Wall clock time and date at job start Sun Mar 29 2020 23:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99661 * 2 1 4 4 H 1.48494 * 109.47187 * 240.00233 * 3 2 1 5 5 H 1.48491 * 109.47389 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.46770 * 120.00561 * 3 2 1 7 7 C 1.37877 * 120.00413 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99717 * 359.97438 * 7 2 1 10 10 C 1.53495 * 114.20591 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98658 * 220.14538 * 10 9 7 12 12 C 1.34780 * 136.06263 * 206.86221 * 11 10 9 13 13 O 1.21583 * 119.99484 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00249 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99924 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47185 * 180.02562 * 15 14 12 17 17 F 1.39898 * 109.47190 * 59.99925 * 16 15 14 18 18 F 1.39899 * 109.47055 * 180.02562 * 16 15 14 19 19 F 1.39905 * 109.46944 * 300.00129 * 16 15 14 20 20 C 1.47067 * 87.88528 * 27.11900 * 11 10 9 21 21 H 0.96998 * 119.99931 * 359.97438 * 1 2 3 22 22 H 1.09006 * 113.28232 * 313.06760 * 9 7 2 23 23 H 1.09005 * 113.46950 * 105.37104 * 10 9 7 24 24 H 1.08994 * 113.52293 * 334.93588 * 10 9 7 25 25 H 0.96995 * 120.00199 * 0.02562 * 14 12 11 26 26 H 1.09005 * 109.47303 * 300.00582 * 15 14 12 27 27 H 1.09000 * 109.47219 * 60.00222 * 15 14 12 28 28 H 1.09007 * 113.46858 * 87.65629 * 20 11 10 29 29 H 1.08993 * 113.47208 * 218.09965 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.1490 -3.7441 -0.0005 11 7 1.2075 -4.3593 -0.9481 12 6 0.8346 -5.6141 -1.2694 13 8 1.3361 -6.5625 -0.6972 14 7 -0.0940 -5.8175 -2.2248 15 6 -0.4987 -7.1813 -2.5743 16 6 -1.5567 -7.1322 -3.6784 17 9 -1.0239 -6.5003 -4.8071 18 9 -1.9437 -8.4347 -4.0118 19 9 -2.6704 -6.4168 -3.2256 20 6 0.8564 -3.0031 -1.3956 21 1 -0.4850 0.8400 0.0004 22 1 0.4439 -2.5306 0.7313 23 1 2.1879 -4.2513 0.9636 24 1 3.1377 -3.5675 -0.4239 25 1 -0.4937 -5.0609 -2.6815 26 1 0.3690 -7.7387 -2.9274 27 1 -0.9135 -7.6739 -1.6948 28 1 1.5006 -2.6280 -2.1910 29 1 -0.2035 -2.8800 -1.6178 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187051061.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:26 Heat of formation + Delta-G solvation = -148.797891 kcal Electronic energy + Delta-G solvation = -18482.958776 eV Core-core repulsion = 14799.536087 eV Total energy + Delta-G solvation = -3683.422689 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.33969 -47.86549 -47.79990 -39.80993 -37.60060 -34.75525 -32.73792 -30.21089 -28.18185 -25.12014 -25.00359 -23.26372 -20.92231 -19.48313 -18.79643 -18.53219 -17.94360 -16.96118 -16.50173 -15.84606 -15.35141 -14.74114 -14.71241 -14.57580 -14.24675 -14.16907 -13.97720 -13.94269 -13.83199 -12.94710 -12.78836 -12.26602 -12.03181 -11.58077 -11.34301 -10.98482 -10.87221 -10.39026 -10.00008 -9.30225 -9.23598 -9.16916 -8.62227 -7.89004 -6.21673 -4.27685 2.31004 2.74937 3.23474 3.29264 3.31306 3.49746 3.50973 3.83619 3.93540 4.27728 4.36804 5.03146 5.08129 5.14405 5.89941 6.12206 6.13943 6.29434 6.37927 6.42050 6.55626 6.69522 7.42660 7.52225 7.76124 8.13840 8.54948 8.76439 8.91208 9.39515 10.87988 Molecular weight = 252.08amu Principal moments of inertia in cm(-1) A = 0.036369 B = 0.004674 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.697973 B = 5988.545382 C = 6448.114054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.064 0.936 9 C 0.037 3.963 10 C 0.122 3.878 11 N -0.661 5.661 12 C 0.734 3.266 13 O -0.605 6.605 14 N -0.749 5.749 15 C 0.103 3.897 16 C 0.448 3.552 17 F -0.178 7.178 18 F -0.176 7.176 19 F -0.177 7.177 20 C 0.097 3.903 21 H 0.265 0.735 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.403 0.597 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 -10.340 -7.129 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.082 0.918 9 C 0.017 3.983 10 C 0.000 4.000 11 N -0.398 5.398 12 C 0.437 3.563 13 O -0.485 6.485 14 N -0.408 5.408 15 C -0.024 4.024 16 C 0.393 3.607 17 F -0.160 7.160 18 F -0.158 7.158 19 F -0.159 7.159 20 C -0.025 4.025 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.238 0.762 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.092 0.908 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.036 -11.121 -6.777 13.373 hybrid contribution -0.071 1.210 -0.649 1.375 sum -3.107 -9.912 -7.427 12.769 Atomic orbital electron populations 1.69938 1.06083 1.27316 1.48876 1.25031 0.94872 0.99430 0.94167 0.86580 0.79580 0.82573 0.78852 1.20058 1.21232 1.20014 1.20862 0.93024 0.89491 1.52311 0.91796 1.20331 0.94796 0.91073 0.92074 1.23271 0.93758 0.92213 0.90755 1.49106 1.44867 1.03107 1.42693 1.15136 0.79339 0.82429 0.79378 1.90872 1.60146 1.40520 1.56980 1.44643 1.46334 1.06655 1.43201 1.22163 0.96690 0.87270 0.96291 1.20631 0.82748 0.73864 0.83457 1.93226 1.85921 1.82349 1.54496 1.93208 1.91949 1.37335 1.93270 1.93238 1.55422 1.78434 1.88769 1.23620 0.99577 0.76914 1.02430 0.92529 0.91264 0.92338 0.90939 0.76161 0.87253 0.87196 0.90830 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.67 13.26 55.43 0.74 -22.94 15 2 C 0.07 1.75 5.46 -17.82 -0.10 1.66 15 3 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 15 4 H -0.28 -5.98 7.11 56.52 0.40 -5.57 15 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.27 -6.01 7.11 56.52 0.40 -5.60 15 7 C -0.52 -12.88 8.83 -34.44 -0.30 -13.18 15 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 15 9 C 0.04 0.83 3.77 -91.26 -0.34 0.49 15 10 C 0.12 2.48 8.18 -8.51 -0.07 2.42 15 11 N -0.66 -13.11 3.69 -191.02 -0.70 -13.82 15 12 C 0.73 14.05 8.79 -86.92 -0.76 13.29 15 13 O -0.60 -13.21 17.12 5.29 0.09 -13.12 15 14 N -0.75 -11.16 5.42 -65.23 -0.35 -11.52 15 15 C 0.10 1.20 5.64 -4.04 -0.02 1.17 15 16 C 0.45 4.82 3.11 37.16 0.12 4.94 15 17 F -0.18 -2.06 17.18 2.25 0.04 -2.02 15 18 F -0.18 -1.82 17.32 2.25 0.04 -1.79 15 19 F -0.18 -2.11 17.18 2.25 0.04 -2.07 15 20 C 0.10 1.97 7.86 -8.51 -0.07 1.90 15 21 H 0.27 6.79 8.31 -40.82 -0.34 6.45 15 22 H 0.07 1.73 8.11 -51.93 -0.42 1.31 15 23 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 24 H 0.07 1.41 8.10 -51.93 -0.42 0.99 15 25 H 0.40 5.62 8.07 -40.82 -0.33 5.30 15 26 H 0.11 1.18 8.14 -51.93 -0.42 0.76 15 27 H 0.11 1.21 8.14 -51.93 -0.42 0.79 15 28 H 0.07 1.47 8.10 -51.93 -0.42 1.05 15 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 LS Contribution 274.74 15.07 4.14 4.14 Total: -1.00 -28.25 274.74 -5.38 -33.62 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -2.83 Total: 2.13 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: -1.55 Total: 12.67 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.32 Total: -48.27 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.12 Total: -5.88 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.25 -5.38 -33.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187051061.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.173 kcal (2) G-P(sol) polarization free energy of solvation -28.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds