 * 3 2 1 5 5 C 1.38204 * 120.03216 * 179.97438 * 4 3 2 6 6 C 1.50705 * 119.87450 * 179.97438 * 5 4 3 7 7 C 1.38411 * 120.24982 * 359.97438 * 5 4 3 8 8 N 1.48016 * 119.89670 * 179.97438 * 7 5 4 9 9 O 1.31701 * 119.99982 * 216.75624 * 8 7 5 10 10 O 1.31698 * 119.99882 * 36.76391 * 8 7 5 11 11 C 1.38042 * 120.20689 * 359.97438 * 7 5 4 12 12 C 1.39046 * 119.96141 * 359.76860 * 11 7 5 13 13 N 1.39195 * 120.12184 * 180.25518 * 12 11 7 14 14 C 1.32580 * 119.99753 * 6.03816 * 13 12 11 15 15 H 1.08002 * 120.00280 * 353.53284 * 14 13 12 16 16 C 1.46769 * 119.99970 * 173.52890 * 14 13 12 17 17 N 1.29343 * 119.99980 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00090 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47270 * 90.00375 * 18 16 14 20 20 H 1.48504 * 109.47340 * 210.00247 * 18 16 14 21 21 H 1.48502 * 109.47103 * 330.00163 * 18 16 14 22 22 H 1.09004 * 109.47275 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47047 * 59.99640 * 1 2 3 24 24 H 1.09001 * 109.47241 * 300.00198 * 1 2 3 25 25 H 1.08003 * 119.98617 * 359.97438 * 4 3 2 26 26 H 1.09001 * 109.46568 * 95.35651 * 6 5 4 27 27 H 1.09001 * 109.46935 * 215.35274 * 6 5 4 28 28 H 1.08996 * 109.47132 * 335.35567 * 6 5 4 29 29 H 1.07998 * 120.01740 * 179.97438 * 11 7 5 30 30 H 0.97001 * 120.00176 * 186.04188 * 13 12 11 31 31 H 0.96994 * 120.00404 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2932 2.3743 0.0005 5 6 1.9222 3.6048 0.0011 6 6 1.1003 4.8680 0.0011 7 6 3.3042 3.6815 0.0016 8 7 3.9697 5.0036 0.0016 9 8 5.0823 5.1808 -0.6805 10 8 3.4494 6.0028 0.6838 11 6 4.0638 2.5289 0.0021 12 6 3.4400 1.2862 0.0070 13 7 4.2026 0.1218 0.0129 14 6 5.5209 0.1934 0.1347 15 1 6.0127 1.1549 0.1243 16 6 6.3119 -1.0339 0.2838 17 7 5.7229 -2.1854 0.2959 18 14 8.1691 -0.9329 0.4562 19 1 8.5277 -0.8233 1.8930 20 1 8.7866 -2.1562 -0.1162 21 1 8.6696 0.2610 -0.2714 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 0.5139 0.8900 25 1 0.2146 2.3195 0.0005 26 1 0.9822 5.2246 1.0243 27 1 1.6049 5.6298 -0.5932 28 1 0.1194 4.6632 -0.4279 29 1 5.1419 2.5923 0.0021 30 1 3.7696 -0.7421 -0.0721 31 1 6.2456 -2.9965 0.3941 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186911.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:02 Heat of formation + Delta-G solvation = 14.607927 kcal Electronic energy + Delta-G solvation = -18292.726493 eV Core-core repulsion = 15158.246352 eV Total energy + Delta-G solvation = -3134.480140 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.94741 -38.37558 -37.00383 -35.74828 -33.75099 -32.91050 -30.59791 -30.15470 -27.52722 -26.50285 -25.30365 -23.64672 -21.59432 -20.72430 -18.59845 -17.92504 -17.34142 -17.21788 -16.07292 -15.40742 -15.32718 -15.00290 -14.24060 -14.12484 -13.72194 -13.23506 -13.07035 -12.54496 -12.41878 -12.19793 -11.91063 -11.55456 -11.49874 -10.92707 -10.86302 -10.67554 -10.54929 -10.46350 -10.39441 -10.21957 -9.97042 -9.26772 -8.21994 -7.21138 -7.08588 -3.83404 0.23357 1.94765 1.99294 2.03842 2.90449 2.93569 2.96958 3.66982 3.71302 4.02933 4.65165 4.79000 5.17603 5.32571 5.37937 5.48513 5.56090 5.68907 5.90430 6.05855 6.08178 6.22461 6.25639 6.41469 6.58833 6.67463 6.78778 6.93920 7.11537 7.28562 7.54709 7.86566 8.05717 8.87521 9.15159 9.90409 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.007938 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.203691 B = 3526.598163 C = 5027.511889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.317 6.317 3 C 0.055 3.945 4 C -0.145 4.145 5 C -0.157 4.157 6 C -0.091 4.091 7 C 0.056 3.944 8 N -0.008 5.008 9 O -0.194 6.194 10 O -0.187 6.187 11 C -0.176 4.176 12 C 0.149 3.851 13 N -0.484 5.484 14 C -0.336 4.336 15 H 0.116 0.884 16 C 0.039 3.961 17 N -0.827 5.827 18 Si 0.939 3.061 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.257 1.257 22 H 0.092 0.908 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.127 0.873 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.140 0.860 30 H 0.408 0.592 31 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.044 0.995 -0.224 7.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.231 6.231 3 C 0.005 3.995 4 C -0.167 4.167 5 C -0.165 4.165 6 C -0.148 4.148 7 C -0.030 4.030 8 N 0.471 4.529 9 O -0.387 6.387 10 O -0.382 6.382 11 C -0.204 4.204 12 C 0.022 3.978 13 N -0.076 5.076 14 C -0.468 4.468 15 H 0.133 0.867 16 C -0.177 4.177 17 N -0.455 5.455 18 Si 0.763 3.237 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.180 1.180 22 H 0.111 0.889 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.145 0.855 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.157 0.843 30 H 0.244 0.756 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.853 -0.264 -0.199 6.861 hybrid contribution 0.631 0.034 0.045 0.633 sum -6.223 -0.230 -0.154 6.229 Atomic orbital electron populations 1.22915 0.79298 1.03111 1.00892 1.85954 1.20556 1.27023 1.89527 1.18401 0.90272 0.84248 1.06593 1.20241 0.98463 0.89948 1.08023 1.18390 0.89468 0.95623 1.13033 1.20550 0.98085 0.94026 1.02145 1.19617 0.91390 0.78369 1.13597 1.50655 1.00749 1.04462 0.97051 1.96224 1.09517 1.91764 1.41219 1.96169 1.67267 1.33976 1.40825 1.19469 0.99764 0.87681 1.13498 1.16444 0.86474 0.87100 1.07816 1.39689 1.06084 1.05467 1.56396 1.20815 0.82329 0.94598 1.49068 0.86684 1.27065 1.02217 0.93641 0.94753 1.68652 1.40011 0.99315 1.37496 0.85690 0.79236 0.79183 0.79633 1.19296 1.20018 1.18045 0.88920 0.93142 0.93094 0.85506 0.91404 0.92664 0.92630 0.84288 0.75550 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.32 -5.66 9.75 -19.34 -0.19 -5.85 16 3 C 0.05 1.07 6.71 -38.94 -0.26 0.81 16 4 C -0.15 -2.54 8.66 -39.47 -0.34 -2.89 16 5 C -0.16 -2.98 5.88 -104.57 -0.61 -3.60 16 6 C -0.09 -1.47 8.58 36.01 0.31 -1.16 16 7 C 0.06 1.20 6.54 -79.96 -0.52 0.68 16 8 N -0.01 -0.17 4.61 33.96 0.16 -0.01 16 9 O -0.19 -4.41 19.67 -31.57 -0.62 -5.03 16 10 O -0.19 -3.98 17.39 -31.57 -0.55 -4.53 16 11 C -0.18 -3.92 8.92 -39.35 -0.35 -4.27 16 12 C 0.15 3.28 6.61 -83.70 -0.55 2.72 16 13 N -0.48 -11.24 5.27 -8.32 -0.04 -11.29 16 14 C -0.34 -8.03 9.79 -13.78 -0.13 -8.16 16 15 H 0.12 2.71 5.73 -52.49 -0.30 2.41 16 16 C 0.04 0.90 5.69 -15.15 -0.09 0.81 16 17 N -0.83 -19.43 13.09 56.00 0.73 -18.70 16 18 Si 0.94 17.81 29.65 -169.99 -5.04 12.77 16 19 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 20 H -0.28 -5.10 7.11 56.52 0.40 -4.69 16 21 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 22 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 24 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 25 H 0.13 1.79 6.30 -52.48 -0.33 1.46 16 26 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 27 H 0.05 0.94 6.84 -51.93 -0.36 0.58 16 28 H 0.05 0.74 8.05 -51.93 -0.42 0.32 16 29 H 0.14 3.16 5.93 -52.49 -0.31 2.84 16 30 H 0.41 9.59 7.36 -40.82 -0.30 9.28 16 31 H 0.29 6.30 8.26 -40.82 -0.34 5.96 16 LS Contribution 277.98 15.07 4.19 4.19 Total: -1.00 -25.91 277.98 -5.72 -31.62 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -2.79 Total: 10.47 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -1.57 Total: -13.65 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 0.85 Total: -30.00 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -1.36 Total: -15.41 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.04 Total: 12.77 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -25.91 -5.72 -31.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186911.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.233 kcal (2) G-P(sol) polarization free energy of solvation -25.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds