Wall clock time and date at job start Sun Mar 29 2020 22:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 116.99849 * 2 1 4 4 C 1.38807 * 120.01885 * 359.72486 * 3 2 1 5 5 C 1.38174 * 120.08713 * 179.74545 * 4 3 2 6 6 C 1.38155 * 120.12814 * 0.55369 * 5 4 3 7 7 C 1.38914 * 120.03665 * 359.69823 * 6 5 4 8 8 N 1.39845 * 120.04252 * 180.02562 * 7 6 5 9 9 C 1.34780 * 119.99941 * 221.89399 * 8 7 6 10 10 S 1.71197 * 120.00030 * 5.53815 * 9 8 7 11 11 N 1.34777 * 119.99762 * 185.54346 * 9 8 7 12 12 C 1.37048 * 119.99448 * 180.02562 * 11 9 8 13 13 H 1.08000 * 120.00292 * 359.97438 * 12 11 9 14 14 C 1.38885 * 119.99967 * 179.97438 * 12 11 9 15 15 N 1.31479 * 119.99778 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00242 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47029 * 59.99866 * 16 14 12 18 18 H 1.48502 * 109.47005 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47161 * 300.00061 * 16 14 12 20 20 C 1.38574 * 120.01725 * 180.02562 * 3 2 1 21 21 H 1.09005 * 109.47356 * 299.99978 * 1 2 3 22 22 H 1.08998 * 109.47371 * 59.99971 * 1 2 3 23 23 H 1.09004 * 109.46744 * 180.02562 * 1 2 3 24 24 H 1.08007 * 119.95945 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.93747 * 180.24815 * 5 4 3 26 26 H 1.08002 * 119.98052 * 179.72188 * 6 5 4 27 27 H 0.96999 * 120.00181 * 41.89614 * 8 7 6 28 28 H 0.96995 * 120.00731 * 359.97438 * 11 9 8 29 29 H 0.96998 * 119.99839 * 179.97438 * 15 14 12 30 30 H 1.07995 * 120.06722 * 359.95246 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2903 2.3753 -0.0058 5 6 1.9161 3.6072 -0.0005 6 6 3.2955 3.6843 -0.0010 7 6 4.0569 2.5224 -0.0004 8 7 5.4531 2.6003 -0.0004 9 6 6.1744 1.7700 -0.7795 10 16 5.3818 0.7183 -1.8733 11 7 7.5197 1.7677 -0.6972 12 6 8.2531 0.9238 -1.4898 13 1 7.7531 0.2604 -2.1799 14 6 9.6394 0.9217 -1.4056 15 7 10.2481 1.7297 -0.5658 16 14 10.6390 -0.2290 -2.4853 17 1 10.3669 0.0715 -3.9139 18 1 12.0851 -0.0379 -2.2065 19 1 10.2598 -1.6350 -2.1943 20 6 3.4298 1.2839 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 0.2118 2.3183 -0.0107 25 1 1.3258 4.5116 -0.0009 26 1 3.7821 4.6485 -0.0013 27 1 5.9025 3.2519 0.5603 28 1 7.9688 2.3638 -0.0777 29 1 11.2163 1.7280 -0.5067 30 1 4.0193 0.3791 -0.0002 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196061538.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:55 Heat of formation + Delta-G solvation = -15.002112 kcal Electronic energy + Delta-G solvation = -15637.141582 eV Core-core repulsion = 12944.130324 eV Total energy + Delta-G solvation = -2693.011257 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 252.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.15692 -39.86337 -38.31070 -36.13318 -33.97957 -31.48199 -30.19512 -27.99529 -27.31988 -24.85939 -23.09523 -22.87565 -20.73227 -19.67870 -18.74499 -17.29518 -17.02693 -16.82130 -16.59813 -16.47964 -15.96335 -15.58329 -15.26809 -14.35581 -14.26299 -13.76699 -13.54571 -13.06373 -12.95468 -12.86836 -12.59581 -12.14693 -12.10888 -11.93975 -11.77600 -11.52835 -10.69469 -9.57853 -9.05388 -8.94534 -8.61030 -7.84778 -6.31356 0.20741 0.66624 0.90468 1.36571 1.46000 1.53915 1.56160 2.04327 2.27873 2.62916 2.82250 2.99020 3.19880 4.05581 4.25234 4.39076 4.40567 4.48473 4.61397 4.72771 4.77500 4.93125 5.14130 5.27222 5.45941 5.51164 5.60435 5.66176 6.02138 6.36032 6.43770 6.66038 6.84562 7.05018 8.18769 Molecular weight = 252.07amu Principal moments of inertia in cm(-1) A = 0.038767 B = 0.005273 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.095237 B = 5308.760845 C = 5829.567804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.346 6.346 3 C 0.116 3.884 4 C -0.216 4.216 5 C -0.069 4.069 6 C -0.177 4.177 7 C 0.183 3.817 8 N -0.645 5.645 9 C 0.444 3.556 10 S -0.807 6.807 11 N -0.452 5.452 12 C -0.317 4.317 13 H 0.122 0.878 14 C 0.011 3.989 15 N -0.878 5.878 16 Si 1.011 2.989 17 H -0.265 1.265 18 H -0.260 1.260 19 H -0.266 1.266 20 C -0.140 4.140 21 H 0.072 0.928 22 H 0.062 0.938 23 H 0.112 0.888 24 H 0.156 0.844 25 H 0.165 0.835 26 H 0.144 0.856 27 H 0.413 0.587 28 H 0.402 0.598 29 H 0.296 0.704 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.396 5.194 5.313 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.260 6.260 3 C 0.069 3.931 4 C -0.235 4.235 5 C -0.088 4.088 6 C -0.199 4.199 7 C 0.087 3.913 8 N -0.277 5.277 9 C 0.081 3.919 10 S -0.680 6.680 11 N -0.053 5.053 12 C -0.451 4.451 13 H 0.140 0.860 14 C -0.197 4.197 15 N -0.511 5.511 16 Si 0.831 3.169 17 H -0.190 1.190 18 H -0.184 1.184 19 H -0.190 1.190 20 C -0.164 4.164 21 H 0.090 0.910 22 H 0.081 0.919 23 H 0.130 0.870 24 H 0.173 0.827 25 H 0.183 0.817 26 H 0.162 0.838 27 H 0.252 0.748 28 H 0.240 0.760 29 H 0.107 0.893 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.414 4.278 4.590 13.025 hybrid contribution 1.417 0.525 0.578 1.618 sum -9.997 4.803 5.168 12.236 Atomic orbital electron populations 1.23315 0.76503 1.05203 1.02360 1.86064 1.23533 1.27429 1.89012 1.18834 0.91231 0.85253 0.97736 1.21450 1.00972 0.91487 1.09578 1.21008 0.93097 0.98031 0.96665 1.21055 0.94702 0.96440 1.07677 1.17216 0.80878 0.93683 0.99514 1.41335 1.04529 1.37365 1.44509 1.20598 0.83961 0.94014 0.93298 1.92551 1.72009 1.53454 1.49961 1.41003 1.02161 1.30913 1.31251 1.20747 0.89094 1.16681 1.18626 0.85993 1.26529 0.97125 0.98381 0.97703 1.69666 1.12909 1.35118 1.33399 0.84706 0.76506 0.77706 0.77975 1.18957 1.18366 1.19042 1.20474 0.92695 0.98294 1.04899 0.90976 0.91897 0.86964 0.82690 0.81729 0.83834 0.74815 0.76032 0.89324 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.35 -11.77 10.49 -92.48 -0.97 -12.74 16 3 C 0.12 4.11 6.68 22.49 0.15 4.26 16 4 C -0.22 -5.73 9.04 22.39 0.20 -5.52 16 5 C -0.07 -1.67 10.03 22.23 0.22 -1.45 16 6 C -0.18 -5.14 9.97 22.41 0.22 -4.92 16 7 C 0.18 6.89 5.91 38.16 0.23 7.12 16 8 N -0.65 -25.00 5.32 -190.04 -1.01 -26.01 16 9 C 0.44 21.53 7.71 179.05 1.38 22.91 16 10 S -0.81 -46.03 24.44 -56.49 -1.38 -47.41 16 11 N -0.45 -21.85 5.29 -193.56 -1.02 -22.87 16 12 C -0.32 -16.54 9.51 84.03 0.80 -15.75 16 13 H 0.12 6.98 6.22 -2.91 -0.02 6.96 16 14 C 0.01 0.53 5.50 84.90 0.47 1.00 16 15 N -0.88 -41.37 13.05 21.66 0.28 -41.09 16 16 Si 1.01 38.78 29.55 68.60 2.03 40.81 16 17 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 18 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 19 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 20 C -0.14 -5.91 7.79 22.49 0.18 -5.73 16 21 H 0.07 1.14 7.67 -2.38 -0.02 1.13 16 22 H 0.06 1.14 7.65 -2.39 -0.02 1.12 16 23 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.16 2.94 6.29 -2.91 -0.02 2.93 16 25 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 26 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 27 H 0.41 12.70 8.84 -92.71 -0.82 11.88 16 28 H 0.40 17.80 7.92 -92.71 -0.73 17.07 16 29 H 0.30 12.84 8.31 -92.71 -0.77 12.07 16 30 H 0.11 5.50 6.27 -4.57 -0.03 5.48 16 Total: -1.00 -69.63 274.84 2.51 -67.13 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: -0.37 Total: 38.74 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 4.96 Total: 3.44 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -1.75 Total: -89.97 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.97 Total: -12.74 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 16 Polarization: -46.03 SS G_CDS: -1.38 Total: -47.41 kcal Total: -69.63 2.51 -67.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196061538.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.124 kcal (2) G-P(sol) polarization free energy of solvation -69.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds