Wall clock time and date at job start Sun Mar 29 2020 22:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 116.99849 * 2 1 4 4 C 1.38807 * 120.01885 * 359.72486 * 3 2 1 5 5 C 1.38174 * 120.08713 * 179.74545 * 4 3 2 6 6 C 1.38155 * 120.12814 * 0.55369 * 5 4 3 7 7 C 1.38914 * 120.03665 * 359.69823 * 6 5 4 8 8 N 1.39845 * 120.04252 * 180.02562 * 7 6 5 9 9 C 1.34780 * 119.99941 * 221.89399 * 8 7 6 10 10 S 1.71197 * 120.00030 * 5.53815 * 9 8 7 11 11 N 1.34777 * 119.99762 * 185.54346 * 9 8 7 12 12 C 1.37048 * 119.99448 * 180.02562 * 11 9 8 13 13 H 1.08000 * 120.00292 * 359.97438 * 12 11 9 14 14 C 1.38885 * 119.99967 * 179.97438 * 12 11 9 15 15 N 1.31479 * 119.99778 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00242 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47029 * 59.99866 * 16 14 12 18 18 H 1.48502 * 109.47005 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47161 * 300.00061 * 16 14 12 20 20 C 1.38574 * 120.01725 * 180.02562 * 3 2 1 21 21 H 1.09005 * 109.47356 * 299.99978 * 1 2 3 22 22 H 1.08998 * 109.47371 * 59.99971 * 1 2 3 23 23 H 1.09004 * 109.46744 * 180.02562 * 1 2 3 24 24 H 1.08007 * 119.95945 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.93747 * 180.24815 * 5 4 3 26 26 H 1.08002 * 119.98052 * 179.72188 * 6 5 4 27 27 H 0.96999 * 120.00181 * 41.89614 * 8 7 6 28 28 H 0.96995 * 120.00731 * 359.97438 * 11 9 8 29 29 H 0.96998 * 119.99839 * 179.97438 * 15 14 12 30 30 H 1.07995 * 120.06722 * 359.95246 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2903 2.3753 -0.0058 5 6 1.9161 3.6072 -0.0005 6 6 3.2955 3.6843 -0.0010 7 6 4.0569 2.5224 -0.0004 8 7 5.4531 2.6003 -0.0004 9 6 6.1744 1.7700 -0.7795 10 16 5.3818 0.7183 -1.8733 11 7 7.5197 1.7677 -0.6972 12 6 8.2531 0.9238 -1.4898 13 1 7.7531 0.2604 -2.1799 14 6 9.6394 0.9217 -1.4056 15 7 10.2481 1.7297 -0.5658 16 14 10.6390 -0.2290 -2.4853 17 1 10.3669 0.0715 -3.9139 18 1 12.0851 -0.0379 -2.2065 19 1 10.2598 -1.6350 -2.1943 20 6 3.4298 1.2839 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 0.2118 2.3183 -0.0107 25 1 1.3258 4.5116 -0.0009 26 1 3.7821 4.6485 -0.0013 27 1 5.9025 3.2519 0.5603 28 1 7.9688 2.3638 -0.0777 29 1 11.2163 1.7280 -0.5067 30 1 4.0193 0.3791 -0.0002 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196061538.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:55 Heat of formation + Delta-G solvation = 4.647603 kcal Electronic energy + Delta-G solvation = -15636.289506 eV Core-core repulsion = 12944.130324 eV Total energy + Delta-G solvation = -2692.159181 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.82461 -38.31548 -36.79245 -34.56044 -32.20131 -30.21038 -28.78692 -26.96967 -25.54020 -23.17486 -21.71062 -21.40502 -19.02407 -18.12282 -17.18147 -15.79204 -15.59207 -15.49377 -15.37912 -15.00183 -14.21145 -13.89407 -13.79327 -13.04739 -12.82391 -12.29146 -12.05465 -11.92033 -11.48171 -11.30182 -10.94620 -10.88398 -10.63919 -10.55957 -10.02237 -9.89015 -9.02596 -8.05565 -7.72417 -7.12152 -6.60542 -5.81526 -4.37740 1.66580 1.95329 2.58137 3.01623 3.04994 3.15674 3.30601 3.62080 3.78189 4.07506 4.29023 4.71348 4.94718 5.12198 5.28806 5.32101 5.40535 5.58300 5.60637 5.82593 6.03587 6.34866 6.70116 6.74752 6.90252 6.93043 7.01113 7.20706 7.53618 7.87550 7.98903 8.23028 8.72346 8.87883 10.00733 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.038767 B = 0.005273 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.095237 B = 5308.760845 C = 5829.567804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.314 6.314 3 C 0.127 3.873 4 C -0.226 4.226 5 C -0.081 4.081 6 C -0.182 4.182 7 C 0.211 3.789 8 N -0.662 5.662 9 C 0.427 3.573 10 S -0.736 6.736 11 N -0.455 5.455 12 C -0.282 4.282 13 H 0.148 0.852 14 C 0.035 3.965 15 N -0.865 5.865 16 Si 0.954 3.046 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.261 1.261 20 C -0.106 4.106 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.093 0.907 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.394 0.606 28 H 0.394 0.606 29 H 0.287 0.713 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.195 3.350 4.748 11.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.228 6.228 3 C 0.080 3.920 4 C -0.246 4.246 5 C -0.101 4.101 6 C -0.203 4.203 7 C 0.115 3.885 8 N -0.293 5.293 9 C 0.067 3.933 10 S -0.606 6.606 11 N -0.055 5.055 12 C -0.417 4.417 13 H 0.165 0.835 14 C -0.175 4.175 15 N -0.498 5.498 16 Si 0.777 3.223 17 H -0.186 1.186 18 H -0.204 1.204 19 H -0.186 1.186 20 C -0.130 4.130 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.112 0.888 24 H 0.137 0.863 25 H 0.137 0.863 26 H 0.135 0.865 27 H 0.230 0.770 28 H 0.230 0.770 29 H 0.098 0.902 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.181 2.386 3.967 11.184 hybrid contribution 1.230 1.050 0.660 1.747 sum -8.952 3.436 4.626 10.646 Atomic orbital electron populations 1.22949 0.79429 1.03245 1.00838 1.86102 1.20402 1.27216 1.89042 1.18676 0.91776 0.83754 0.97745 1.21029 0.99265 0.92493 1.11784 1.20440 0.93553 0.96609 0.99469 1.20718 0.93885 0.96719 1.09013 1.16890 0.81264 0.92836 0.97551 1.41499 1.04087 1.38192 1.45476 1.20975 0.84007 0.94502 0.93773 1.92478 1.70647 1.50444 1.47025 1.41110 1.02327 1.30858 1.31165 1.20887 0.88144 1.15327 1.17361 0.83487 1.25831 0.97209 0.97489 0.97000 1.69658 1.12130 1.34848 1.33200 0.85511 0.77035 0.79871 0.79852 1.18637 1.20438 1.18594 1.20681 0.91309 0.99235 1.01743 0.93188 0.93009 0.88828 0.86314 0.86299 0.86473 0.77026 0.77009 0.90235 0.82887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.31 -5.33 10.49 -19.44 -0.20 -5.53 16 3 C 0.13 2.28 6.68 -39.25 -0.26 2.01 16 4 C -0.23 -3.37 9.04 -39.39 -0.36 -3.72 16 5 C -0.08 -1.16 10.03 -39.64 -0.40 -1.55 16 6 C -0.18 -2.88 9.97 -39.36 -0.39 -3.27 16 7 C 0.21 4.00 5.91 -83.74 -0.49 3.51 16 8 N -0.66 -12.73 5.32 -11.42 -0.06 -12.80 16 9 C 0.43 10.04 7.71 -86.91 -0.67 9.37 16 10 S -0.74 -19.95 24.44 -107.50 -2.63 -22.58 16 11 N -0.45 -10.71 5.29 -12.53 -0.07 -10.78 16 12 C -0.28 -7.15 9.51 -14.98 -0.14 -7.29 16 13 H 0.15 4.01 6.22 -52.49 -0.33 3.68 16 14 C 0.03 0.82 5.50 -17.46 -0.10 0.73 16 15 N -0.87 -20.65 13.05 55.49 0.72 -19.92 16 16 Si 0.95 19.00 29.55 -169.99 -5.02 13.97 16 17 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 18 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 20 C -0.11 -2.16 7.79 -39.24 -0.31 -2.46 16 21 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 22 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 23 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.12 1.42 6.29 -52.48 -0.33 1.09 16 25 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 26 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.39 6.20 8.84 -40.82 -0.36 5.83 16 28 H 0.39 8.63 7.92 -40.82 -0.32 8.31 16 29 H 0.29 6.41 8.31 -40.82 -0.34 6.07 16 30 H 0.15 3.58 6.27 -49.88 -0.31 3.26 16 LS Contribution 274.84 15.07 4.14 4.14 Total: -1.00 -30.43 274.84 -8.09 -38.52 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -2.85 Total: 16.32 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.13 Total: -1.34 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.60 Total: -43.50 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.20 Total: -5.53 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.97 kcal Atomic # 16 Polarization: -19.95 SS G_CDS: -2.63 Total: -22.58 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.43 -8.09 -38.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196061538.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.169 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds