Wall clock time and date at job start Sun Mar 29 2020 23:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99661 * 2 1 4 4 H 1.48494 * 109.47187 * 240.00233 * 3 2 1 5 5 H 1.48491 * 109.47389 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.46770 * 120.00561 * 3 2 1 7 7 C 1.37877 * 120.00413 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99979 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99717 * 359.97438 * 7 2 1 10 10 C 1.53495 * 114.20591 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98658 * 220.14538 * 10 9 7 12 12 C 1.34780 * 136.06263 * 206.86221 * 11 10 9 13 13 O 1.21583 * 119.99484 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00249 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99924 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47185 * 180.02562 * 15 14 12 17 17 F 1.39898 * 109.47190 * 59.99925 * 16 15 14 18 18 F 1.39899 * 109.47055 * 180.02562 * 16 15 14 19 19 F 1.39905 * 109.46944 * 300.00129 * 16 15 14 20 20 C 1.47067 * 87.88528 * 27.11900 * 11 10 9 21 21 H 0.96998 * 119.99931 * 359.97438 * 1 2 3 22 22 H 1.09006 * 113.28232 * 313.06760 * 9 7 2 23 23 H 1.09005 * 113.46950 * 105.37104 * 10 9 7 24 24 H 1.08994 * 113.52293 * 334.93588 * 10 9 7 25 25 H 0.96995 * 120.00199 * 0.02562 * 14 12 11 26 26 H 1.09005 * 109.47303 * 300.00582 * 15 14 12 27 27 H 1.09000 * 109.47219 * 60.00222 * 15 14 12 28 28 H 1.09007 * 113.46858 * 87.65629 * 20 11 10 29 29 H 1.08993 * 113.47208 * 218.09965 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.1490 -3.7441 -0.0005 11 7 1.2075 -4.3593 -0.9481 12 6 0.8346 -5.6141 -1.2694 13 8 1.3361 -6.5625 -0.6972 14 7 -0.0940 -5.8175 -2.2248 15 6 -0.4987 -7.1813 -2.5743 16 6 -1.5567 -7.1322 -3.6784 17 9 -1.0239 -6.5003 -4.8071 18 9 -1.9437 -8.4347 -4.0118 19 9 -2.6704 -6.4168 -3.2256 20 6 0.8564 -3.0031 -1.3956 21 1 -0.4850 0.8400 0.0004 22 1 0.4439 -2.5306 0.7313 23 1 2.1879 -4.2513 0.9636 24 1 3.1377 -3.5675 -0.4239 25 1 -0.4937 -5.0609 -2.6815 26 1 0.3690 -7.7387 -2.9274 27 1 -0.9135 -7.6739 -1.6948 28 1 1.5006 -2.6280 -2.1910 29 1 -0.2035 -2.8800 -1.6178 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187051061.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:26 Heat of formation + Delta-G solvation = -166.820487 kcal Electronic energy + Delta-G solvation = -18483.740294 eV Core-core repulsion = 14799.536087 eV Total energy + Delta-G solvation = -3684.204207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 252.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.23727 -48.74265 -48.71769 -41.35879 -39.17916 -36.07854 -34.63376 -31.62774 -29.60064 -26.88385 -26.62979 -24.29453 -22.48914 -20.93429 -19.69922 -19.50302 -19.31080 -18.62489 -17.96590 -17.21017 -16.81208 -16.39161 -15.80344 -15.68605 -15.41067 -15.22341 -15.13845 -14.86024 -14.84776 -14.39438 -14.24522 -14.03666 -13.23565 -13.13434 -13.00647 -12.72686 -12.61052 -12.16361 -11.68261 -11.04054 -10.99881 -10.55578 -10.51097 -9.47603 -8.14777 -6.25617 1.18159 1.50866 1.51972 1.58926 1.64904 2.01538 2.46666 2.58829 2.71268 2.92459 3.15568 3.22202 4.11385 4.17225 4.26231 4.42807 4.51063 4.73692 4.74884 4.92896 5.01975 5.06568 5.62521 5.84025 6.04598 6.25542 6.83418 7.00448 7.39375 7.45651 8.94871 Molecular weight = 252.08amu Principal moments of inertia in cm(-1) A = 0.036369 B = 0.004674 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.697973 B = 5988.545382 C = 6448.114054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.022 3.978 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.023 3.977 10 C 0.129 3.871 11 N -0.664 5.664 12 C 0.733 3.267 13 O -0.632 6.632 14 N -0.739 5.739 15 C 0.100 3.900 16 C 0.460 3.540 17 F -0.181 7.181 18 F -0.170 7.170 19 F -0.183 7.183 20 C 0.113 3.887 21 H 0.264 0.736 22 H 0.040 0.960 23 H 0.059 0.941 24 H 0.085 0.915 25 H 0.409 0.591 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.719 -10.614 -7.960 13.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.179 4.179 3 Si 0.783 3.217 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.004 3.996 10 C 0.007 3.993 11 N -0.401 5.401 12 C 0.436 3.564 13 O -0.514 6.514 14 N -0.397 5.397 15 C -0.026 4.026 16 C 0.405 3.595 17 F -0.163 7.163 18 F -0.151 7.151 19 F -0.164 7.164 20 C -0.010 4.010 21 H 0.073 0.927 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.103 0.897 25 H 0.245 0.755 26 H 0.141 0.859 27 H 0.137 0.863 28 H 0.099 0.901 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.612 -11.413 -7.635 13.978 hybrid contribution -0.229 1.218 -0.385 1.298 sum -2.841 -10.195 -8.021 13.279 Atomic orbital electron populations 1.70048 1.07401 1.27876 1.50320 1.25747 0.95540 1.02504 0.94086 0.85620 0.78307 0.78757 0.79028 1.19241 1.21493 1.19696 1.21191 0.93427 0.90415 1.51537 0.91347 1.20213 0.94713 0.91680 0.93021 1.23138 0.93932 0.91007 0.91260 1.49012 1.44961 1.03349 1.42745 1.15205 0.79757 0.81606 0.79800 1.90853 1.61328 1.41067 1.58185 1.44536 1.44966 1.08369 1.41840 1.22367 0.97565 0.85555 0.97085 1.20367 0.82209 0.73903 0.82982 1.93226 1.85946 1.82456 1.54640 1.93225 1.91840 1.36916 1.93169 1.93234 1.55733 1.78635 1.88836 1.23346 0.99722 0.76954 1.00944 0.92700 0.94195 0.92261 0.89707 0.75490 0.85922 0.86258 0.90131 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.35 13.26 21.45 0.28 -49.07 15 2 C 0.02 1.09 5.46 84.65 0.46 1.55 15 3 Si 0.96 40.00 29.54 68.60 2.03 42.02 15 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 15 5 H -0.29 -12.10 7.11 99.48 0.71 -11.40 15 6 H -0.27 -11.13 7.11 99.48 0.71 -10.43 15 7 C -0.53 -25.96 8.83 25.60 0.23 -25.73 15 8 H 0.07 3.23 7.81 -2.91 -0.02 3.21 15 9 C 0.02 1.06 3.77 -11.21 -0.04 1.01 15 10 C 0.13 5.15 8.18 83.18 0.68 5.83 15 11 N -0.66 -25.65 3.69 -876.54 -3.23 -28.89 15 12 C 0.73 27.07 8.79 179.05 1.57 28.64 15 13 O -0.63 -26.77 17.12 -3.98 -0.07 -26.84 15 14 N -0.74 -20.75 5.42 -478.54 -2.59 -23.34 15 15 C 0.10 2.12 5.64 86.38 0.49 2.61 15 16 C 0.46 8.97 3.11 71.98 0.22 9.20 15 17 F -0.18 -3.82 17.18 44.97 0.77 -3.05 15 18 F -0.17 -3.16 17.32 44.97 0.78 -2.38 15 19 F -0.18 -4.03 17.18 44.97 0.77 -3.26 15 20 C 0.11 4.49 7.86 83.18 0.65 5.14 15 21 H 0.26 13.60 8.31 -92.71 -0.77 12.83 15 22 H 0.04 2.04 8.11 -2.38 -0.02 2.02 15 23 H 0.06 2.33 8.14 -2.38 -0.02 2.31 15 24 H 0.08 3.17 8.10 -2.39 -0.02 3.15 15 25 H 0.41 10.70 8.07 -92.71 -0.75 9.95 15 26 H 0.12 2.36 8.14 -2.38 -0.02 2.34 15 27 H 0.12 2.39 8.14 -2.39 -0.02 2.37 15 28 H 0.08 3.10 8.10 -2.38 -0.02 3.08 15 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 Total: -1.00 -58.33 274.74 3.45 -54.89 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.44 Total: 11.65 kcal Atomic # 6 Polarization: 23.99 SS G_CDS: 4.27 Total: 28.26 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -5.54 Total: -101.29 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.07 Total: -26.84 kcal Atomic # 9 Polarization: -11.01 SS G_CDS: 2.32 Total: -8.68 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.02 kcal Total: -58.33 3.45 -54.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187051061.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.935 kcal (2) G-P(sol) polarization free energy of solvation -58.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds