Wall clock time and date at job start Sun Mar 29 2020 23:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35873 * 117.00063 * 2 1 4 4 C 1.38580 * 120.10497 * 0.02562 * 3 2 1 5 5 C 1.38204 * 120.03216 * 179.97438 * 4 3 2 6 6 C 1.50705 * 119.87450 * 179.97438 * 5 4 3 7 7 C 1.38411 * 120.24982 * 359.97438 * 5 4 3 8 8 N 1.48016 * 119.89670 * 179.97438 * 7 5 4 9 9 O 1.31701 * 119.99982 * 216.75624 * 8 7 5 10 10 O 1.31698 * 119.99882 * 36.76391 * 8 7 5 11 11 C 1.38042 * 120.20689 * 359.97438 * 7 5 4 12 12 C 1.39046 * 119.96141 * 359.76860 * 11 7 5 13 13 N 1.39195 * 120.12184 * 180.25518 * 12 11 7 14 14 C 1.32580 * 119.99753 * 6.03816 * 13 12 11 15 15 H 1.08002 * 120.00280 * 353.53284 * 14 13 12 16 16 C 1.46769 * 119.99970 * 173.52890 * 14 13 12 17 17 N 1.29343 * 119.99980 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00090 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47270 * 90.00375 * 18 16 14 20 20 H 1.48504 * 109.47340 * 210.00247 * 18 16 14 21 21 H 1.48502 * 109.47103 * 330.00163 * 18 16 14 22 22 H 1.09004 * 109.47275 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47047 * 59.99640 * 1 2 3 24 24 H 1.09001 * 109.47241 * 300.00198 * 1 2 3 25 25 H 1.08003 * 119.98617 * 359.97438 * 4 3 2 26 26 H 1.09001 * 109.46568 * 95.35651 * 6 5 4 27 27 H 1.09001 * 109.46935 * 215.35274 * 6 5 4 28 28 H 1.08996 * 109.47132 * 335.35567 * 6 5 4 29 29 H 1.07998 * 120.01740 * 179.97438 * 11 7 5 30 30 H 0.97001 * 120.00176 * 186.04188 * 13 12 11 31 31 H 0.96994 * 120.00404 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2932 2.3743 0.0005 5 6 1.9222 3.6048 0.0011 6 6 1.1003 4.8680 0.0011 7 6 3.3042 3.6815 0.0016 8 7 3.9697 5.0036 0.0016 9 8 5.0823 5.1808 -0.6805 10 8 3.4494 6.0028 0.6838 11 6 4.0638 2.5289 0.0021 12 6 3.4400 1.2862 0.0070 13 7 4.2026 0.1218 0.0129 14 6 5.5209 0.1934 0.1347 15 1 6.0127 1.1549 0.1243 16 6 6.3119 -1.0339 0.2838 17 7 5.7229 -2.1854 0.2959 18 14 8.1691 -0.9329 0.4562 19 1 8.5277 -0.8233 1.8930 20 1 8.7866 -2.1562 -0.1162 21 1 8.6696 0.2610 -0.2714 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 0.5139 0.8900 25 1 0.2146 2.3195 0.0005 26 1 0.9822 5.2246 1.0243 27 1 1.6049 5.6298 -0.5932 28 1 0.1194 4.6632 -0.4279 29 1 5.1419 2.5923 0.0021 30 1 3.7696 -0.7421 -0.0721 31 1 6.2456 -2.9965 0.3941 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186911.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:02 Heat of formation + Delta-G solvation = -0.437391 kcal Electronic energy + Delta-G solvation = -18293.378907 eV Core-core repulsion = 15158.246352 eV Total energy + Delta-G solvation = -3135.132554 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.54395 -40.00329 -38.55133 -37.36068 -35.46662 -34.55648 -32.16404 -31.73440 -28.73472 -28.07608 -26.87540 -25.24811 -23.17153 -22.32422 -20.26747 -19.57965 -19.03136 -18.69368 -17.64093 -16.98397 -16.80237 -16.54307 -15.77531 -15.70832 -15.20174 -14.63728 -14.54008 -14.05799 -13.93762 -13.71045 -13.21050 -13.01466 -12.91578 -12.41221 -12.31306 -12.25115 -12.15369 -12.00068 -11.95076 -11.80107 -11.68918 -10.91170 -9.75728 -8.85359 -8.73327 -5.60816 -1.49051 0.31480 0.33875 0.41405 1.36642 1.39264 1.47097 2.14061 2.34791 2.41000 2.96099 3.14748 3.71098 3.91513 4.07108 4.29101 4.42255 4.48995 4.49883 4.66828 4.78136 4.79568 4.84629 4.95025 4.98228 5.06932 5.22779 5.34428 5.41731 5.68354 5.84941 6.37453 6.43801 7.22487 7.48668 8.29121 Molecular weight = 252.09amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.007938 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.203691 B = 3526.598163 C = 5027.511889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.082 3.918 4 C -0.146 4.146 5 C -0.112 4.112 6 C -0.097 4.097 7 C 0.026 3.974 8 N -0.006 5.006 9 O -0.253 6.253 10 O -0.154 6.154 11 C -0.207 4.207 12 C 0.144 3.856 13 N -0.512 5.512 14 C -0.373 4.373 15 H 0.102 0.898 16 C 0.003 3.997 17 N -0.863 5.863 18 Si 0.997 3.003 19 H -0.266 1.266 20 H -0.264 1.264 21 H -0.264 1.264 22 H 0.116 0.884 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.179 0.821 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.402 0.598 31 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.636 1.875 0.110 10.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.032 3.968 4 C -0.167 4.167 5 C -0.119 4.119 6 C -0.154 4.154 7 C -0.060 4.060 8 N 0.469 4.531 9 O -0.430 6.430 10 O -0.360 6.360 11 C -0.236 4.236 12 C 0.020 3.980 13 N -0.108 5.108 14 C -0.504 4.504 15 H 0.119 0.881 16 C -0.209 4.209 17 N -0.493 5.493 18 Si 0.818 3.182 19 H -0.191 1.191 20 H -0.189 1.189 21 H -0.188 1.188 22 H 0.134 0.866 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.197 0.803 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.116 0.884 29 H 0.135 0.865 30 H 0.237 0.763 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.367 0.620 0.047 10.386 hybrid contribution 1.139 0.013 0.001 1.139 sum -9.228 0.632 0.048 9.250 Atomic orbital electron populations 1.23416 0.75806 1.05620 1.02827 1.85993 1.24090 1.26090 1.88620 1.18685 0.89581 0.85970 1.02586 1.20772 1.00841 0.88156 1.06977 1.19164 0.88607 0.97889 1.06271 1.20753 0.99386 0.91818 1.03429 1.19875 0.92448 0.77827 1.15872 1.50719 1.00791 1.04636 0.96981 1.96242 1.10906 1.92149 1.43694 1.96118 1.66463 1.34225 1.39151 1.19330 0.99184 0.88595 1.16473 1.16912 0.88048 0.86879 1.06185 1.39515 1.05798 1.05195 1.60336 1.20793 0.83163 0.94585 1.51839 0.88078 1.27733 1.05433 0.93158 0.94537 1.68687 1.41146 0.99693 1.39785 0.84864 0.75025 0.78973 0.79328 1.19144 1.18881 1.18812 0.86579 0.90960 0.91033 0.80342 0.89700 0.93499 0.88382 0.86498 0.76256 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.33 -10.98 9.75 -92.12 -0.90 -11.87 16 3 C 0.08 3.01 6.71 22.69 0.15 3.16 16 4 C -0.15 -4.38 8.66 22.34 0.19 -4.19 16 5 C -0.11 -3.79 5.88 -19.83 -0.12 -3.91 16 6 C -0.10 -2.56 8.58 71.24 0.61 -1.95 16 7 C 0.03 1.09 6.54 36.37 0.24 1.33 16 8 N -0.01 -0.25 4.61 -46.48 -0.21 -0.46 16 9 O -0.25 -11.99 19.67 3.51 0.07 -11.92 16 10 O -0.15 -6.22 17.39 3.52 0.06 -6.16 16 11 C -0.21 -9.49 8.92 22.42 0.20 -9.30 16 12 C 0.14 6.41 6.61 38.50 0.25 6.67 16 13 N -0.51 -25.00 5.27 -180.23 -0.95 -25.95 16 14 C -0.37 -19.09 9.79 86.81 0.85 -18.24 16 15 H 0.10 5.25 5.73 -2.91 -0.02 5.23 16 16 C 0.00 0.14 5.69 87.29 0.50 0.64 16 17 N -0.86 -42.50 13.09 23.25 0.30 -42.19 16 18 Si 1.00 38.43 29.65 68.60 2.03 40.46 16 19 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 20 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 22 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.07 1.14 7.66 -2.39 -0.02 1.13 16 24 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 25 H 0.18 3.60 6.30 -2.91 -0.02 3.58 16 26 H 0.08 2.10 8.10 -2.39 -0.02 2.08 16 27 H 0.05 1.37 6.84 -2.39 -0.02 1.36 16 28 H 0.10 1.85 8.05 -2.39 -0.02 1.83 16 29 H 0.12 5.81 5.93 -2.91 -0.02 5.79 16 30 H 0.40 19.80 7.36 -92.71 -0.68 19.12 16 31 H 0.30 13.29 8.26 -92.71 -0.77 12.53 16 Total: -1.00 -59.60 277.98 4.91 -54.69 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.51 Total: 27.73 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 3.99 Total: -24.33 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -0.86 Total: -68.61 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.77 Total: -29.95 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -59.60 4.91 -54.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186911.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.251 kcal (2) G-P(sol) polarization free energy of solvation -59.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds